RNA–Protein interactions for RNA: ENST00000628566.2

NR1I3-235, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 5 BASIC

Gene NR1I3, Length 1,201 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-235ENST00000628566 NISCHQ9Y2I1 1504 aa18.66■□□□□ 0.58
NR1I3-235ENST00000628566 CCDC180Q9P1Z9 1646 aa16.62■□□□□ 0.25
NR1I3-235ENST00000628566 ABCC9O60706 1549 aa16.15■□□□□ 0.18
NR1I3-235ENST00000628566 DCAF8L2P0C7V8 631 aa15.64■□□□□ 0.09
NR1I3-235ENST00000628566 RB1CC1Q8TDY2 1594 aa15.63■□□□□ 0.09
NR1I3-235ENST00000628566 NACADO15069 1562 aa15.62■□□□□ 0.09
NR1I3-235ENST00000628566 ZCCHC6Q5VYS8 1495 aaKnown RBP15.55■□□□□ 0.08
NR1I3-235ENST00000628566 MYO15BQ96JP2 1530 aa15.53■□□□□ 0.08
NR1I3-235ENST00000628566 DCAF1Q9Y4B6 1507 aa15.48■□□□□ 0.07
NR1I3-235ENST00000628566 UNC13AQ9UPW8 1703 aa15.17■□□□□ 0.02
NR1I3-235ENST00000628566 SCRIBQ14160 1630 aa15.13■□□□□ 0.01
NR1I3-235ENST00000628566 PABPN1Q86U42 306 aaKnown RBP eCLIP15.09■□□□□ 0.01
NR1I3-235ENST00000628566 BICRAQ9NZM4 1560 aa15.04■□□□□ -0
NR1I3-235ENST00000628566 SHROOM4Q9ULL8 1493 aa15.03■□□□□ -0
NR1I3-235ENST00000628566 AEBP2Q6ZN18 517 aaPredicted RBP14.9□□□□□ -0.02
NR1I3-235ENST00000628566 EIF4G1Q04637 1599 aaKnown RBP14.7□□□□□ -0.06
NR1I3-235ENST00000628566 DNAJC5BQ9UF47 199 aa14.68□□□□□ -0.06
NR1I3-235ENST00000628566 CC2D2AQ9P2K1 1620 aa14.62□□□□□ -0.07
NR1I3-235ENST00000628566 CECR2Q9BXF3 1484 aa14.54□□□□□ -0.08
NR1I3-235ENST00000628566 BAZ1AQ9NRL2 1556 aaPredicted RBP14.51□□□□□ -0.09
NR1I3-235ENST00000628566 SMARCA4P51532 1647 aa14.48□□□□□ -0.09
NR1I3-235ENST00000628566 SMARCA2P51531 1590 aa14.43□□□□□ -0.1
NR1I3-235ENST00000628566 NCAPD3P42695 1498 aa14.38□□□□□ -0.11
NR1I3-235ENST00000628566 ATAD2BQ9ULI0 1458 aa14.38□□□□□ -0.11
NR1I3-235ENST00000628566 MROH2BQ7Z745 1585 aa14.34□□□□□ -0.11
NR1I3-235ENST00000628566 HMGXB3Q12766 1538 aa14.33□□□□□ -0.12
NR1I3-235ENST00000628566 PEG3Q9GZU2 1588 aa14.33□□□□□ -0.12
NR1I3-235ENST00000628566 BAZ1BQ9UIG0 1483 aaKnown RBP14.31□□□□□ -0.12
NR1I3-235ENST00000628566 RSF1Q96T23 1441 aaPredicted RBP14.22□□□□□ -0.13
NR1I3-235ENST00000628566 WIZO95785 1651 aa14.2□□□□□ -0.14
NR1I3-235ENST00000628566 CHIC1Q5VXU3 224 aa14.2□□□□□ -0.14
NR1I3-235ENST00000628566 TOP2AP11388 1531 aaKnown RBP14.1□□□□□ -0.15
NR1I3-235ENST00000628566 LAMC3Q9Y6N6 1575 aa14.03□□□□□ -0.16
NR1I3-235ENST00000628566 ERCC6Q03468 1493 aa14□□□□□ -0.17
NR1I3-235ENST00000628566 CADPSQ9ULU8 1353 aa13.97□□□□□ -0.17
NR1I3-235ENST00000628566 PDS5BQ9NTI5 1447 aa13.96□□□□□ -0.18
NR1I3-235ENST00000628566 NESP48681 1621 aa13.95□□□□□ -0.18
NR1I3-235ENST00000628566 SUPT5HO00267 1087 aaKnown RBP13.94□□□□□ -0.18
NR1I3-235ENST00000628566 CCDC88BA6NC98 1476 aa13.91□□□□□ -0.18
NR1I3-235ENST00000628566 CFTRP13569 1480 aa13.88□□□□□ -0.19
NR1I3-235ENST00000628566 CUX2O14529 1486 aa13.82□□□□□ -0.2
NR1I3-235ENST00000628566 CEP164Q9UPV0 1460 aa13.82□□□□□ -0.2
NR1I3-235ENST00000628566 KIF21AQ7Z4S6 1674 aa13.82□□□□□ -0.2
NR1I3-235ENST00000628566 PRDM2Q13029 1718 aa13.81□□□□□ -0.2
NR1I3-235ENST00000628566 FANCD2Q9BXW9 1451 aa13.8□□□□□ -0.2
NR1I3-235ENST00000628566 MRC2Q9UBG0 1479 aa13.77□□□□□ -0.21
NR1I3-235ENST00000628566 THOC2Q8NI27 1593 aaKnown RBP13.75□□□□□ -0.21
NR1I3-235ENST00000628566 WDR62O43379 1518 aa13.7□□□□□ -0.22
NR1I3-235ENST00000628566 ABCC8Q09428 1581 aa13.67□□□□□ -0.22
NR1I3-235ENST00000628566 URB2Q14146 1524 aaKnown RBP13.62□□□□□ -0.23
NR1I3-235ENST00000628566 DNMBPQ6XZF7 1577 aa13.59□□□□□ -0.23
NR1I3-235ENST00000628566 TOPBP1Q92547 1522 aa13.58□□□□□ -0.24
NR1I3-235ENST00000628566 IFT140Q96RY7 1462 aa13.53□□□□□ -0.24
NR1I3-235ENST00000628566 CUX1P39880 1505 aa13.46□□□□□ -0.25
NR1I3-235ENST00000628566 POLA1P09884 1462 aaPredicted RBP13.46□□□□□ -0.25
NR1I3-235ENST00000628566 WRNQ14191 1432 aaPredicted RBP eCLIP13.46□□□□□ -0.26
NR1I3-235ENST00000628566 FGD5Q6ZNL6 1462 aa13.44□□□□□ -0.26
NR1I3-235ENST00000628566 SOGA1O94964 1423 aa13.44□□□□□ -0.26
NR1I3-235ENST00000628566 TOP2BQ02880 1626 aa13.41□□□□□ -0.26
NR1I3-235ENST00000628566 WDR97A6NE52 1622 aa13.4□□□□□ -0.26
NR1I3-235ENST00000628566 TARBP1Q13395 1621 aaKnown RBP13.4□□□□□ -0.26
NR1I3-235ENST00000628566 BIVM-ERCC5R4GMW8 1640 aa13.39□□□□□ -0.27
NR1I3-235ENST00000628566 RAD54L2Q9Y4B4 1467 aa13.37□□□□□ -0.27
NR1I3-235ENST00000628566 ZNF608Q9ULD9 1512 aaPredicted RBP13.37□□□□□ -0.27
NR1I3-235ENST00000628566 EIF4G3O43432 1585 aaKnown RBP13.37□□□□□ -0.27
NR1I3-235ENST00000628566 SYNJ1O43426 1573 aa13.36□□□□□ -0.27
NR1I3-235ENST00000628566 ABCA10Q8WWZ4 1543 aa13.34□□□□□ -0.27
NR1I3-235ENST00000628566 AQRO60306 1485 aaKnown RBP eCLIP13.33□□□□□ -0.28
NR1I3-235ENST00000628566 TDRD9Q8NDG6 1382 aaKnown RBP13.32□□□□□ -0.28
NR1I3-235ENST00000628566 GRIN2BQ13224 1484 aa13.29□□□□□ -0.28
NR1I3-235ENST00000628566 DNAJC5Q9H3Z4 198 aa13.29□□□□□ -0.28
NR1I3-235ENST00000628566 GAPVD1Q14C86 1478 aa13.29□□□□□ -0.28
NR1I3-235ENST00000628566 OSCARQ8IYS5 282 aa13.27□□□□□ -0.29
NR1I3-235ENST00000628566 MAGI1Q96QZ7 1491 aaPredicted RBP13.26□□□□□ -0.29
NR1I3-235ENST00000628566 ABCA5Q8WWZ7 1642 aa13.25□□□□□ -0.29
NR1I3-235ENST00000628566 FBLN2P98095 1184 aa13.24□□□□□ -0.29
NR1I3-235ENST00000628566 PBRM1Q86U86 1689 aa13.24□□□□□ -0.29
NR1I3-235ENST00000628566 SNAPC4Q5SXM2 1469 aa13.23□□□□□ -0.29
NR1I3-235ENST00000628566 CHMP7Q8WUX9 453 aaPredicted RBP13.23□□□□□ -0.29
NR1I3-235ENST00000628566 TRIM41Q8WV44 630 aa13.21□□□□□ -0.29
NR1I3-235ENST00000628566 KIF27Q86VH2 1401 aa13.21□□□□□ -0.3
NR1I3-235ENST00000628566 ERICH3Q5RHP9 1530 aa13.19□□□□□ -0.3
NR1I3-235ENST00000628566 SYNJ2O15056 1496 aa13.19□□□□□ -0.3
NR1I3-235ENST00000628566 CHD1O14646 1710 aa13.18□□□□□ -0.3
NR1I3-235ENST00000628566 FHAD1B1AJZ9 1412 aa13.15□□□□□ -0.3
NR1I3-235ENST00000628566 ADAMTS12P58397 1594 aa13.13□□□□□ -0.31
NR1I3-235ENST00000628566 CUL7Q14999 1698 aa13.11□□□□□ -0.31
NR1I3-235ENST00000628566 GRIN2AQ12879 1464 aa13.1□□□□□ -0.31
NR1I3-235ENST00000628566 IGF1RP08069 1367 aa13.07□□□□□ -0.32
NR1I3-235ENST00000628566 CARMIL1Q5VZK9 1371 aa13.04□□□□□ -0.32
NR1I3-235ENST00000628566 EEA1Q15075 1411 aa13.03□□□□□ -0.32
NR1I3-235ENST00000628566 CLASP1Q7Z460 1538 aa13.03□□□□□ -0.32
NR1I3-235ENST00000628566 NUP160Q12769 1436 aa13.02□□□□□ -0.33
NR1I3-235ENST00000628566 CEP170Q5SW79 1584 aa12.99□□□□□ -0.33
NR1I3-235ENST00000628566 ARHGEF11O15085 1522 aa12.99□□□□□ -0.33
NR1I3-235ENST00000628566 RIMBP3CA6NJZ7 1639 aa12.99□□□□□ -0.33
NR1I3-235ENST00000628566 RIMBP3BA6NNM3 1639 aa12.99□□□□□ -0.33
NR1I3-235ENST00000628566 RIMBP3Q9UFD9 1639 aa12.99□□□□□ -0.33
NR1I3-235ENST00000628566 RAPGEF2Q9Y4G8 1499 aa12.97□□□□□ -0.33
NR1I3-235ENST00000628566 RUSC2Q8N2Y8 1516 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms