RNA–Protein interactions for RNA: ENST00000621474.4

CBWD3-217, Transcript of COBW domain containing 3, humanhuman

TSL 2

Gene CBWD3, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-217ENST00000621474 NISCHQ9Y2I1 1504 aa34.68■■■■□ 3.14
CBWD3-217ENST00000621474 CCDC180Q9P1Z9 1646 aa30.76■■■□□ 2.52
CBWD3-217ENST00000621474 ABCC9O60706 1549 aa29.87■■■□□ 2.37
CBWD3-217ENST00000621474 ZCCHC6Q5VYS8 1495 aaKnown RBP28.96■■■□□ 2.23
CBWD3-217ENST00000621474 NACADO15069 1562 aa28.84■■■□□ 2.21
CBWD3-217ENST00000621474 RB1CC1Q8TDY2 1594 aa28.81■■■□□ 2.2
CBWD3-217ENST00000621474 DCAF8L2P0C7V8 631 aa28.76■■■□□ 2.19
CBWD3-217ENST00000621474 MYO15BQ96JP2 1530 aa28.75■■■□□ 2.19
CBWD3-217ENST00000621474 DCAF1Q9Y4B6 1507 aa28.71■■■□□ 2.19
CBWD3-217ENST00000621474 UNC13AQ9UPW8 1703 aa28.3■■■□□ 2.12
CBWD3-217ENST00000621474 SCRIBQ14160 1630 aa28.08■■■□□ 2.09
CBWD3-217ENST00000621474 BICRAQ9NZM4 1560 aa28.03■■■□□ 2.08
CBWD3-217ENST00000621474 PABPN1Q86U42 306 aaKnown RBP eCLIP27.92■■■□□ 2.06
CBWD3-217ENST00000621474 SHROOM4Q9ULL8 1493 aa27.65■■■□□ 2.02
CBWD3-217ENST00000621474 DNAJC5BQ9UF47 199 aa27.28■■□□□ 1.96
CBWD3-217ENST00000621474 EIF4G1Q04637 1599 aaKnown RBP27.23■■□□□ 1.95
CBWD3-217ENST00000621474 CC2D2AQ9P2K1 1620 aa27.07■■□□□ 1.92
CBWD3-217ENST00000621474 CECR2Q9BXF3 1484 aa27.03■■□□□ 1.92
CBWD3-217ENST00000621474 SMARCA4P51532 1647 aa26.88■■□□□ 1.89
CBWD3-217ENST00000621474 BAZ1AQ9NRL2 1556 aaPredicted RBP26.85■■□□□ 1.89
CBWD3-217ENST00000621474 MROH2BQ7Z745 1585 aa26.75■■□□□ 1.87
CBWD3-217ENST00000621474 ATAD2BQ9ULI0 1458 aa26.67■■□□□ 1.86
CBWD3-217ENST00000621474 PEG3Q9GZU2 1588 aa26.65■■□□□ 1.86
CBWD3-217ENST00000621474 NCAPD3P42695 1498 aa26.61■■□□□ 1.85
CBWD3-217ENST00000621474 SMARCA2P51531 1590 aa26.61■■□□□ 1.85
CBWD3-217ENST00000621474 HMGXB3Q12766 1538 aa26.52■■□□□ 1.84
CBWD3-217ENST00000621474 RSF1Q96T23 1441 aaPredicted RBP26.49■■□□□ 1.83
CBWD3-217ENST00000621474 WIZO95785 1651 aa26.49■■□□□ 1.83
CBWD3-217ENST00000621474 BAZ1BQ9UIG0 1483 aaKnown RBP26.42■■□□□ 1.82
CBWD3-217ENST00000621474 TOP2AP11388 1531 aaKnown RBP26.18■■□□□ 1.78
CBWD3-217ENST00000621474 NESP48681 1621 aa25.95■■□□□ 1.75
CBWD3-217ENST00000621474 SUPT5HO00267 1087 aaKnown RBP25.88■■□□□ 1.73
CBWD3-217ENST00000621474 LAMC3Q9Y6N6 1575 aa25.88■■□□□ 1.73
CBWD3-217ENST00000621474 CCDC88BA6NC98 1476 aa25.87■■□□□ 1.73
CBWD3-217ENST00000621474 CADPSQ9ULU8 1353 aa25.82■■□□□ 1.72
CBWD3-217ENST00000621474 CFTRP13569 1480 aa25.75■■□□□ 1.71
CBWD3-217ENST00000621474 KIF21AQ7Z4S6 1674 aa25.68■■□□□ 1.7
CBWD3-217ENST00000621474 ERCC6Q03468 1493 aa25.68■■□□□ 1.7
CBWD3-217ENST00000621474 PDS5BQ9NTI5 1447 aa25.64■■□□□ 1.69
CBWD3-217ENST00000621474 PRDM2Q13029 1718 aa25.63■■□□□ 1.69
CBWD3-217ENST00000621474 THOC2Q8NI27 1593 aaKnown RBP25.55■■□□□ 1.68
CBWD3-217ENST00000621474 FANCD2Q9BXW9 1451 aa25.54■■□□□ 1.68
CBWD3-217ENST00000621474 CEP164Q9UPV0 1460 aa25.47■■□□□ 1.67
CBWD3-217ENST00000621474 MRC2Q9UBG0 1479 aa25.41■■□□□ 1.66
CBWD3-217ENST00000621474 CUX2O14529 1486 aa25.37■■□□□ 1.65
CBWD3-217ENST00000621474 WDR62O43379 1518 aa25.36■■□□□ 1.65
CBWD3-217ENST00000621474 URB2Q14146 1524 aaKnown RBP25.31■■□□□ 1.64
CBWD3-217ENST00000621474 TOPBP1Q92547 1522 aa25.18■■□□□ 1.62
CBWD3-217ENST00000621474 DNMBPQ6XZF7 1577 aa25.16■■□□□ 1.62
CBWD3-217ENST00000621474 ABCC8Q09428 1581 aa25.11■■□□□ 1.61
CBWD3-217ENST00000621474 CUX1P39880 1505 aa25.09■■□□□ 1.61
CBWD3-217ENST00000621474 POLA1P09884 1462 aaPredicted RBP24.99■■□□□ 1.59
CBWD3-217ENST00000621474 FGD5Q6ZNL6 1462 aa24.95■■□□□ 1.58
CBWD3-217ENST00000621474 SYNJ1O43426 1573 aa24.94■■□□□ 1.58
CBWD3-217ENST00000621474 WRNQ14191 1432 aaPredicted RBP eCLIP24.94■■□□□ 1.58
CBWD3-217ENST00000621474 TARBP1Q13395 1621 aaKnown RBP24.93■■□□□ 1.58
CBWD3-217ENST00000621474 BIVM-ERCC5R4GMW8 1640 aa24.93■■□□□ 1.58
CBWD3-217ENST00000621474 IFT140Q96RY7 1462 aa24.92■■□□□ 1.58
CBWD3-217ENST00000621474 TOP2BQ02880 1626 aa24.91■■□□□ 1.58
CBWD3-217ENST00000621474 RAD54L2Q9Y4B4 1467 aa24.87■■□□□ 1.57
CBWD3-217ENST00000621474 ZNF608Q9ULD9 1512 aaPredicted RBP24.86■■□□□ 1.57
CBWD3-217ENST00000621474 SOGA1O94964 1423 aa24.83■■□□□ 1.57
CBWD3-217ENST00000621474 WDR97A6NE52 1622 aa24.8■■□□□ 1.56
CBWD3-217ENST00000621474 EIF4G3O43432 1585 aaKnown RBP24.78■■□□□ 1.56
CBWD3-217ENST00000621474 AQRO60306 1485 aaKnown RBP eCLIP24.71■■□□□ 1.55
CBWD3-217ENST00000621474 ABCA10Q8WWZ4 1543 aa24.71■■□□□ 1.55
CBWD3-217ENST00000621474 TDRD9Q8NDG6 1382 aaKnown RBP24.69■■□□□ 1.54
CBWD3-217ENST00000621474 ABCA5Q8WWZ7 1642 aa24.64■■□□□ 1.53
CBWD3-217ENST00000621474 PBRM1Q86U86 1689 aa24.56■■□□□ 1.52
CBWD3-217ENST00000621474 GAPVD1Q14C86 1478 aa24.56■■□□□ 1.52
CBWD3-217ENST00000621474 GRIN2BQ13224 1484 aa24.52■■□□□ 1.52
CBWD3-217ENST00000621474 SNAPC4Q5SXM2 1469 aa24.48■■□□□ 1.51
CBWD3-217ENST00000621474 MAGI1Q96QZ7 1491 aaPredicted RBP24.45■■□□□ 1.5
CBWD3-217ENST00000621474 CHD1O14646 1710 aa24.44■■□□□ 1.5
CBWD3-217ENST00000621474 TRIM41Q8WV44 630 aa24.42■■□□□ 1.5
CBWD3-217ENST00000621474 ERICH3Q5RHP9 1530 aa24.41■■□□□ 1.5
CBWD3-217ENST00000621474 KIF27Q86VH2 1401 aa24.37■■□□□ 1.49
CBWD3-217ENST00000621474 ADAMTS12P58397 1594 aa24.36■■□□□ 1.49
CBWD3-217ENST00000621474 SYNJ2O15056 1496 aa24.36■■□□□ 1.49
CBWD3-217ENST00000621474 DNAJC5Q9H3Z4 198 aa24.34■■□□□ 1.49
CBWD3-217ENST00000621474 RUSC2Q8N2Y8 1516 aa24.32■■□□□ 1.48
CBWD3-217ENST00000621474 CHIC1Q5VXU3 224 aa24.32■■□□□ 1.48
CBWD3-217ENST00000621474 OSCARQ8IYS5 282 aa24.3■■□□□ 1.48
CBWD3-217ENST00000621474 IGF1RP08069 1367 aa24.29■■□□□ 1.48
CBWD3-217ENST00000621474 FBLN2P98095 1184 aa24.28■■□□□ 1.48
CBWD3-217ENST00000621474 FHAD1B1AJZ9 1412 aa24.27■■□□□ 1.48
CBWD3-217ENST00000621474 CHMP7Q8WUX9 453 aaPredicted RBP24.25■■□□□ 1.47
CBWD3-217ENST00000621474 GRIN2AQ12879 1464 aa24.24■■□□□ 1.47
CBWD3-217ENST00000621474 CUL7Q14999 1698 aa24.23■■□□□ 1.47
CBWD3-217ENST00000621474 CLASP1Q7Z460 1538 aa24.17■■□□□ 1.46
CBWD3-217ENST00000621474 CEP170Q5SW79 1584 aa24.16■■□□□ 1.46
CBWD3-217ENST00000621474 NUP160Q12769 1436 aa24.14■■□□□ 1.45
CBWD3-217ENST00000621474 CARMIL1Q5VZK9 1371 aa24.12■■□□□ 1.45
CBWD3-217ENST00000621474 EEA1Q15075 1411 aa24.02■■□□□ 1.44
CBWD3-217ENST00000621474 PRXQ9BXM0 1461 aa24.02■■□□□ 1.44
CBWD3-217ENST00000621474 RAPGEF2Q9Y4G8 1499 aa24.02■■□□□ 1.44
CBWD3-217ENST00000621474 ARHGEF11O15085 1522 aa24■■□□□ 1.43
CBWD3-217ENST00000621474 RIMBP3CA6NJZ7 1639 aa23.99■■□□□ 1.43
CBWD3-217ENST00000621474 RIMBP3BA6NNM3 1639 aa23.99■■□□□ 1.43
CBWD3-217ENST00000621474 RIMBP3Q9UFD9 1639 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 390.8 ms