RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 NISCHQ9Y2I1 1504 aa46.69■■■■■ 5.07
UPF1-212ENST00000601689 CCDC180Q9P1Z9 1646 aa41.59■■■■■ 4.25
UPF1-212ENST00000601689 ABCC9O60706 1549 aa40.7■■■■■ 4.11
UPF1-212ENST00000601689 DCAF8L2P0C7V8 631 aa39.23■■■■□ 3.87
UPF1-212ENST00000601689 RB1CC1Q8TDY2 1594 aa39.22■■■■□ 3.87
UPF1-212ENST00000601689 NACADO15069 1562 aa39.15■■■■□ 3.86
UPF1-212ENST00000601689 MYO15BQ96JP2 1530 aa38.86■■■■□ 3.81
UPF1-212ENST00000601689 ZCCHC6Q5VYS8 1495 aaKnown RBP38.86■■■■□ 3.81
UPF1-212ENST00000601689 DCAF1Q9Y4B6 1507 aa38.66■■■■□ 3.78
UPF1-212ENST00000601689 UNC13AQ9UPW8 1703 aa38.22■■■■□ 3.71
UPF1-212ENST00000601689 PABPN1Q86U42 306 aaKnown RBP eCLIP38.03■■■■□ 3.68
UPF1-212ENST00000601689 SCRIBQ14160 1630 aa37.9■■■■□ 3.66
UPF1-212ENST00000601689 BICRAQ9NZM4 1560 aa37.84■■■■□ 3.65
UPF1-212ENST00000601689 SHROOM4Q9ULL8 1493 aa37.62■■■■□ 3.61
UPF1-212ENST00000601689 DNAJC5BQ9UF47 199 aa37.26■■■■□ 3.56
UPF1-212ENST00000601689 EIF4G1Q04637 1599 aaKnown RBP36.95■■■■□ 3.51
UPF1-212ENST00000601689 CC2D2AQ9P2K1 1620 aa36.82■■■■□ 3.49
UPF1-212ENST00000601689 CECR2Q9BXF3 1484 aa36.61■■■■□ 3.45
UPF1-212ENST00000601689 BAZ1AQ9NRL2 1556 aaPredicted RBP36.27■■■■□ 3.4
UPF1-212ENST00000601689 SMARCA4P51532 1647 aa36.25■■■■□ 3.39
UPF1-212ENST00000601689 SMARCA2P51531 1590 aa36.1■■■■□ 3.37
UPF1-212ENST00000601689 NCAPD3P42695 1498 aa36.06■■■■□ 3.36
UPF1-212ENST00000601689 ATAD2BQ9ULI0 1458 aa36.05■■■■□ 3.36
UPF1-212ENST00000601689 MROH2BQ7Z745 1585 aa35.93■■■■□ 3.34
UPF1-212ENST00000601689 HMGXB3Q12766 1538 aa35.89■■■■□ 3.34
UPF1-212ENST00000601689 PEG3Q9GZU2 1588 aa35.88■■■■□ 3.33
UPF1-212ENST00000601689 BAZ1BQ9UIG0 1483 aaKnown RBP35.84■■■■□ 3.33
UPF1-212ENST00000601689 WIZO95785 1651 aa35.59■■■■□ 3.29
UPF1-212ENST00000601689 RSF1Q96T23 1441 aaPredicted RBP35.53■■■■□ 3.28
UPF1-212ENST00000601689 TOP2AP11388 1531 aaKnown RBP35.23■■■■□ 3.23
UPF1-212ENST00000601689 ERCC6Q03468 1493 aa35.22■■■■□ 3.23
UPF1-212ENST00000601689 LAMC3Q9Y6N6 1575 aa35.19■■■■□ 3.22
UPF1-212ENST00000601689 NESP48681 1621 aa35.14■■■■□ 3.22
UPF1-212ENST00000601689 CADPSQ9ULU8 1353 aa35.05■■■■□ 3.2
UPF1-212ENST00000601689 PDS5BQ9NTI5 1447 aa35■■■■□ 3.19
UPF1-212ENST00000601689 CUX2O14529 1486 aa34.8■■■■□ 3.16
UPF1-212ENST00000601689 CCDC88BA6NC98 1476 aa34.79■■■■□ 3.16
UPF1-212ENST00000601689 CFTRP13569 1480 aa34.78■■■■□ 3.16
UPF1-212ENST00000601689 KIF21AQ7Z4S6 1674 aa34.78■■■■□ 3.16
UPF1-212ENST00000601689 SUPT5HO00267 1087 aaKnown RBP34.74■■■■□ 3.15
UPF1-212ENST00000601689 FANCD2Q9BXW9 1451 aa34.64■■■■□ 3.14
UPF1-212ENST00000601689 CEP164Q9UPV0 1460 aa34.64■■■■□ 3.14
UPF1-212ENST00000601689 THOC2Q8NI27 1593 aaKnown RBP34.63■■■■□ 3.13
UPF1-212ENST00000601689 PRDM2Q13029 1718 aa34.6■■■■□ 3.13
UPF1-212ENST00000601689 MRC2Q9UBG0 1479 aa34.56■■■■□ 3.12
UPF1-212ENST00000601689 WDR62O43379 1518 aa34.4■■■■□ 3.1
UPF1-212ENST00000601689 URB2Q14146 1524 aaKnown RBP34.2■■■■□ 3.07
UPF1-212ENST00000601689 ABCC8Q09428 1581 aa34.19■■■■□ 3.06
UPF1-212ENST00000601689 TOPBP1Q92547 1522 aa34.05■■■■□ 3.04
UPF1-212ENST00000601689 DNMBPQ6XZF7 1577 aa34.03■■■■□ 3.04
UPF1-212ENST00000601689 IFT140Q96RY7 1462 aa33.91■■■■□ 3.02
UPF1-212ENST00000601689 DNAJC5Q9H3Z4 198 aa33.76■■■□□ 2.99
UPF1-212ENST00000601689 POLA1P09884 1462 aaPredicted RBP33.74■■■□□ 2.99
UPF1-212ENST00000601689 CUX1P39880 1505 aa33.72■■■□□ 2.99
UPF1-212ENST00000601689 SOGA1O94964 1423 aa33.69■■■□□ 2.98
UPF1-212ENST00000601689 FGD5Q6ZNL6 1462 aa33.67■■■□□ 2.98
UPF1-212ENST00000601689 TARBP1Q13395 1621 aaKnown RBP33.64■■■□□ 2.98
UPF1-212ENST00000601689 ZNF608Q9ULD9 1512 aaPredicted RBP33.63■■■□□ 2.97
UPF1-212ENST00000601689 WRNQ14191 1432 aaPredicted RBP eCLIP33.6■■■□□ 2.97
UPF1-212ENST00000601689 RAD54L2Q9Y4B4 1467 aa33.57■■■□□ 2.97
UPF1-212ENST00000601689 EIF4G3O43432 1585 aaKnown RBP33.55■■■□□ 2.96
UPF1-212ENST00000601689 WDR97A6NE52 1622 aa33.51■■■□□ 2.96
UPF1-212ENST00000601689 AQRO60306 1485 aaKnown RBP eCLIP33.5■■■□□ 2.954e-7■■■■□ 19.7
UPF1-212ENST00000601689 TOP2BQ02880 1626 aa33.49■■■□□ 2.95
UPF1-212ENST00000601689 BIVM-ERCC5R4GMW8 1640 aa33.47■■■□□ 2.95
UPF1-212ENST00000601689 TDRD9Q8NDG6 1382 aaKnown RBP33.45■■■□□ 2.94
UPF1-212ENST00000601689 OSCARQ8IYS5 282 aa33.43■■■□□ 2.94
UPF1-212ENST00000601689 SYNJ1O43426 1573 aa33.4■■■□□ 2.94
UPF1-212ENST00000601689 ABCA10Q8WWZ4 1543 aa33.36■■■□□ 2.93
UPF1-212ENST00000601689 GRIN2BQ13224 1484 aa33.29■■■□□ 2.92
UPF1-212ENST00000601689 GAPVD1Q14C86 1478 aa33.29■■■□□ 2.92
UPF1-212ENST00000601689 FBLN2P98095 1184 aa33.27■■■□□ 2.92
UPF1-212ENST00000601689 MAGI1Q96QZ7 1491 aaPredicted RBP33.22■■■□□ 2.91
UPF1-212ENST00000601689 PBRM1Q86U86 1689 aa33.2■■■□□ 2.91
UPF1-212ENST00000601689 SNAPC4Q5SXM2 1469 aa33.2■■■□□ 2.91
UPF1-212ENST00000601689 ABCA5Q8WWZ7 1642 aa33.18■■■□□ 2.9
UPF1-212ENST00000601689 CHD1O14646 1710 aa33.17■■■□□ 2.9
UPF1-212ENST00000601689 CHMP7Q8WUX9 453 aaPredicted RBP33.17■■■□□ 2.9
UPF1-212ENST00000601689 SYNJ2O15056 1496 aa33.07■■■□□ 2.88
UPF1-212ENST00000601689 ERICH3Q5RHP9 1530 aa32.99■■■□□ 2.87
UPF1-212ENST00000601689 KIF27Q86VH2 1401 aa32.95■■■□□ 2.87
UPF1-212ENST00000601689 FHAD1B1AJZ9 1412 aa32.91■■■□□ 2.86
UPF1-212ENST00000601689 ADAMTS12P58397 1594 aa32.89■■■□□ 2.86
UPF1-212ENST00000601689 TRIM41Q8WV44 630 aa32.88■■■□□ 2.85
UPF1-212ENST00000601689 GRIN2AQ12879 1464 aa32.82■■■□□ 2.84
UPF1-212ENST00000601689 RIMBP3CA6NJZ7 1639 aa32.76■■■□□ 2.83
UPF1-212ENST00000601689 RIMBP3BA6NNM3 1639 aa32.76■■■□□ 2.83
UPF1-212ENST00000601689 RIMBP3Q9UFD9 1639 aa32.76■■■□□ 2.83
UPF1-212ENST00000601689 ARHGEF11O15085 1522 aa32.75■■■□□ 2.83
UPF1-212ENST00000601689 CLASP1Q7Z460 1538 aa32.75■■■□□ 2.83
UPF1-212ENST00000601689 CUL7Q14999 1698 aa32.72■■■□□ 2.83
UPF1-212ENST00000601689 IGF1RP08069 1367 aa32.71■■■□□ 2.83
UPF1-212ENST00000601689 NUP160Q12769 1436 aa32.64■■■□□ 2.82
UPF1-212ENST00000601689 CEP170Q5SW79 1584 aa32.61■■■□□ 2.81
UPF1-212ENST00000601689 CARMIL1Q5VZK9 1371 aa32.59■■■□□ 2.81
UPF1-212ENST00000601689 CYB5RLQ6IPT4 315 aa32.55■■■□□ 2.8
UPF1-212ENST00000601689 RUSC2Q8N2Y8 1516 aa32.45■■■□□ 2.78
UPF1-212ENST00000601689 ARAP1Q96P48 1450 aa32.44■■■□□ 2.78
UPF1-212ENST00000601689 JPH4Q96JJ6 628 aa32.43■■■□□ 2.78
UPF1-212ENST00000601689 RAPGEF2Q9Y4G8 1499 aa32.4■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms