RNA–Protein interactions for RNA: ENST00000606055.1

LINC00458-204, long intergenic non-protein coding RNA 458, humanhuman

TSL 3

Gene LINC00458, Length 425 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00458-204ENST00000606055 NISCHQ9Y2I1 1504 aa17.04■□□□□ 0.32
LINC00458-204ENST00000606055 CCDC180Q9P1Z9 1646 aa15.23■□□□□ 0.03
LINC00458-204ENST00000606055 ABCC9O60706 1549 aa14.78□□□□□ -0.04
LINC00458-204ENST00000606055 RB1CC1Q8TDY2 1594 aa14.29□□□□□ -0.12
LINC00458-204ENST00000606055 ZCCHC6Q5VYS8 1495 aaKnown RBP14.26□□□□□ -0.13
LINC00458-204ENST00000606055 NACADO15069 1562 aa14.26□□□□□ -0.13
LINC00458-204ENST00000606055 MYO15BQ96JP2 1530 aa14.25□□□□□ -0.13
LINC00458-204ENST00000606055 DCAF1Q9Y4B6 1507 aa14.25□□□□□ -0.13
LINC00458-204ENST00000606055 DCAF8L2P0C7V8 631 aa14.2□□□□□ -0.14
LINC00458-204ENST00000606055 UNC13AQ9UPW8 1703 aa14.06□□□□□ -0.16
LINC00458-204ENST00000606055 SCRIBQ14160 1630 aa13.86□□□□□ -0.19
LINC00458-204ENST00000606055 DNAJC5BQ9UF47 199 aa13.81□□□□□ -0.2
LINC00458-204ENST00000606055 BICRAQ9NZM4 1560 aa13.8□□□□□ -0.2
LINC00458-204ENST00000606055 PABPN1Q86U42 306 aaKnown RBP eCLIP13.77□□□□□ -0.21
LINC00458-204ENST00000606055 SHROOM4Q9ULL8 1493 aa13.68□□□□□ -0.22
LINC00458-204ENST00000606055 EIF4G1Q04637 1599 aaKnown RBP13.45□□□□□ -0.26
LINC00458-204ENST00000606055 CC2D2AQ9P2K1 1620 aa13.42□□□□□ -0.26
LINC00458-204ENST00000606055 CECR2Q9BXF3 1484 aa13.29□□□□□ -0.28
LINC00458-204ENST00000606055 SMARCA4P51532 1647 aa13.25□□□□□ -0.29
LINC00458-204ENST00000606055 BAZ1AQ9NRL2 1556 aaPredicted RBP13.22□□□□□ -0.29
LINC00458-204ENST00000606055 DNAJC5Q9H3Z4 198 aa13.17□□□□□ -0.3
LINC00458-204ENST00000606055 SMARCA2P51531 1590 aa13.15□□□□□ -0.3
LINC00458-204ENST00000606055 MROH2BQ7Z745 1585 aa13.11□□□□□ -0.31
LINC00458-204ENST00000606055 PEG3Q9GZU2 1588 aa13.11□□□□□ -0.31
LINC00458-204ENST00000606055 ATAD2BQ9ULI0 1458 aa13.1□□□□□ -0.31
LINC00458-204ENST00000606055 NCAPD3P42695 1498 aa13.09□□□□□ -0.31
LINC00458-204ENST00000606055 HMGXB3Q12766 1538 aa13.08□□□□□ -0.31
LINC00458-204ENST00000606055 RSF1Q96T23 1441 aaPredicted RBP13.05□□□□□ -0.32
LINC00458-204ENST00000606055 BAZ1BQ9UIG0 1483 aaKnown RBP13.04□□□□□ -0.32
LINC00458-204ENST00000606055 WIZO95785 1651 aa13.02□□□□□ -0.32
LINC00458-204ENST00000606055 TOP2AP11388 1531 aaKnown RBP12.88□□□□□ -0.35
LINC00458-204ENST00000606055 LAMC3Q9Y6N6 1575 aa12.81□□□□□ -0.36
LINC00458-204ENST00000606055 ERCC6Q03468 1493 aa12.78□□□□□ -0.36
LINC00458-204ENST00000606055 NESP48681 1621 aa12.78□□□□□ -0.36
LINC00458-204ENST00000606055 PRDM2Q13029 1718 aa12.76□□□□□ -0.37
LINC00458-204ENST00000606055 KIF21AQ7Z4S6 1674 aa12.75□□□□□ -0.37
LINC00458-204ENST00000606055 SUPT5HO00267 1087 aaKnown RBP12.74□□□□□ -0.37
LINC00458-204ENST00000606055 CADPSQ9ULU8 1353 aa12.7□□□□□ -0.38
LINC00458-204ENST00000606055 PDS5BQ9NTI5 1447 aa12.69□□□□□ -0.38
LINC00458-204ENST00000606055 CCDC88BA6NC98 1476 aa12.68□□□□□ -0.38
LINC00458-204ENST00000606055 THOC2Q8NI27 1593 aaKnown RBP12.64□□□□□ -0.39
LINC00458-204ENST00000606055 CFTRP13569 1480 aa12.64□□□□□ -0.39
LINC00458-204ENST00000606055 CUX2O14529 1486 aa12.62□□□□□ -0.39
LINC00458-204ENST00000606055 CEP164Q9UPV0 1460 aa12.6□□□□□ -0.39
LINC00458-204ENST00000606055 FANCD2Q9BXW9 1451 aa12.59□□□□□ -0.39
LINC00458-204ENST00000606055 MRC2Q9UBG0 1479 aa12.57□□□□□ -0.4
LINC00458-204ENST00000606055 WDR62O43379 1518 aa12.52□□□□□ -0.4
LINC00458-204ENST00000606055 URB2Q14146 1524 aaKnown RBP12.46□□□□□ -0.42
LINC00458-204ENST00000606055 ABCC8Q09428 1581 aa12.43□□□□□ -0.42
LINC00458-204ENST00000606055 DNMBPQ6XZF7 1577 aa12.43□□□□□ -0.42
LINC00458-204ENST00000606055 TOPBP1Q92547 1522 aa12.4□□□□□ -0.42
LINC00458-204ENST00000606055 IFT140Q96RY7 1462 aa12.33□□□□□ -0.44
LINC00458-204ENST00000606055 WRNQ14191 1432 aaPredicted RBP eCLIP12.3□□□□□ -0.44
LINC00458-204ENST00000606055 CUX1P39880 1505 aa12.3□□□□□ -0.44
LINC00458-204ENST00000606055 POLA1P09884 1462 aaPredicted RBP12.28□□□□□ -0.44
LINC00458-204ENST00000606055 TARBP1Q13395 1621 aaKnown RBP12.28□□□□□ -0.44
LINC00458-204ENST00000606055 BIVM-ERCC5R4GMW8 1640 aa12.27□□□□□ -0.44
LINC00458-204ENST00000606055 FGD5Q6ZNL6 1462 aa12.27□□□□□ -0.45
LINC00458-204ENST00000606055 EIF4G3O43432 1585 aaKnown RBP12.26□□□□□ -0.45
LINC00458-204ENST00000606055 TOP2BQ02880 1626 aa12.26□□□□□ -0.45
LINC00458-204ENST00000606055 WDR97A6NE52 1622 aa12.24□□□□□ -0.45
LINC00458-204ENST00000606055 TRIM41Q8WV44 630 aa12.24□□□□□ -0.45
LINC00458-204ENST00000606055 ZNF608Q9ULD9 1512 aaPredicted RBP12.23□□□□□ -0.45
LINC00458-204ENST00000606055 SYNJ1O43426 1573 aa12.22□□□□□ -0.45
LINC00458-204ENST00000606055 SOGA1O94964 1423 aa12.22□□□□□ -0.45
LINC00458-204ENST00000606055 RAD54L2Q9Y4B4 1467 aa12.21□□□□□ -0.45
LINC00458-204ENST00000606055 PBRM1Q86U86 1689 aa12.19□□□□□ -0.46
LINC00458-204ENST00000606055 CHD1O14646 1710 aa12.17□□□□□ -0.46
LINC00458-204ENST00000606055 AQRO60306 1485 aaKnown RBP eCLIP12.16□□□□□ -0.46
LINC00458-204ENST00000606055 ABCA10Q8WWZ4 1543 aa12.15□□□□□ -0.46
LINC00458-204ENST00000606055 CHIC1Q5VXU3 224 aa12.14□□□□□ -0.47
LINC00458-204ENST00000606055 ABCA5Q8WWZ7 1642 aa12.14□□□□□ -0.47
LINC00458-204ENST00000606055 TDRD9Q8NDG6 1382 aaKnown RBP12.13□□□□□ -0.47
LINC00458-204ENST00000606055 GRIN2BQ13224 1484 aa12.1□□□□□ -0.47
LINC00458-204ENST00000606055 GAPVD1Q14C86 1478 aa12.1□□□□□ -0.47
LINC00458-204ENST00000606055 SNAPC4Q5SXM2 1469 aa12.08□□□□□ -0.47
LINC00458-204ENST00000606055 MAGI1Q96QZ7 1491 aaPredicted RBP12.08□□□□□ -0.47
LINC00458-204ENST00000606055 EEA1Q15075 1411 aa12.08□□□□□ -0.48
LINC00458-204ENST00000606055 OSCARQ8IYS5 282 aa12.06□□□□□ -0.48
LINC00458-204ENST00000606055 KIF27Q86VH2 1401 aa12.05□□□□□ -0.48
LINC00458-204ENST00000606055 FBLN2P98095 1184 aa12.04□□□□□ -0.48
LINC00458-204ENST00000606055 ERICH3Q5RHP9 1530 aa12.02□□□□□ -0.48
LINC00458-204ENST00000606055 ADAMTS12P58397 1594 aa12.02□□□□□ -0.49
LINC00458-204ENST00000606055 SYNJ2O15056 1496 aa12.02□□□□□ -0.49
LINC00458-204ENST00000606055 CHMP7Q8WUX9 453 aaPredicted RBP12□□□□□ -0.49
LINC00458-204ENST00000606055 CUL7Q14999 1698 aa11.98□□□□□ -0.49
LINC00458-204ENST00000606055 FHAD1B1AJZ9 1412 aa11.96□□□□□ -0.49
LINC00458-204ENST00000606055 IGF1RP08069 1367 aa11.96□□□□□ -0.49
LINC00458-204ENST00000606055 RIMBP3CA6NJZ7 1639 aa11.94□□□□□ -0.5
LINC00458-204ENST00000606055 RIMBP3BA6NNM3 1639 aa11.94□□□□□ -0.5
LINC00458-204ENST00000606055 RIMBP3Q9UFD9 1639 aa11.94□□□□□ -0.5
LINC00458-204ENST00000606055 GRIN2AQ12879 1464 aa11.94□□□□□ -0.5
LINC00458-204ENST00000606055 CLASP1Q7Z460 1538 aa11.93□□□□□ -0.5
LINC00458-204ENST00000606055 CSRNP3Q8WYN3 585 aa11.91□□□□□ -0.5
LINC00458-204ENST00000606055 PRXQ9BXM0 1461 aa11.9□□□□□ -0.5
LINC00458-204ENST00000606055 ARHGEF11O15085 1522 aa11.9□□□□□ -0.5
LINC00458-204ENST00000606055 CEP170Q5SW79 1584 aa11.89□□□□□ -0.51
LINC00458-204ENST00000606055 CARMIL1Q5VZK9 1371 aa11.88□□□□□ -0.51
LINC00458-204ENST00000606055 RUSC2Q8N2Y8 1516 aa11.87□□□□□ -0.51
LINC00458-204ENST00000606055 NUP160Q12769 1436 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms