RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 NISCHQ9Y2I1 1504 aa24.67■■□□□ 1.54
SYNE1-240ENST00000610489 CCDC180Q9P1Z9 1646 aa21.86■■□□□ 1.09
SYNE1-240ENST00000610489 CHIC1Q5VXU3 224 aa21.69■■□□□ 1.06
SYNE1-240ENST00000610489 AEBP2Q6ZN18 517 aaPredicted RBP21.41■■□□□ 1.02
SYNE1-240ENST00000610489 ABCC9O60706 1549 aa21.05■□□□□ 0.96
SYNE1-240ENST00000610489 ZCCHC6Q5VYS8 1495 aaKnown RBP20.63■□□□□ 0.89
SYNE1-240ENST00000610489 NACADO15069 1562 aa20.45■□□□□ 0.86
SYNE1-240ENST00000610489 DCAF1Q9Y4B6 1507 aa20.44■□□□□ 0.86
SYNE1-240ENST00000610489 DCAF8L2P0C7V8 631 aa20.43■□□□□ 0.86
SYNE1-240ENST00000610489 MYO15BQ96JP2 1530 aa20.41■□□□□ 0.86
SYNE1-240ENST00000610489 RB1CC1Q8TDY2 1594 aa20.4■□□□□ 0.86
SYNE1-240ENST00000610489 UNC13AQ9UPW8 1703 aa20.01■□□□□ 0.79
SYNE1-240ENST00000610489 SCRIBQ14160 1630 aa19.94■□□□□ 0.78
SYNE1-240ENST00000610489 BICRAQ9NZM4 1560 aa19.78■□□□□ 0.76
SYNE1-240ENST00000610489 PABPN1Q86U42 306 aaKnown RBP eCLIP19.69■□□□□ 0.74
SYNE1-240ENST00000610489 SHROOM4Q9ULL8 1493 aa19.63■□□□□ 0.73
SYNE1-240ENST00000610489 PHF23Q9BUL5 403 aaPredicted RBP19.24■□□□□ 0.67
SYNE1-240ENST00000610489 EIF4G1Q04637 1599 aaKnown RBP19.23■□□□□ 0.67
SYNE1-240ENST00000610489 CECR2Q9BXF3 1484 aa19.17■□□□□ 0.66
SYNE1-240ENST00000610489 SMARCA4P51532 1647 aa19.11■□□□□ 0.65
SYNE1-240ENST00000610489 BAZ1AQ9NRL2 1556 aaPredicted RBP19.11■□□□□ 0.65
SYNE1-240ENST00000610489 CC2D2AQ9P2K1 1620 aa19.08■□□□□ 0.65
SYNE1-240ENST00000610489 DNAJC5BQ9UF47 199 aa19.02■□□□□ 0.64
SYNE1-240ENST00000610489 MROH2BQ7Z745 1585 aa19.02■□□□□ 0.64
SYNE1-240ENST00000610489 PEG3Q9GZU2 1588 aa18.92■□□□□ 0.62
SYNE1-240ENST00000610489 SMARCA2P51531 1590 aa18.91■□□□□ 0.62
SYNE1-240ENST00000610489 ATAD2BQ9ULI0 1458 aa18.9■□□□□ 0.62
SYNE1-240ENST00000610489 RSF1Q96T23 1441 aaPredicted RBP18.89■□□□□ 0.61
SYNE1-240ENST00000610489 WIZO95785 1651 aa18.85■□□□□ 0.61
SYNE1-240ENST00000610489 NCAPD3P42695 1498 aa18.84■□□□□ 0.61
SYNE1-240ENST00000610489 HMGXB3Q12766 1538 aa18.8■□□□□ 0.6
SYNE1-240ENST00000610489 BAZ1BQ9UIG0 1483 aaKnown RBP18.76■□□□□ 0.59
SYNE1-240ENST00000610489 TOP2AP11388 1531 aaKnown RBP18.66■□□□□ 0.58
SYNE1-240ENST00000610489 SUPT5HO00267 1087 aaKnown RBP18.6■□□□□ 0.57
SYNE1-240ENST00000610489 CCDC88BA6NC98 1476 aa18.42■□□□□ 0.54
SYNE1-240ENST00000610489 LAMC3Q9Y6N6 1575 aa18.32■□□□□ 0.52
SYNE1-240ENST00000610489 NESP48681 1621 aa18.31■□□□□ 0.52
SYNE1-240ENST00000610489 CADPSQ9ULU8 1353 aa18.3■□□□□ 0.52
SYNE1-240ENST00000610489 CFTRP13569 1480 aa18.27■□□□□ 0.51
SYNE1-240ENST00000610489 PRDM2Q13029 1718 aa18.24■□□□□ 0.51
SYNE1-240ENST00000610489 PDS5BQ9NTI5 1447 aa18.16■□□□□ 0.5
SYNE1-240ENST00000610489 KIF21AQ7Z4S6 1674 aa18.15■□□□□ 0.5
SYNE1-240ENST00000610489 ERCC6Q03468 1493 aa18.12■□□□□ 0.49
SYNE1-240ENST00000610489 FANCD2Q9BXW9 1451 aa18.1■□□□□ 0.49
SYNE1-240ENST00000610489 CEP164Q9UPV0 1460 aa18.06■□□□□ 0.48
SYNE1-240ENST00000610489 THOC2Q8NI27 1593 aaKnown RBP18■□□□□ 0.47
SYNE1-240ENST00000610489 PLPPR3Q6T4P5 718 aa17.99■□□□□ 0.47
SYNE1-240ENST00000610489 MRC2Q9UBG0 1479 aa17.97■□□□□ 0.47
SYNE1-240ENST00000610489 SENP3Q9H4L4 574 aaPredicted RBP17.94■□□□□ 0.46
SYNE1-240ENST00000610489 WDR62O43379 1518 aa17.92■□□□□ 0.46
SYNE1-240ENST00000610489 URB2Q14146 1524 aaKnown RBP17.91■□□□□ 0.46
SYNE1-240ENST00000610489 DNMBPQ6XZF7 1577 aa17.87■□□□□ 0.45
SYNE1-240ENST00000610489 ABCC8Q09428 1581 aa17.86■□□□□ 0.45
SYNE1-240ENST00000610489 TOPBP1Q92547 1522 aa17.85■□□□□ 0.45
SYNE1-240ENST00000610489 CUX1P39880 1505 aa17.84■□□□□ 0.45
SYNE1-240ENST00000610489 CUX2O14529 1486 aa17.83■□□□□ 0.45
SYNE1-240ENST00000610489 WRNQ14191 1432 aaPredicted RBP eCLIP17.81■□□□□ 0.44
SYNE1-240ENST00000610489 SYNJ1O43426 1573 aa17.78■□□□□ 0.44
SYNE1-240ENST00000610489 BIVM-ERCC5R4GMW8 1640 aa17.78■□□□□ 0.44
SYNE1-240ENST00000610489 TOP2BQ02880 1626 aa17.77■□□□□ 0.44
SYNE1-240ENST00000610489 POLA1P09884 1462 aaPredicted RBP17.72■□□□□ 0.43
SYNE1-240ENST00000610489 FGD5Q6ZNL6 1462 aa17.72■□□□□ 0.43
SYNE1-240ENST00000610489 IFT140Q96RY7 1462 aa17.66■□□□□ 0.42
SYNE1-240ENST00000610489 TARBP1Q13395 1621 aaKnown RBP17.66■□□□□ 0.42
SYNE1-240ENST00000610489 RAD54L2Q9Y4B4 1467 aa17.63■□□□□ 0.41
SYNE1-240ENST00000610489 SOGA1O94964 1423 aa17.62■□□□□ 0.41
SYNE1-240ENST00000610489 WDR97A6NE52 1622 aa17.61■□□□□ 0.41
SYNE1-240ENST00000610489 ABCA10Q8WWZ4 1543 aa17.56■□□□□ 0.4
SYNE1-240ENST00000610489 TRIM41Q8WV44 630 aa17.56■□□□□ 0.4
SYNE1-240ENST00000610489 ZNF608Q9ULD9 1512 aaPredicted RBP17.55■□□□□ 0.4
SYNE1-240ENST00000610489 EIF4G3O43432 1585 aaKnown RBP17.54■□□□□ 0.4
SYNE1-240ENST00000610489 ABCA5Q8WWZ7 1642 aa17.49■□□□□ 0.39
SYNE1-240ENST00000610489 TDRD9Q8NDG6 1382 aaKnown RBP17.49■□□□□ 0.39
SYNE1-240ENST00000610489 AQRO60306 1485 aaKnown RBP eCLIP17.48■□□□□ 0.39
SYNE1-240ENST00000610489 PBRM1Q86U86 1689 aa17.45■□□□□ 0.38
SYNE1-240ENST00000610489 GAPVD1Q14C86 1478 aa17.45■□□□□ 0.38
SYNE1-240ENST00000610489 KIF27Q86VH2 1401 aa17.41■□□□□ 0.38
SYNE1-240ENST00000610489 GRIN2BQ13224 1484 aa17.4■□□□□ 0.38
SYNE1-240ENST00000610489 ERICH3Q5RHP9 1530 aa17.36■□□□□ 0.37
SYNE1-240ENST00000610489 SNAPC4Q5SXM2 1469 aa17.35■□□□□ 0.37
SYNE1-240ENST00000610489 RUSC2Q8N2Y8 1516 aa17.34■□□□□ 0.37
SYNE1-240ENST00000610489 MAGI1Q96QZ7 1491 aaPredicted RBP17.34■□□□□ 0.37
SYNE1-240ENST00000610489 ADAMTS12P58397 1594 aa17.31■□□□□ 0.36
SYNE1-240ENST00000610489 CUL7Q14999 1698 aa17.29■□□□□ 0.36
SYNE1-240ENST00000610489 IGF1RP08069 1367 aa17.28■□□□□ 0.36
SYNE1-240ENST00000610489 CHD1O14646 1710 aa17.28■□□□□ 0.36
SYNE1-240ENST00000610489 EEA1Q15075 1411 aa17.27■□□□□ 0.36
SYNE1-240ENST00000610489 SYNJ2O15056 1496 aa17.26■□□□□ 0.35
SYNE1-240ENST00000610489 FHAD1B1AJZ9 1412 aa17.25■□□□□ 0.35
SYNE1-240ENST00000610489 CARMIL1Q5VZK9 1371 aa17.2■□□□□ 0.34
SYNE1-240ENST00000610489 GRIN2AQ12879 1464 aa17.19■□□□□ 0.34
SYNE1-240ENST00000610489 FBLN2P98095 1184 aa17.19■□□□□ 0.34
SYNE1-240ENST00000610489 CHMP7Q8WUX9 453 aaPredicted RBP17.19■□□□□ 0.34
SYNE1-240ENST00000610489 FAM9AQ8IZU1 332 aaPredicted RBP17.18■□□□□ 0.34
SYNE1-240ENST00000610489 CSRNP3Q8WYN3 585 aa17.17■□□□□ 0.34
SYNE1-240ENST00000610489 PRXQ9BXM0 1461 aa17.16■□□□□ 0.34
SYNE1-240ENST00000610489 RAPGEF2Q9Y4G8 1499 aa17.14■□□□□ 0.33
SYNE1-240ENST00000610489 CEP170Q5SW79 1584 aa17.11■□□□□ 0.33
SYNE1-240ENST00000610489 KIF21BO75037 1637 aa17.11■□□□□ 0.33
SYNE1-240ENST00000610489 OSCARQ8IYS5 282 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms