RNA–Protein interactions for RNA: ENST00000611733.4

CLK4-215, Transcript of CDC like kinase 4, humanhuman

TSL 5 BASIC

Gene CLK4, Length 2,182 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-215ENST00000611733 NISCHQ9Y2I1 1504 aa28.44■■■□□ 2.14
CLK4-215ENST00000611733 CCDC180Q9P1Z9 1646 aa24.95■■□□□ 1.58
CLK4-215ENST00000611733 ABCC9O60706 1549 aa24.2■■□□□ 1.46
CLK4-215ENST00000611733 ZCCHC6Q5VYS8 1495 aaKnown RBP23.76■■□□□ 1.39
CLK4-215ENST00000611733 DCAF8L2P0C7V8 631 aa23.75■■□□□ 1.39
CLK4-215ENST00000611733 DCAF1Q9Y4B6 1507 aa23.45■■□□□ 1.34
CLK4-215ENST00000611733 NACADO15069 1562 aa23.4■■□□□ 1.34
CLK4-215ENST00000611733 MYO15BQ96JP2 1530 aa23.36■■□□□ 1.33
CLK4-215ENST00000611733 RB1CC1Q8TDY2 1594 aa23.33■■□□□ 1.33
CLK4-215ENST00000611733 SCRIBQ14160 1630 aa22.96■■□□□ 1.27
CLK4-215ENST00000611733 SHROOM4Q9ULL8 1493 aa22.91■■□□□ 1.26
CLK4-215ENST00000611733 UNC13AQ9UPW8 1703 aa22.84■■□□□ 1.25
CLK4-215ENST00000611733 PABPN1Q86U42 306 aaKnown RBP eCLIP22.77■■□□□ 1.24
CLK4-215ENST00000611733 BICRAQ9NZM4 1560 aa22.69■■□□□ 1.22
CLK4-215ENST00000611733 CECR2Q9BXF3 1484 aa22.2■■□□□ 1.14
CLK4-215ENST00000611733 EIF4G1Q04637 1599 aaKnown RBP22.03■■□□□ 1.12
CLK4-215ENST00000611733 MROH2BQ7Z745 1585 aa21.98■■□□□ 1.11
CLK4-215ENST00000611733 BAZ1AQ9NRL2 1556 aaPredicted RBP21.96■■□□□ 1.11
CLK4-215ENST00000611733 SMARCA4P51532 1647 aa21.94■■□□□ 1.1
CLK4-215ENST00000611733 DNAJC5BQ9UF47 199 aa21.93■■□□□ 1.1
CLK4-215ENST00000611733 RSF1Q96T23 1441 aaPredicted RBP21.89■■□□□ 1.09
CLK4-215ENST00000611733 CC2D2AQ9P2K1 1620 aa21.84■■□□□ 1.09
CLK4-215ENST00000611733 SUPT5HO00267 1087 aaKnown RBP21.78■■□□□ 1.08
CLK4-215ENST00000611733 ATAD2BQ9ULI0 1458 aa21.76■■□□□ 1.07
CLK4-215ENST00000611733 WIZO95785 1651 aa21.75■■□□□ 1.07
CLK4-215ENST00000611733 PEG3Q9GZU2 1588 aa21.68■■□□□ 1.06
CLK4-215ENST00000611733 SMARCA2P51531 1590 aa21.67■■□□□ 1.06
CLK4-215ENST00000611733 NCAPD3P42695 1498 aa21.65■■□□□ 1.06
CLK4-215ENST00000611733 BAZ1BQ9UIG0 1483 aaKnown RBP21.58■■□□□ 1.04
CLK4-215ENST00000611733 HMGXB3Q12766 1538 aa21.52■■□□□ 1.04
CLK4-215ENST00000611733 TOP2AP11388 1531 aaKnown RBP21.47■■□□□ 1.03
CLK4-215ENST00000611733 CCDC88BA6NC98 1476 aa21.31■■□□□ 1
CLK4-215ENST00000611733 NESP48681 1621 aa21.09■□□□□ 0.97
CLK4-215ENST00000611733 CADPSQ9ULU8 1353 aa21.07■□□□□ 0.96
CLK4-215ENST00000611733 CFTRP13569 1480 aa21.02■□□□□ 0.96
CLK4-215ENST00000611733 LAMC3Q9Y6N6 1575 aa20.95■□□□□ 0.94
CLK4-215ENST00000611733 PDS5BQ9NTI5 1447 aa20.83■□□□□ 0.93
CLK4-215ENST00000611733 FANCD2Q9BXW9 1451 aa20.82■□□□□ 0.92
CLK4-215ENST00000611733 PRDM2Q13029 1718 aa20.77■□□□□ 0.92
CLK4-215ENST00000611733 KIF21AQ7Z4S6 1674 aa20.76■□□□□ 0.91
CLK4-215ENST00000611733 ERCC6Q03468 1493 aa20.76■□□□□ 0.91
CLK4-215ENST00000611733 CEP164Q9UPV0 1460 aa20.72■□□□□ 0.91
CLK4-215ENST00000611733 ABCC8Q09428 1581 aa20.69■□□□□ 0.9
CLK4-215ENST00000611733 URB2Q14146 1524 aaKnown RBP20.61■□□□□ 0.89
CLK4-215ENST00000611733 MRC2Q9UBG0 1479 aa20.6■□□□□ 0.89
CLK4-215ENST00000611733 WRNQ14191 1432 aaPredicted RBP eCLIP20.59■□□□□ 0.89
CLK4-215ENST00000611733 CUX1P39880 1505 aa20.57■□□□□ 0.88
CLK4-215ENST00000611733 CHIC1Q5VXU3 224 aa20.56■□□□□ 0.88
CLK4-215ENST00000611733 THOC2Q8NI27 1593 aaKnown RBP20.56■□□□□ 0.88
CLK4-215ENST00000611733 TOPBP1Q92547 1522 aa20.54■□□□□ 0.88
CLK4-215ENST00000611733 SYNJ1O43426 1573 aa20.53■□□□□ 0.88
CLK4-215ENST00000611733 DNMBPQ6XZF7 1577 aa20.5■□□□□ 0.87
CLK4-215ENST00000611733 WDR62O43379 1518 aa20.5■□□□□ 0.87
CLK4-215ENST00000611733 TRIM41Q8WV44 630 aa20.48■□□□□ 0.87
CLK4-215ENST00000611733 TOP2BQ02880 1626 aa20.45■□□□□ 0.86
CLK4-215ENST00000611733 BIVM-ERCC5R4GMW8 1640 aa20.42■□□□□ 0.86
CLK4-215ENST00000611733 FGD5Q6ZNL6 1462 aa20.42■□□□□ 0.86
CLK4-215ENST00000611733 POLA1P09884 1462 aaPredicted RBP20.41■□□□□ 0.86
CLK4-215ENST00000611733 CUX2O14529 1486 aa20.38■□□□□ 0.85
CLK4-215ENST00000611733 RAD54L2Q9Y4B4 1467 aa20.38■□□□□ 0.85
CLK4-215ENST00000611733 SOGA1O94964 1423 aa20.35■□□□□ 0.85
CLK4-215ENST00000611733 TARBP1Q13395 1621 aaKnown RBP20.26■□□□□ 0.83
CLK4-215ENST00000611733 IFT140Q96RY7 1462 aa20.25■□□□□ 0.83
CLK4-215ENST00000611733 TDRD9Q8NDG6 1382 aaKnown RBP20.24■□□□□ 0.83
CLK4-215ENST00000611733 ZNF608Q9ULD9 1512 aaPredicted RBP20.23■□□□□ 0.83
CLK4-215ENST00000611733 ABCA10Q8WWZ4 1543 aa20.21■□□□□ 0.83
CLK4-215ENST00000611733 RUSC2Q8N2Y8 1516 aa20.19■□□□□ 0.82
CLK4-215ENST00000611733 AQRO60306 1485 aaKnown RBP eCLIP20.19■□□□□ 0.821e-8■■■□□ 18.8
CLK4-215ENST00000611733 WDR97A6NE52 1622 aa20.15■□□□□ 0.82
CLK4-215ENST00000611733 FAM9AQ8IZU1 332 aaPredicted RBP20.15■□□□□ 0.82
CLK4-215ENST00000611733 KIF27Q86VH2 1401 aa20.1■□□□□ 0.81
CLK4-215ENST00000611733 GAPVD1Q14C86 1478 aa20.09■□□□□ 0.81
CLK4-215ENST00000611733 EIF4G3O43432 1585 aaKnown RBP20.08■□□□□ 0.8
CLK4-215ENST00000611733 ABCA5Q8WWZ7 1642 aa20.07■□□□□ 0.8
CLK4-215ENST00000611733 IGF1RP08069 1367 aa20.04■□□□□ 0.8
CLK4-215ENST00000611733 GRIN2BQ13224 1484 aa20■□□□□ 0.79
CLK4-215ENST00000611733 CSRNP3Q8WYN3 585 aa20■□□□□ 0.79
CLK4-215ENST00000611733 PBRM1Q86U86 1689 aa19.96■□□□□ 0.79
CLK4-215ENST00000611733 EEA1Q15075 1411 aa19.95■□□□□ 0.78
CLK4-215ENST00000611733 SNAPC4Q5SXM2 1469 aa19.95■□□□□ 0.78
CLK4-215ENST00000611733 ERICH3Q5RHP9 1530 aa19.94■□□□□ 0.78
CLK4-215ENST00000611733 EHMT2Q96KQ7 1210 aa19.92■□□□□ 0.78
CLK4-215ENST00000611733 CARMIL1Q5VZK9 1371 aa19.91■□□□□ 0.78
CLK4-215ENST00000611733 FBLN2P98095 1184 aa19.88■□□□□ 0.77
CLK4-215ENST00000611733 MAGI1Q96QZ7 1491 aaPredicted RBP19.87■□□□□ 0.77
CLK4-215ENST00000611733 PRXQ9BXM0 1461 aa19.85■□□□□ 0.77
CLK4-215ENST00000611733 FHAD1B1AJZ9 1412 aa19.85■□□□□ 0.77
CLK4-215ENST00000611733 ADAMTS12P58397 1594 aa19.85■□□□□ 0.77
CLK4-215ENST00000611733 CHMP7Q8WUX9 453 aaPredicted RBP19.84■□□□□ 0.77
CLK4-215ENST00000611733 SYNJ2O15056 1496 aa19.82■□□□□ 0.76
CLK4-215ENST00000611733 LOC105371045A0A1W2PR82 267 aa19.81■□□□□ 0.76
CLK4-215ENST00000611733 CUL7Q14999 1698 aa19.81■□□□□ 0.76
CLK4-215ENST00000611733 RAPGEF2Q9Y4G8 1499 aa19.8■□□□□ 0.76
CLK4-215ENST00000611733 GRIN2AQ12879 1464 aa19.76■□□□□ 0.75
CLK4-215ENST00000611733 CHD1O14646 1710 aa19.74■□□□□ 0.75
CLK4-215ENST00000611733 KIF21BO75037 1637 aa19.73■□□□□ 0.75
CLK4-215ENST00000611733 UBTFP17480 764 aaKnown RBP19.7■□□□□ 0.74
CLK4-215ENST00000611733 GOLGA3Q08378 1498 aa19.68■□□□□ 0.74
CLK4-215ENST00000611733 CEP170Q5SW79 1584 aa19.66■□□□□ 0.74
CLK4-215ENST00000611733 OSCARQ8IYS5 282 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms