RNA–Protein interactions for RNA: ENST00000600499.5

LTBP4-228, Transcript of latent transforming growth factor beta binding protein 4, humanhuman

TSL 2

Gene LTBP4, Length 580 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBP4-228ENST00000600499 NISCHQ9Y2I1 1504 aa35.32■■■■□ 3.24
LTBP4-228ENST00000600499 CCDC180Q9P1Z9 1646 aa31.32■■■□□ 2.6
LTBP4-228ENST00000600499 ABCC9O60706 1549 aa30.33■■■□□ 2.45
LTBP4-228ENST00000600499 ZCCHC6Q5VYS8 1495 aaKnown RBP29.47■■■□□ 2.31
LTBP4-228ENST00000600499 NACADO15069 1562 aa29.41■■■□□ 2.3
LTBP4-228ENST00000600499 MYO15BQ96JP2 1530 aa29.4■■■□□ 2.3
LTBP4-228ENST00000600499 RB1CC1Q8TDY2 1594 aa29.35■■■□□ 2.29
LTBP4-228ENST00000600499 DCAF1Q9Y4B6 1507 aa29.32■■■□□ 2.28
LTBP4-228ENST00000600499 DCAF8L2P0C7V8 631 aa29.21■■■□□ 2.27
LTBP4-228ENST00000600499 UNC13AQ9UPW8 1703 aa28.66■■■□□ 2.18
LTBP4-228ENST00000600499 BICRAQ9NZM4 1560 aa28.49■■■□□ 2.15
LTBP4-228ENST00000600499 SCRIBQ14160 1630 aa28.47■■■□□ 2.15
LTBP4-228ENST00000600499 PABPN1Q86U42 306 aaKnown RBP eCLIP28.36■■■□□ 2.13
LTBP4-228ENST00000600499 SHROOM4Q9ULL8 1493 aa28.28■■■□□ 2.12
LTBP4-228ENST00000600499 DNAJC5BQ9UF47 199 aa27.72■■■□□ 2.03
LTBP4-228ENST00000600499 EIF4G1Q04637 1599 aaKnown RBP27.68■■■□□ 2.02
LTBP4-228ENST00000600499 CC2D2AQ9P2K1 1620 aa27.49■■□□□ 1.99
LTBP4-228ENST00000600499 CECR2Q9BXF3 1484 aa27.45■■□□□ 1.99
LTBP4-228ENST00000600499 BAZ1AQ9NRL2 1556 aaPredicted RBP27.35■■□□□ 1.97
LTBP4-228ENST00000600499 SMARCA4P51532 1647 aa27.33■■□□□ 1.97
LTBP4-228ENST00000600499 MROH2BQ7Z745 1585 aa27.18■■□□□ 1.94
LTBP4-228ENST00000600499 NCAPD3P42695 1498 aa27.16■■□□□ 1.94
LTBP4-228ENST00000600499 ATAD2BQ9ULI0 1458 aa27.16■■□□□ 1.94
LTBP4-228ENST00000600499 PEG3Q9GZU2 1588 aa27.16■■□□□ 1.94
LTBP4-228ENST00000600499 SMARCA2P51531 1590 aa27.13■■□□□ 1.93
LTBP4-228ENST00000600499 HMGXB3Q12766 1538 aa27.02■■□□□ 1.92
LTBP4-228ENST00000600499 RSF1Q96T23 1441 aaPredicted RBP26.98■■□□□ 1.91
LTBP4-228ENST00000600499 BAZ1BQ9UIG0 1483 aaKnown RBP26.89■■□□□ 1.9
LTBP4-228ENST00000600499 WIZO95785 1651 aa26.87■■□□□ 1.89
LTBP4-228ENST00000600499 TOP2AP11388 1531 aaKnown RBP26.65■■□□□ 1.86
LTBP4-228ENST00000600499 LAMC3Q9Y6N6 1575 aa26.37■■□□□ 1.81
LTBP4-228ENST00000600499 CADPSQ9ULU8 1353 aa26.33■■□□□ 1.81
LTBP4-228ENST00000600499 CCDC88BA6NC98 1476 aa26.33■■□□□ 1.81
LTBP4-228ENST00000600499 NESP48681 1621 aa26.32■■□□□ 1.8
LTBP4-228ENST00000600499 SUPT5HO00267 1087 aaKnown RBP26.28■■□□□ 1.8
LTBP4-228ENST00000600499 CFTRP13569 1480 aa26.24■■□□□ 1.79
LTBP4-228ENST00000600499 PDS5BQ9NTI5 1447 aa26.16■■□□□ 1.78
LTBP4-228ENST00000600499 ERCC6Q03468 1493 aa26.11■■□□□ 1.77
LTBP4-228ENST00000600499 KIF21AQ7Z4S6 1674 aa26.03■■□□□ 1.76
LTBP4-228ENST00000600499 PRDM2Q13029 1718 aa26.02■■□□□ 1.76
LTBP4-228ENST00000600499 FANCD2Q9BXW9 1451 aa25.99■■□□□ 1.75
LTBP4-228ENST00000600499 THOC2Q8NI27 1593 aaKnown RBP25.94■■□□□ 1.74
LTBP4-228ENST00000600499 CEP164Q9UPV0 1460 aa25.92■■□□□ 1.74
LTBP4-228ENST00000600499 CUX2O14529 1486 aa25.88■■□□□ 1.73
LTBP4-228ENST00000600499 MRC2Q9UBG0 1479 aa25.87■■□□□ 1.73
LTBP4-228ENST00000600499 WDR62O43379 1518 aa25.81■■□□□ 1.72
LTBP4-228ENST00000600499 URB2Q14146 1524 aaKnown RBP25.73■■□□□ 1.71
LTBP4-228ENST00000600499 ABCC8Q09428 1581 aa25.67■■□□□ 1.7
LTBP4-228ENST00000600499 TOPBP1Q92547 1522 aa25.61■■□□□ 1.69
LTBP4-228ENST00000600499 DNMBPQ6XZF7 1577 aa25.61■■□□□ 1.69
LTBP4-228ENST00000600499 CUX1P39880 1505 aa25.49■■□□□ 1.67
LTBP4-228ENST00000600499 POLA1P09884 1462 aaPredicted RBP25.41■■□□□ 1.66
LTBP4-228ENST00000600499 IFT140Q96RY7 1462 aa25.41■■□□□ 1.66
LTBP4-228ENST00000600499 WRNQ14191 1432 aaPredicted RBP eCLIP25.4■■□□□ 1.66
LTBP4-228ENST00000600499 FGD5Q6ZNL6 1462 aa25.35■■□□□ 1.65
LTBP4-228ENST00000600499 TOP2BQ02880 1626 aa25.35■■□□□ 1.65
LTBP4-228ENST00000600499 TARBP1Q13395 1621 aaKnown RBP25.34■■□□□ 1.65
LTBP4-228ENST00000600499 BIVM-ERCC5R4GMW8 1640 aa25.34■■□□□ 1.65
LTBP4-228ENST00000600499 SYNJ1O43426 1573 aa25.31■■□□□ 1.64
LTBP4-228ENST00000600499 SOGA1O94964 1423 aa25.29■■□□□ 1.64
LTBP4-228ENST00000600499 RAD54L2Q9Y4B4 1467 aa25.26■■□□□ 1.63
LTBP4-228ENST00000600499 ZNF608Q9ULD9 1512 aaPredicted RBP25.24■■□□□ 1.63
LTBP4-228ENST00000600499 WDR97A6NE52 1622 aa25.2■■□□□ 1.62
LTBP4-228ENST00000600499 ABCA10Q8WWZ4 1543 aa25.18■■□□□ 1.62
LTBP4-228ENST00000600499 EIF4G3O43432 1585 aaKnown RBP25.14■■□□□ 1.62
LTBP4-228ENST00000600499 AQRO60306 1485 aaKnown RBP eCLIP25.12■■□□□ 1.612e-9■■□□□ 14.4
LTBP4-228ENST00000600499 TDRD9Q8NDG6 1382 aaKnown RBP25.09■■□□□ 1.61
LTBP4-228ENST00000600499 ABCA5Q8WWZ7 1642 aa25.04■■□□□ 1.6
LTBP4-228ENST00000600499 GAPVD1Q14C86 1478 aa25.01■■□□□ 1.59
LTBP4-228ENST00000600499 GRIN2BQ13224 1484 aa24.99■■□□□ 1.59
LTBP4-228ENST00000600499 MAGI1Q96QZ7 1491 aaPredicted RBP24.92■■□□□ 1.58
LTBP4-228ENST00000600499 PBRM1Q86U86 1689 aa24.91■■□□□ 1.58
LTBP4-228ENST00000600499 SNAPC4Q5SXM2 1469 aa24.89■■□□□ 1.57
LTBP4-228ENST00000600499 ERICH3Q5RHP9 1530 aa24.88■■□□□ 1.57
LTBP4-228ENST00000600499 TRIM41Q8WV44 630 aa24.87■■□□□ 1.57
LTBP4-228ENST00000600499 KIF27Q86VH2 1401 aa24.86■■□□□ 1.57
LTBP4-228ENST00000600499 DNAJC5Q9H3Z4 198 aa24.84■■□□□ 1.57
LTBP4-228ENST00000600499 SYNJ2O15056 1496 aa24.81■■□□□ 1.56
LTBP4-228ENST00000600499 OSCARQ8IYS5 282 aa24.8■■□□□ 1.56
LTBP4-228ENST00000600499 CHD1O14646 1710 aa24.77■■□□□ 1.56
LTBP4-228ENST00000600499 IGF1RP08069 1367 aa24.77■■□□□ 1.56
LTBP4-228ENST00000600499 CHIC1Q5VXU3 224 aa24.76■■□□□ 1.55
LTBP4-228ENST00000600499 FHAD1B1AJZ9 1412 aa24.76■■□□□ 1.55
LTBP4-228ENST00000600499 ADAMTS12P58397 1594 aa24.76■■□□□ 1.55
LTBP4-228ENST00000600499 CHMP7Q8WUX9 453 aaPredicted RBP24.72■■□□□ 1.55
LTBP4-228ENST00000600499 FBLN2P98095 1184 aa24.68■■□□□ 1.54
LTBP4-228ENST00000600499 GRIN2AQ12879 1464 aa24.66■■□□□ 1.54
LTBP4-228ENST00000600499 RUSC2Q8N2Y8 1516 aa24.66■■□□□ 1.54
LTBP4-228ENST00000600499 CUL7Q14999 1698 aa24.66■■□□□ 1.54
LTBP4-228ENST00000600499 NUP160Q12769 1436 aa24.6■■□□□ 1.53
LTBP4-228ENST00000600499 CARMIL1Q5VZK9 1371 aa24.59■■□□□ 1.53
LTBP4-228ENST00000600499 CLASP1Q7Z460 1538 aa24.59■■□□□ 1.53
LTBP4-228ENST00000600499 EEA1Q15075 1411 aa24.56■■□□□ 1.52
LTBP4-228ENST00000600499 CEP170Q5SW79 1584 aa24.52■■□□□ 1.52
LTBP4-228ENST00000600499 PRXQ9BXM0 1461 aa24.48■■□□□ 1.51
LTBP4-228ENST00000600499 RAPGEF2Q9Y4G8 1499 aa24.47■■□□□ 1.51
LTBP4-228ENST00000600499 CSRNP3Q8WYN3 585 aa24.45■■□□□ 1.5
LTBP4-228ENST00000600499 ARHGEF11O15085 1522 aa24.4■■□□□ 1.5
LTBP4-228ENST00000600499 KIAA0586Q9BVV6 1533 aa24.4■■□□□ 1.5
LTBP4-228ENST00000600499 SHROOM2Q13796 1616 aa24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms