RNA–Protein interactions for RNA: ENST00000621396.4

CBWD3-216, Transcript of COBW domain containing 3, humanhuman

TSL 2

Gene CBWD3, Length 2,437 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-216ENST00000621396 NISCHQ9Y2I1 1504 aa36.39■■■■□ 3.42
CBWD3-216ENST00000621396 CCDC180Q9P1Z9 1646 aa31.64■■■□□ 2.66
CBWD3-216ENST00000621396 DCAF8L2P0C7V8 631 aa30.55■■■□□ 2.48
CBWD3-216ENST00000621396 ABCC9O60706 1549 aa30.51■■■□□ 2.47
CBWD3-216ENST00000621396 ZCCHC6Q5VYS8 1495 aaKnown RBP30.5■■■□□ 2.47
CBWD3-216ENST00000621396 SHROOM4Q9ULL8 1493 aa29.91■■■□□ 2.38
CBWD3-216ENST00000621396 DCAF1Q9Y4B6 1507 aa29.9■■■□□ 2.38
CBWD3-216ENST00000621396 NACADO15069 1562 aa29.59■■■□□ 2.33
CBWD3-216ENST00000621396 MYO15BQ96JP2 1530 aa29.59■■■□□ 2.33
CBWD3-216ENST00000621396 RB1CC1Q8TDY2 1594 aa29.44■■■□□ 2.3
CBWD3-216ENST00000621396 SCRIBQ14160 1630 aa29.36■■■□□ 2.29
CBWD3-216ENST00000621396 UNC13AQ9UPW8 1703 aa28.89■■■□□ 2.21
CBWD3-216ENST00000621396 PABPN1Q86U42 306 aaKnown RBP eCLIP28.86■■■□□ 2.21
CBWD3-216ENST00000621396 SUPT5HO00267 1087 aaKnown RBP28.66■■■□□ 2.18
CBWD3-216ENST00000621396 BICRAQ9NZM4 1560 aa28.64■■■□□ 2.18
CBWD3-216ENST00000621396 CECR2Q9BXF3 1484 aa28.46■■■□□ 2.15
CBWD3-216ENST00000621396 RSF1Q96T23 1441 aaPredicted RBP28.23■■■□□ 2.11
CBWD3-216ENST00000621396 MROH2BQ7Z745 1585 aa28.21■■■□□ 2.11
CBWD3-216ENST00000621396 BAZ1AQ9NRL2 1556 aaPredicted RBP28.07■■■□□ 2.08
CBWD3-216ENST00000621396 SMARCA4P51532 1647 aa28.01■■■□□ 2.07
CBWD3-216ENST00000621396 WIZO95785 1651 aa27.97■■■□□ 2.07
CBWD3-216ENST00000621396 EIF4G1Q04637 1599 aaKnown RBP27.8■■■□□ 2.04
CBWD3-216ENST00000621396 ATAD2BQ9ULI0 1458 aa27.66■■■□□ 2.02
CBWD3-216ENST00000621396 PEG3Q9GZU2 1588 aa27.57■■■□□ 2
CBWD3-216ENST00000621396 TOP2AP11388 1531 aaKnown RBP27.53■■■□□ 2
CBWD3-216ENST00000621396 SMARCA2P51531 1590 aa27.53■■■□□ 2
CBWD3-216ENST00000621396 BAZ1BQ9UIG0 1483 aaKnown RBP27.49■■□□□ 1.99
CBWD3-216ENST00000621396 CC2D2AQ9P2K1 1620 aa27.48■■□□□ 1.99
CBWD3-216ENST00000621396 NCAPD3P42695 1498 aa27.39■■□□□ 1.98
CBWD3-216ENST00000621396 CCDC88BA6NC98 1476 aa27.37■■□□□ 1.97
CBWD3-216ENST00000621396 DNAJC5BQ9UF47 199 aa27.26■■□□□ 1.95
CBWD3-216ENST00000621396 HMGXB3Q12766 1538 aa27.26■■□□□ 1.95
CBWD3-216ENST00000621396 CHIC1Q5VXU3 224 aa27.17■■□□□ 1.94
CBWD3-216ENST00000621396 TRIM41Q8WV44 630 aa26.83■■□□□ 1.89
CBWD3-216ENST00000621396 ABCC8Q09428 1581 aa26.81■■□□□ 1.88
CBWD3-216ENST00000621396 CFTRP13569 1480 aa26.76■■□□□ 1.87
CBWD3-216ENST00000621396 CADPSQ9ULU8 1353 aa26.75■■□□□ 1.87
CBWD3-216ENST00000621396 NESP48681 1621 aa26.73■■□□□ 1.87
CBWD3-216ENST00000621396 WRNQ14191 1432 aaPredicted RBP eCLIP26.57■■□□□ 1.84
CBWD3-216ENST00000621396 FAM9AQ8IZU1 332 aaPredicted RBP26.53■■□□□ 1.84
CBWD3-216ENST00000621396 SYNJ1O43426 1573 aa26.47■■□□□ 1.83
CBWD3-216ENST00000621396 FANCD2Q9BXW9 1451 aa26.47■■□□□ 1.83
CBWD3-216ENST00000621396 LAMC3Q9Y6N6 1575 aa26.45■■□□□ 1.82
CBWD3-216ENST00000621396 PRDM2Q13029 1718 aa26.41■■□□□ 1.82
CBWD3-216ENST00000621396 CUX1P39880 1505 aa26.36■■□□□ 1.81
CBWD3-216ENST00000621396 PDS5BQ9NTI5 1447 aa26.33■■□□□ 1.81
CBWD3-216ENST00000621396 EHMT2Q96KQ7 1210 aa26.33■■□□□ 1.8
CBWD3-216ENST00000621396 LOC105371045A0A1W2PR82 267 aa26.3■■□□□ 1.8
CBWD3-216ENST00000621396 CEP164Q9UPV0 1460 aa26.29■■□□□ 1.8
CBWD3-216ENST00000621396 SOGA1O94964 1423 aa26.28■■□□□ 1.8
CBWD3-216ENST00000621396 TOP2BQ02880 1626 aa26.28■■□□□ 1.8
CBWD3-216ENST00000621396 KIF21AQ7Z4S6 1674 aa26.25■■□□□ 1.79
CBWD3-216ENST00000621396 RUSC2Q8N2Y8 1516 aa26.23■■□□□ 1.79
CBWD3-216ENST00000621396 BIVM-ERCC5R4GMW8 1640 aa26.2■■□□□ 1.78
CBWD3-216ENST00000621396 URB2Q14146 1524 aaKnown RBP26.16■■□□□ 1.78
CBWD3-216ENST00000621396 TOPBP1Q92547 1522 aa26.13■■□□□ 1.77
CBWD3-216ENST00000621396 ERCC6Q03468 1493 aa26.12■■□□□ 1.77
CBWD3-216ENST00000621396 FGD5Q6ZNL6 1462 aa26.12■■□□□ 1.77
CBWD3-216ENST00000621396 DNMBPQ6XZF7 1577 aa26.08■■□□□ 1.77
CBWD3-216ENST00000621396 RAD54L2Q9Y4B4 1467 aa26.03■■□□□ 1.76
CBWD3-216ENST00000621396 POLA1P09884 1462 aaPredicted RBP26.02■■□□□ 1.76
CBWD3-216ENST00000621396 CSRNP3Q8WYN3 585 aa26■■□□□ 1.75
CBWD3-216ENST00000621396 MRC2Q9UBG0 1479 aa25.99■■□□□ 1.75
CBWD3-216ENST00000621396 CUX2O14529 1486 aa25.93■■□□□ 1.74
CBWD3-216ENST00000621396 EEA1Q15075 1411 aa25.89■■□□□ 1.74
CBWD3-216ENST00000621396 KIF27Q86VH2 1401 aa25.88■■□□□ 1.73
CBWD3-216ENST00000621396 TDRD9Q8NDG6 1382 aaKnown RBP25.84■■□□□ 1.73
CBWD3-216ENST00000621396 WDR62O43379 1518 aa25.83■■□□□ 1.73
CBWD3-216ENST00000621396 THOC2Q8NI27 1593 aaKnown RBP25.82■■□□□ 1.72
CBWD3-216ENST00000621396 ABCA10Q8WWZ4 1543 aa25.79■■□□□ 1.72
CBWD3-216ENST00000621396 UBTFP17480 764 aaKnown RBP25.76■■□□□ 1.71
CBWD3-216ENST00000621396 IGF1RP08069 1367 aa25.74■■□□□ 1.71
CBWD3-216ENST00000621396 RAPGEF2Q9Y4G8 1499 aa25.71■■□□□ 1.71
CBWD3-216ENST00000621396 TARBP1Q13395 1621 aaKnown RBP25.71■■□□□ 1.71
CBWD3-216ENST00000621396 AQRO60306 1485 aaKnown RBP eCLIP25.69■■□□□ 1.7
CBWD3-216ENST00000621396 ZNF608Q9ULD9 1512 aaPredicted RBP25.68■■□□□ 1.7
CBWD3-216ENST00000621396 WDR97A6NE52 1622 aa25.66■■□□□ 1.7
CBWD3-216ENST00000621396 GOLGA3Q08378 1498 aa25.64■■□□□ 1.7
CBWD3-216ENST00000621396 RANGAP1P46060 587 aaPredicted RBP25.64■■□□□ 1.69
CBWD3-216ENST00000621396 GAPVD1Q14C86 1478 aa25.63■■□□□ 1.69
CBWD3-216ENST00000621396 PRXQ9BXM0 1461 aa25.63■■□□□ 1.69
CBWD3-216ENST00000621396 IFT140Q96RY7 1462 aa25.62■■□□□ 1.69
CBWD3-216ENST00000621396 CARMIL1Q5VZK9 1371 aa25.6■■□□□ 1.69
CBWD3-216ENST00000621396 KIF21BO75037 1637 aa25.6■■□□□ 1.69
CBWD3-216ENST00000621396 ABCA5Q8WWZ7 1642 aa25.58■■□□□ 1.68
CBWD3-216ENST00000621396 TNIKQ9UKE5 1360 aa25.52■■□□□ 1.68
CBWD3-216ENST00000621396 ERICH3Q5RHP9 1530 aa25.46■■□□□ 1.67
CBWD3-216ENST00000621396 CEP162Q5TB80 1403 aa25.45■■□□□ 1.67
CBWD3-216ENST00000621396 EIF4G3O43432 1585 aaKnown RBP25.45■■□□□ 1.67
CBWD3-216ENST00000621396 GRIN2BQ13224 1484 aa25.42■■□□□ 1.66
CBWD3-216ENST00000621396 PBRM1Q86U86 1689 aa25.41■■□□□ 1.66
CBWD3-216ENST00000621396 CUL7Q14999 1698 aa25.37■■□□□ 1.65
CBWD3-216ENST00000621396 SNAPC4Q5SXM2 1469 aa25.36■■□□□ 1.65
CBWD3-216ENST00000621396 FBLN2P98095 1184 aa25.35■■□□□ 1.65
CBWD3-216ENST00000621396 FHAD1B1AJZ9 1412 aa25.3■■□□□ 1.64
CBWD3-216ENST00000621396 CLIP1P30622 1438 aa25.3■■□□□ 1.64
CBWD3-216ENST00000621396 ADAMTS12P58397 1594 aa25.27■■□□□ 1.64
CBWD3-216ENST00000621396 CHMP7Q8WUX9 453 aaPredicted RBP25.25■■□□□ 1.63
CBWD3-216ENST00000621396 PPARGC1BQ86YN6 1023 aaKnown RBP25.21■■□□□ 1.63
CBWD3-216ENST00000621396 P3H3Q8IVL6 736 aa25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms