RNA–Protein interactions for RNA: ENST00000600879.5

HIF3A-219, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-219ENST00000600879 NISCHQ9Y2I1 1504 aa25.41■■□□□ 1.66
HIF3A-219ENST00000600879 ABCC9O60706 1549 aa23.59■■□□□ 1.37
HIF3A-219ENST00000600879 CCDC180Q9P1Z9 1646 aa22.89■■□□□ 1.25
HIF3A-219ENST00000600879 DNAJC5BQ9UF47 199 aa22.6■■□□□ 1.21
HIF3A-219ENST00000600879 RB1CC1Q8TDY2 1594 aa22.07■■□□□ 1.12
HIF3A-219ENST00000600879 PABPN1Q86U42 306 aaKnown RBP eCLIP21.95■■□□□ 1.1
HIF3A-219ENST00000600879 DCAF8L2P0C7V8 631 aa21.85■■□□□ 1.09
HIF3A-219ENST00000600879 NACADO15069 1562 aa21.78■■□□□ 1.08
HIF3A-219ENST00000600879 UNC13AQ9UPW8 1703 aa21.6■■□□□ 1.05
HIF3A-219ENST00000600879 BICRAQ9NZM4 1560 aa21.53■■□□□ 1.04
HIF3A-219ENST00000600879 MYO15BQ96JP2 1530 aa21.24■□□□□ 0.99
HIF3A-219ENST00000600879 CECR2Q9BXF3 1484 aa21.23■□□□□ 0.99
HIF3A-219ENST00000600879 CC2D2AQ9P2K1 1620 aa21.19■□□□□ 0.98
HIF3A-219ENST00000600879 SCRIBQ14160 1630 aa21.03■□□□□ 0.96
HIF3A-219ENST00000600879 EIF4G1Q04637 1599 aaKnown RBP21.02■□□□□ 0.95
HIF3A-219ENST00000600879 SHROOM4Q9ULL8 1493 aa20.97■□□□□ 0.95
HIF3A-219ENST00000600879 DNAJC5Q9H3Z4 198 aa20.96■□□□□ 0.95
HIF3A-219ENST00000600879 ZCCHC6Q5VYS8 1495 aaKnown RBP20.95■□□□□ 0.94
HIF3A-219ENST00000600879 DCAF1Q9Y4B6 1507 aa20.85■□□□□ 0.93
HIF3A-219ENST00000600879 CUX2O14529 1486 aa20.34■□□□□ 0.85
HIF3A-219ENST00000600879 ERCC6Q03468 1493 aa20.34■□□□□ 0.85
HIF3A-219ENST00000600879 NESP48681 1621 aa20.14■□□□□ 0.81
HIF3A-219ENST00000600879 NCAPD3P42695 1498 aa20.14■□□□□ 0.81
HIF3A-219ENST00000600879 ATAD2BQ9ULI0 1458 aa20.07■□□□□ 0.8
HIF3A-219ENST00000600879 TRIM41Q8WV44 630 aa20■□□□□ 0.79
HIF3A-219ENST00000600879 HMGXB3Q12766 1538 aa19.92■□□□□ 0.78
HIF3A-219ENST00000600879 SMARCA2P51531 1590 aa19.91■□□□□ 0.78
HIF3A-219ENST00000600879 THOC2Q8NI27 1593 aaKnown RBP19.91■□□□□ 0.78
HIF3A-219ENST00000600879 SMARCA4P51532 1647 aa19.91■□□□□ 0.78
HIF3A-219ENST00000600879 BAZ1BQ9UIG0 1483 aaKnown RBP19.86■□□□□ 0.77
HIF3A-219ENST00000600879 KIF21AQ7Z4S6 1674 aa19.77■□□□□ 0.76
HIF3A-219ENST00000600879 LAMC3Q9Y6N6 1575 aa19.74■□□□□ 0.75
HIF3A-219ENST00000600879 BAZ1AQ9NRL2 1556 aaPredicted RBP19.71■□□□□ 0.75
HIF3A-219ENST00000600879 PDS5BQ9NTI5 1447 aa19.68■□□□□ 0.74
HIF3A-219ENST00000600879 MROH2BQ7Z745 1585 aa19.66■□□□□ 0.74
HIF3A-219ENST00000600879 PEG3Q9GZU2 1588 aa19.64■□□□□ 0.73
HIF3A-219ENST00000600879 MRC2Q9UBG0 1479 aa19.57■□□□□ 0.72
HIF3A-219ENST00000600879 CADPSQ9ULU8 1353 aa19.55■□□□□ 0.72
HIF3A-219ENST00000600879 WDR62O43379 1518 aa19.51■□□□□ 0.71
HIF3A-219ENST00000600879 OSCARQ8IYS5 282 aa19.41■□□□□ 0.7
HIF3A-219ENST00000600879 CEP164Q9UPV0 1460 aa19.4■□□□□ 0.7
HIF3A-219ENST00000600879 WIZO95785 1651 aa19.39■□□□□ 0.69
HIF3A-219ENST00000600879 FANCD2Q9BXW9 1451 aa19.36■□□□□ 0.69
HIF3A-219ENST00000600879 URB2Q14146 1524 aaKnown RBP19.26■□□□□ 0.67
HIF3A-219ENST00000600879 RIMBP3CA6NJZ7 1639 aa19.23■□□□□ 0.67
HIF3A-219ENST00000600879 RIMBP3BA6NNM3 1639 aa19.23■□□□□ 0.67
HIF3A-219ENST00000600879 RIMBP3Q9UFD9 1639 aa19.23■□□□□ 0.67
HIF3A-219ENST00000600879 CFTRP13569 1480 aa19.22■□□□□ 0.67
HIF3A-219ENST00000600879 ZNF608Q9ULD9 1512 aaPredicted RBP19.15■□□□□ 0.66
HIF3A-219ENST00000600879 ARHGEF11O15085 1522 aa19.12■□□□□ 0.65
HIF3A-219ENST00000600879 CYB5RLQ6IPT4 315 aa19.09■□□□□ 0.65
HIF3A-219ENST00000600879 TRHP20396 242 aaPredicted RBP19.05■□□□□ 0.64
HIF3A-219ENST00000600879 RSF1Q96T23 1441 aaPredicted RBP19.05■□□□□ 0.64
HIF3A-219ENST00000600879 TOP2AP11388 1531 aaKnown RBP19.04■□□□□ 0.64
HIF3A-219ENST00000600879 IFT140Q96RY7 1462 aa19■□□□□ 0.63
HIF3A-219ENST00000600879 TOPBP1Q92547 1522 aa18.94■□□□□ 0.62
HIF3A-219ENST00000600879 EIF4G3O43432 1585 aaKnown RBP18.93■□□□□ 0.62
HIF3A-219ENST00000600879 ARAP1Q96P48 1450 aa18.93■□□□□ 0.62
HIF3A-219ENST00000600879 FBLN2P98095 1184 aa18.93■□□□□ 0.62
HIF3A-219ENST00000600879 AQRO60306 1485 aaKnown RBP eCLIP18.9■□□□□ 0.62
HIF3A-219ENST00000600879 PRDM2Q13029 1718 aa18.89■□□□□ 0.61
HIF3A-219ENST00000600879 CCDC88BA6NC98 1476 aa18.89■□□□□ 0.61
HIF3A-219ENST00000600879 CHD1O14646 1710 aa18.88■□□□□ 0.61
HIF3A-219ENST00000600879 TARBP1Q13395 1621 aaKnown RBP18.78■□□□□ 0.6
HIF3A-219ENST00000600879 DNMBPQ6XZF7 1577 aa18.78■□□□□ 0.6
HIF3A-219ENST00000600879 AEBP2Q6ZN18 517 aaPredicted RBP18.78■□□□□ 0.6
HIF3A-219ENST00000600879 RAD54L2Q9Y4B4 1467 aa18.74■□□□□ 0.59
HIF3A-219ENST00000600879 ABCC8Q09428 1581 aa18.73■□□□□ 0.59
HIF3A-219ENST00000600879 TDRD9Q8NDG6 1382 aaKnown RBP18.73■□□□□ 0.59
HIF3A-219ENST00000600879 POLA1P09884 1462 aaPredicted RBP18.72■□□□□ 0.59
HIF3A-219ENST00000600879 SNAPC4Q5SXM2 1469 aa18.67■□□□□ 0.58
HIF3A-219ENST00000600879 SOGA1O94964 1423 aa18.64■□□□□ 0.57
HIF3A-219ENST00000600879 CLASP1Q7Z460 1538 aa18.63■□□□□ 0.57
HIF3A-219ENST00000600879 CHMP7Q8WUX9 453 aaPredicted RBP18.62■□□□□ 0.57
HIF3A-219ENST00000600879 FGD5Q6ZNL6 1462 aa18.56■□□□□ 0.56
HIF3A-219ENST00000600879 SYNJ1O43426 1573 aa18.55■□□□□ 0.56
HIF3A-219ENST00000600879 GAPVD1Q14C86 1478 aa18.5■□□□□ 0.55
HIF3A-219ENST00000600879 GRIN2BQ13224 1484 aa18.49■□□□□ 0.55
HIF3A-219ENST00000600879 MAGI1Q96QZ7 1491 aaPredicted RBP18.49■□□□□ 0.55
HIF3A-219ENST00000600879 CUX1P39880 1505 aa18.48■□□□□ 0.55
HIF3A-219ENST00000600879 SYNJ2O15056 1496 aa18.47■□□□□ 0.55
HIF3A-219ENST00000600879 ERCC6L2Q5T890 1561 aa18.43■□□□□ 0.54
HIF3A-219ENST00000600879 WDR97A6NE52 1622 aa18.4■□□□□ 0.54
HIF3A-219ENST00000600879 PBRM1Q86U86 1689 aa18.38■□□□□ 0.53
HIF3A-219ENST00000600879 ABCA5Q8WWZ7 1642 aa18.27■□□□□ 0.52
HIF3A-219ENST00000600879 GRIN2AQ12879 1464 aa18.26■□□□□ 0.51
HIF3A-219ENST00000600879 CEP170Q5SW79 1584 aa18.26■□□□□ 0.51
HIF3A-219ENST00000600879 ABCA10Q8WWZ4 1543 aa18.25■□□□□ 0.51
HIF3A-219ENST00000600879 NUP160Q12769 1436 aa18.2■□□□□ 0.5
HIF3A-219ENST00000600879 ADAMTS12P58397 1594 aa18.19■□□□□ 0.5
HIF3A-219ENST00000600879 KIF13AQ9H1H9 1805 aa18.18■□□□□ 0.5
HIF3A-219ENST00000600879 SHROOM2Q13796 1616 aa18.14■□□□□ 0.49
HIF3A-219ENST00000600879 FAM69CQ0P6D2 419 aa18.13■□□□□ 0.49
HIF3A-219ENST00000600879 PRG4Q92954 1404 aaPredicted RBP18.13■□□□□ 0.49
HIF3A-219ENST00000600879 FHAD1B1AJZ9 1412 aa18.1■□□□□ 0.49
HIF3A-219ENST00000600879 WRNQ14191 1432 aaPredicted RBP eCLIP18.1■□□□□ 0.49
HIF3A-219ENST00000600879 KDM4FA0A1W2PPD8 638 aa18.09■□□□□ 0.49
HIF3A-219ENST00000600879 JPH4Q96JJ6 628 aa18.06■□□□□ 0.48
HIF3A-219ENST00000600879 SUPT5HO00267 1087 aaKnown RBP18.05■□□□□ 0.48
HIF3A-219ENST00000600879 ILDR1Q86SU0 546 aaPredicted RBP18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms