RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 NISCHQ9Y2I1 1504 aa32.75■■■□□ 2.83
LINC00540-202ENST00000616974 CCDC180Q9P1Z9 1646 aa28.98■■■□□ 2.23
LINC00540-202ENST00000616974 ABCC9O60706 1549 aa28.43■■■□□ 2.14
LINC00540-202ENST00000616974 DCAF8L2P0C7V8 631 aa27.41■■□□□ 1.98
LINC00540-202ENST00000616974 ZCCHC6Q5VYS8 1495 aaKnown RBP27.31■■□□□ 1.96
LINC00540-202ENST00000616974 RB1CC1Q8TDY2 1594 aa27.21■■□□□ 1.95
LINC00540-202ENST00000616974 NACADO15069 1562 aa27.18■■□□□ 1.94
LINC00540-202ENST00000616974 MYO15BQ96JP2 1530 aa26.97■■□□□ 1.91
LINC00540-202ENST00000616974 DCAF1Q9Y4B6 1507 aa26.95■■□□□ 1.91
LINC00540-202ENST00000616974 UNC13AQ9UPW8 1703 aa26.88■■□□□ 1.89
LINC00540-202ENST00000616974 SCRIBQ14160 1630 aa26.66■■□□□ 1.86
LINC00540-202ENST00000616974 PABPN1Q86U42 306 aaKnown RBP eCLIP26.63■■□□□ 1.85
LINC00540-202ENST00000616974 BICRAQ9NZM4 1560 aa26.57■■□□□ 1.84
LINC00540-202ENST00000616974 SHROOM4Q9ULL8 1493 aa26.17■■□□□ 1.78
LINC00540-202ENST00000616974 DNAJC5BQ9UF47 199 aa26.1■■□□□ 1.77
LINC00540-202ENST00000616974 EIF4G1Q04637 1599 aaKnown RBP25.79■■□□□ 1.72
LINC00540-202ENST00000616974 CC2D2AQ9P2K1 1620 aa25.69■■□□□ 1.7
LINC00540-202ENST00000616974 CECR2Q9BXF3 1484 aa25.65■■□□□ 1.7
LINC00540-202ENST00000616974 SMARCA4P51532 1647 aa25.42■■□□□ 1.66
LINC00540-202ENST00000616974 MROH2BQ7Z745 1585 aa25.35■■□□□ 1.65
LINC00540-202ENST00000616974 BAZ1AQ9NRL2 1556 aaPredicted RBP25.31■■□□□ 1.64
LINC00540-202ENST00000616974 ATAD2BQ9ULI0 1458 aa25.22■■□□□ 1.63
LINC00540-202ENST00000616974 WIZO95785 1651 aa25.12■■□□□ 1.61
LINC00540-202ENST00000616974 NCAPD3P42695 1498 aa25.11■■□□□ 1.61
LINC00540-202ENST00000616974 SMARCA2P51531 1590 aa25.1■■□□□ 1.61
LINC00540-202ENST00000616974 PEG3Q9GZU2 1588 aa25.08■■□□□ 1.61
LINC00540-202ENST00000616974 RSF1Q96T23 1441 aaPredicted RBP25.04■■□□□ 1.6
LINC00540-202ENST00000616974 HMGXB3Q12766 1538 aa25■■□□□ 1.59
LINC00540-202ENST00000616974 BAZ1BQ9UIG0 1483 aaKnown RBP24.99■■□□□ 1.59
LINC00540-202ENST00000616974 NESP48681 1621 aa24.71■■□□□ 1.55
LINC00540-202ENST00000616974 TOP2AP11388 1531 aaKnown RBP24.7■■□□□ 1.54
LINC00540-202ENST00000616974 SUPT5HO00267 1087 aaKnown RBP24.59■■□□□ 1.53
LINC00540-202ENST00000616974 CCDC88BA6NC98 1476 aa24.48■■□□□ 1.51
LINC00540-202ENST00000616974 LAMC3Q9Y6N6 1575 aa24.42■■□□□ 1.5
LINC00540-202ENST00000616974 KIF21AQ7Z4S6 1674 aa24.4■■□□□ 1.5
LINC00540-202ENST00000616974 CADPSQ9ULU8 1353 aa24.4■■□□□ 1.5
LINC00540-202ENST00000616974 ERCC6Q03468 1493 aa24.37■■□□□ 1.49
LINC00540-202ENST00000616974 CFTRP13569 1480 aa24.31■■□□□ 1.48
LINC00540-202ENST00000616974 THOC2Q8NI27 1593 aaKnown RBP24.21■■□□□ 1.47
LINC00540-202ENST00000616974 PDS5BQ9NTI5 1447 aa24.21■■□□□ 1.47
LINC00540-202ENST00000616974 PRDM2Q13029 1718 aa24.19■■□□□ 1.46
LINC00540-202ENST00000616974 FANCD2Q9BXW9 1451 aa24.17■■□□□ 1.46
LINC00540-202ENST00000616974 CEP164Q9UPV0 1460 aa24.09■■□□□ 1.45
LINC00540-202ENST00000616974 MRC2Q9UBG0 1479 aa24.02■■□□□ 1.44
LINC00540-202ENST00000616974 URB2Q14146 1524 aaKnown RBP24■■□□□ 1.43
LINC00540-202ENST00000616974 WDR62O43379 1518 aa23.97■■□□□ 1.43
LINC00540-202ENST00000616974 CUX2O14529 1486 aa23.97■■□□□ 1.43
LINC00540-202ENST00000616974 TOPBP1Q92547 1522 aa23.82■■□□□ 1.4
LINC00540-202ENST00000616974 DNMBPQ6XZF7 1577 aa23.76■■□□□ 1.39
LINC00540-202ENST00000616974 ABCC8Q09428 1581 aa23.76■■□□□ 1.39
LINC00540-202ENST00000616974 CUX1P39880 1505 aa23.75■■□□□ 1.39
LINC00540-202ENST00000616974 POLA1P09884 1462 aaPredicted RBP23.65■■□□□ 1.38
LINC00540-202ENST00000616974 ZNF608Q9ULD9 1512 aaPredicted RBP23.63■■□□□ 1.37
LINC00540-202ENST00000616974 SYNJ1O43426 1573 aa23.63■■□□□ 1.37
LINC00540-202ENST00000616974 RAD54L2Q9Y4B4 1467 aa23.62■■□□□ 1.37
LINC00540-202ENST00000616974 FGD5Q6ZNL6 1462 aa23.61■■□□□ 1.37
LINC00540-202ENST00000616974 TARBP1Q13395 1621 aaKnown RBP23.6■■□□□ 1.37
LINC00540-202ENST00000616974 WRNQ14191 1432 aaPredicted RBP eCLIP23.55■■□□□ 1.36
LINC00540-202ENST00000616974 IFT140Q96RY7 1462 aa23.54■■□□□ 1.36
LINC00540-202ENST00000616974 BIVM-ERCC5R4GMW8 1640 aa23.51■■□□□ 1.35
LINC00540-202ENST00000616974 TOP2BQ02880 1626 aa23.51■■□□□ 1.35
LINC00540-202ENST00000616974 SOGA1O94964 1423 aa23.49■■□□□ 1.35
LINC00540-202ENST00000616974 EIF4G3O43432 1585 aaKnown RBP23.49■■□□□ 1.35
LINC00540-202ENST00000616974 AQRO60306 1485 aaKnown RBP eCLIP23.48■■□□□ 1.35
LINC00540-202ENST00000616974 TDRD9Q8NDG6 1382 aaKnown RBP23.45■■□□□ 1.34
LINC00540-202ENST00000616974 WDR97A6NE52 1622 aa23.44■■□□□ 1.34
LINC00540-202ENST00000616974 ABCA10Q8WWZ4 1543 aa23.32■■□□□ 1.32
LINC00540-202ENST00000616974 ABCA5Q8WWZ7 1642 aa23.28■■□□□ 1.32
LINC00540-202ENST00000616974 PBRM1Q86U86 1689 aa23.27■■□□□ 1.31
LINC00540-202ENST00000616974 GAPVD1Q14C86 1478 aa23.23■■□□□ 1.31
LINC00540-202ENST00000616974 CHD1O14646 1710 aa23.23■■□□□ 1.31
LINC00540-202ENST00000616974 SNAPC4Q5SXM2 1469 aa23.21■■□□□ 1.31
LINC00540-202ENST00000616974 DNAJC5Q9H3Z4 198 aa23.18■■□□□ 1.3
LINC00540-202ENST00000616974 GRIN2BQ13224 1484 aa23.16■■□□□ 1.3
LINC00540-202ENST00000616974 FBLN2P98095 1184 aa23.14■■□□□ 1.29
LINC00540-202ENST00000616974 RUSC2Q8N2Y8 1516 aa23.09■■□□□ 1.29
LINC00540-202ENST00000616974 TRIM41Q8WV44 630 aa23.08■■□□□ 1.28
LINC00540-202ENST00000616974 MAGI1Q96QZ7 1491 aaPredicted RBP23.06■■□□□ 1.28
LINC00540-202ENST00000616974 OSCARQ8IYS5 282 aa23.04■■□□□ 1.28
LINC00540-202ENST00000616974 ADAMTS12P58397 1594 aa23.04■■□□□ 1.28
LINC00540-202ENST00000616974 SYNJ2O15056 1496 aa23.01■■□□□ 1.27
LINC00540-202ENST00000616974 ERICH3Q5RHP9 1530 aa23■■□□□ 1.27
LINC00540-202ENST00000616974 CHMP7Q8WUX9 453 aaPredicted RBP22.99■■□□□ 1.27
LINC00540-202ENST00000616974 KIF27Q86VH2 1401 aa22.98■■□□□ 1.27
LINC00540-202ENST00000616974 CHIC1Q5VXU3 224 aa22.97■■□□□ 1.27
LINC00540-202ENST00000616974 IGF1RP08069 1367 aa22.96■■□□□ 1.27
LINC00540-202ENST00000616974 GRIN2AQ12879 1464 aa22.92■■□□□ 1.26
LINC00540-202ENST00000616974 FHAD1B1AJZ9 1412 aa22.91■■□□□ 1.26
LINC00540-202ENST00000616974 CEP170Q5SW79 1584 aa22.89■■□□□ 1.26
LINC00540-202ENST00000616974 CLASP1Q7Z460 1538 aa22.86■■□□□ 1.25
LINC00540-202ENST00000616974 CUL7Q14999 1698 aa22.83■■□□□ 1.24
LINC00540-202ENST00000616974 RIMBP3CA6NJZ7 1639 aa22.81■■□□□ 1.24
LINC00540-202ENST00000616974 RIMBP3BA6NNM3 1639 aa22.81■■□□□ 1.24
LINC00540-202ENST00000616974 RIMBP3Q9UFD9 1639 aa22.81■■□□□ 1.24
LINC00540-202ENST00000616974 CARMIL1Q5VZK9 1371 aa22.79■■□□□ 1.24
LINC00540-202ENST00000616974 NUP160Q12769 1436 aa22.79■■□□□ 1.24
LINC00540-202ENST00000616974 ARHGEF11O15085 1522 aa22.78■■□□□ 1.24
LINC00540-202ENST00000616974 FAM9AQ8IZU1 332 aaPredicted RBP22.78■■□□□ 1.24
LINC00540-202ENST00000616974 ERCC6L2Q5T890 1561 aa22.75■■□□□ 1.23
LINC00540-202ENST00000616974 RAPGEF2Q9Y4G8 1499 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms