RNA–Protein interactions for RNA: ENST00000611917.1

FAM228B-207, Transcript of family with sequence similarity 228 member B, humanhuman

TSL 3

Gene FAM228B, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM228B-207ENST00000611917 NISCHQ9Y2I1 1504 aa30.12■■■□□ 2.41
FAM228B-207ENST00000611917 CCDC180Q9P1Z9 1646 aa26.7■■□□□ 1.86
FAM228B-207ENST00000611917 ABCC9O60706 1549 aa26.5■■□□□ 1.83
FAM228B-207ENST00000611917 DCAF8L2P0C7V8 631 aa25.61■■□□□ 1.69
FAM228B-207ENST00000611917 RB1CC1Q8TDY2 1594 aa25.37■■□□□ 1.65
FAM228B-207ENST00000611917 NACADO15069 1562 aa25.31■■□□□ 1.64
FAM228B-207ENST00000611917 MYO15BQ96JP2 1530 aa25.09■■□□□ 1.61
FAM228B-207ENST00000611917 ZCCHC6Q5VYS8 1495 aaKnown RBP24.96■■□□□ 1.59
FAM228B-207ENST00000611917 DCAF1Q9Y4B6 1507 aa24.89■■□□□ 1.57
FAM228B-207ENST00000611917 PABPN1Q86U42 306 aaKnown RBP eCLIP24.88■■□□□ 1.57
FAM228B-207ENST00000611917 DNAJC5BQ9UF47 199 aa24.61■■□□□ 1.53
FAM228B-207ENST00000611917 UNC13AQ9UPW8 1703 aa24.52■■□□□ 1.52
FAM228B-207ENST00000611917 BICRAQ9NZM4 1560 aa24.49■■□□□ 1.51
FAM228B-207ENST00000611917 SCRIBQ14160 1630 aa24.39■■□□□ 1.5
FAM228B-207ENST00000611917 SHROOM4Q9ULL8 1493 aa24.32■■□□□ 1.48
FAM228B-207ENST00000611917 EIF4G1Q04637 1599 aaKnown RBP23.92■■□□□ 1.42
FAM228B-207ENST00000611917 CC2D2AQ9P2K1 1620 aa23.87■■□□□ 1.41
FAM228B-207ENST00000611917 CECR2Q9BXF3 1484 aa23.87■■□□□ 1.41
FAM228B-207ENST00000611917 NCAPD3P42695 1498 aa23.43■■□□□ 1.34
FAM228B-207ENST00000611917 ATAD2BQ9ULI0 1458 aa23.36■■□□□ 1.33
FAM228B-207ENST00000611917 BAZ1AQ9NRL2 1556 aaPredicted RBP23.35■■□□□ 1.33
FAM228B-207ENST00000611917 SMARCA4P51532 1647 aa23.31■■□□□ 1.32
FAM228B-207ENST00000611917 SMARCA2P51531 1590 aa23.31■■□□□ 1.32
FAM228B-207ENST00000611917 MROH2BQ7Z745 1585 aa23.17■■□□□ 1.3
FAM228B-207ENST00000611917 BAZ1BQ9UIG0 1483 aaKnown RBP23.17■■□□□ 1.3
FAM228B-207ENST00000611917 HMGXB3Q12766 1538 aa23.15■■□□□ 1.3
FAM228B-207ENST00000611917 PEG3Q9GZU2 1588 aa23.1■■□□□ 1.29
FAM228B-207ENST00000611917 ERCC6Q03468 1493 aa22.92■■□□□ 1.26
FAM228B-207ENST00000611917 RSF1Q96T23 1441 aaPredicted RBP22.92■■□□□ 1.26
FAM228B-207ENST00000611917 WIZO95785 1651 aa22.85■■□□□ 1.25
FAM228B-207ENST00000611917 NESP48681 1621 aa22.82■■□□□ 1.24
FAM228B-207ENST00000611917 CADPSQ9ULU8 1353 aa22.79■■□□□ 1.24
FAM228B-207ENST00000611917 PDS5BQ9NTI5 1447 aa22.76■■□□□ 1.23
FAM228B-207ENST00000611917 LAMC3Q9Y6N6 1575 aa22.74■■□□□ 1.23
FAM228B-207ENST00000611917 CUX2O14529 1486 aa22.69■■□□□ 1.22
FAM228B-207ENST00000611917 TOP2AP11388 1531 aaKnown RBP22.63■■□□□ 1.21
FAM228B-207ENST00000611917 CFTRP13569 1480 aa22.52■■□□□ 1.2
FAM228B-207ENST00000611917 CCDC88BA6NC98 1476 aa22.47■■□□□ 1.19
FAM228B-207ENST00000611917 FANCD2Q9BXW9 1451 aa22.43■■□□□ 1.18
FAM228B-207ENST00000611917 DNAJC5Q9H3Z4 198 aa22.42■■□□□ 1.18
FAM228B-207ENST00000611917 MRC2Q9UBG0 1479 aa22.41■■□□□ 1.18
FAM228B-207ENST00000611917 CEP164Q9UPV0 1460 aa22.41■■□□□ 1.18
FAM228B-207ENST00000611917 SUPT5HO00267 1087 aaKnown RBP22.4■■□□□ 1.18
FAM228B-207ENST00000611917 KIF21AQ7Z4S6 1674 aa22.39■■□□□ 1.18
FAM228B-207ENST00000611917 THOC2Q8NI27 1593 aaKnown RBP22.38■■□□□ 1.17
FAM228B-207ENST00000611917 WDR62O43379 1518 aa22.26■■□□□ 1.15
FAM228B-207ENST00000611917 URB2Q14146 1524 aaKnown RBP22.16■■□□□ 1.14
FAM228B-207ENST00000611917 ABCC8Q09428 1581 aa22.13■■□□□ 1.13
FAM228B-207ENST00000611917 PRDM2Q13029 1718 aa22.05■■□□□ 1.12
FAM228B-207ENST00000611917 TOPBP1Q92547 1522 aa22.01■■□□□ 1.11
FAM228B-207ENST00000611917 IFT140Q96RY7 1462 aa21.99■■□□□ 1.11
FAM228B-207ENST00000611917 OSCARQ8IYS5 282 aa21.97■■□□□ 1.11
FAM228B-207ENST00000611917 DNMBPQ6XZF7 1577 aa21.93■■□□□ 1.1
FAM228B-207ENST00000611917 SOGA1O94964 1423 aa21.88■■□□□ 1.09
FAM228B-207ENST00000611917 ZNF608Q9ULD9 1512 aaPredicted RBP21.83■■□□□ 1.09
FAM228B-207ENST00000611917 POLA1P09884 1462 aaPredicted RBP21.81■■□□□ 1.08
FAM228B-207ENST00000611917 AQRO60306 1485 aaKnown RBP eCLIP21.78■■□□□ 1.08
FAM228B-207ENST00000611917 TDRD9Q8NDG6 1382 aaKnown RBP21.76■■□□□ 1.07
FAM228B-207ENST00000611917 RAD54L2Q9Y4B4 1467 aa21.76■■□□□ 1.07
FAM228B-207ENST00000611917 FBLN2P98095 1184 aa21.75■■□□□ 1.07
FAM228B-207ENST00000611917 FGD5Q6ZNL6 1462 aa21.73■■□□□ 1.07
FAM228B-207ENST00000611917 CUX1P39880 1505 aa21.73■■□□□ 1.07
FAM228B-207ENST00000611917 TARBP1Q13395 1621 aaKnown RBP21.69■■□□□ 1.06
FAM228B-207ENST00000611917 CHMP7Q8WUX9 453 aaPredicted RBP21.66■■□□□ 1.06
FAM228B-207ENST00000611917 WRNQ14191 1432 aaPredicted RBP eCLIP21.64■■□□□ 1.06
FAM228B-207ENST00000611917 EIF4G3O43432 1585 aaKnown RBP21.62■■□□□ 1.05
FAM228B-207ENST00000611917 TRIM41Q8WV44 630 aa21.61■■□□□ 1.05
FAM228B-207ENST00000611917 GRIN2BQ13224 1484 aa21.57■■□□□ 1.04
FAM228B-207ENST00000611917 WDR97A6NE52 1622 aa21.55■■□□□ 1.04
FAM228B-207ENST00000611917 GAPVD1Q14C86 1478 aa21.54■■□□□ 1.04
FAM228B-207ENST00000611917 ABCA10Q8WWZ4 1543 aa21.53■■□□□ 1.04
FAM228B-207ENST00000611917 SNAPC4Q5SXM2 1469 aa21.49■■□□□ 1.03
FAM228B-207ENST00000611917 MAGI1Q96QZ7 1491 aaPredicted RBP21.49■■□□□ 1.03
FAM228B-207ENST00000611917 TOP2BQ02880 1626 aa21.48■■□□□ 1.03
FAM228B-207ENST00000611917 SYNJ2O15056 1496 aa21.42■■□□□ 1.02
FAM228B-207ENST00000611917 SYNJ1O43426 1573 aa21.42■■□□□ 1.02
FAM228B-207ENST00000611917 BIVM-ERCC5R4GMW8 1640 aa21.41■■□□□ 1.02
FAM228B-207ENST00000611917 CYB5RLQ6IPT4 315 aa21.4■■□□□ 1.02
FAM228B-207ENST00000611917 CHD1O14646 1710 aa21.35■■□□□ 1.01
FAM228B-207ENST00000611917 ABCA5Q8WWZ7 1642 aa21.32■■□□□ 1
FAM228B-207ENST00000611917 FHAD1B1AJZ9 1412 aa21.31■■□□□ 1
FAM228B-207ENST00000611917 ARHGEF11O15085 1522 aa21.31■■□□□ 1
FAM228B-207ENST00000611917 RIMBP3CA6NJZ7 1639 aa21.28■■□□□ 1
FAM228B-207ENST00000611917 RIMBP3BA6NNM3 1639 aa21.28■■□□□ 1
FAM228B-207ENST00000611917 RIMBP3Q9UFD9 1639 aa21.28■■□□□ 1
FAM228B-207ENST00000611917 ERICH3Q5RHP9 1530 aa21.26■□□□□ 0.99
FAM228B-207ENST00000611917 PBRM1Q86U86 1689 aa21.26■□□□□ 0.99
FAM228B-207ENST00000611917 KIF27Q86VH2 1401 aa21.26■□□□□ 0.99
FAM228B-207ENST00000611917 IGF1RP08069 1367 aa21.23■□□□□ 0.99
FAM228B-207ENST00000611917 GRIN2AQ12879 1464 aa21.22■□□□□ 0.99
FAM228B-207ENST00000611917 CLASP1Q7Z460 1538 aa21.19■□□□□ 0.98
FAM228B-207ENST00000611917 JPH4Q96JJ6 628 aa21.17■□□□□ 0.98
FAM228B-207ENST00000611917 NUP160Q12769 1436 aa21.14■□□□□ 0.98
FAM228B-207ENST00000611917 ADAMTS12P58397 1594 aa21.14■□□□□ 0.97
FAM228B-207ENST00000611917 ARAP1Q96P48 1450 aa21.12■□□□□ 0.97
FAM228B-207ENST00000611917 CARMIL1Q5VZK9 1371 aa21.11■□□□□ 0.97
FAM228B-207ENST00000611917 TRHP20396 242 aaPredicted RBP21.09■□□□□ 0.97
FAM228B-207ENST00000611917 CEP170Q5SW79 1584 aa21.03■□□□□ 0.96
FAM228B-207ENST00000611917 PRG4Q92954 1404 aaPredicted RBP21.01■□□□□ 0.95
FAM228B-207ENST00000611917 KIAA0586Q9BVV6 1533 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms