RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 NISCHQ9Y2I1 1504 aa34.67■■■■□ 3.14
VRK3-218ENST00000600031 CCDC180Q9P1Z9 1646 aa30.27■■■□□ 2.44
VRK3-218ENST00000600031 ZCCHC6Q5VYS8 1495 aaKnown RBP29.09■■■□□ 2.25
VRK3-218ENST00000600031 ABCC9O60706 1549 aa28.83■■■□□ 2.21
VRK3-218ENST00000600031 DCAF8L2P0C7V8 631 aa28.73■■■□□ 2.19
VRK3-218ENST00000600031 DCAF1Q9Y4B6 1507 aa28.63■■■□□ 2.17
VRK3-218ENST00000600031 MYO15BQ96JP2 1530 aa28.35■■■□□ 2.13
VRK3-218ENST00000600031 NACADO15069 1562 aa28.24■■■□□ 2.11
VRK3-218ENST00000600031 SHROOM4Q9ULL8 1493 aa28.22■■■□□ 2.11
VRK3-218ENST00000600031 RB1CC1Q8TDY2 1594 aa28.04■■■□□ 2.08
VRK3-218ENST00000600031 SCRIBQ14160 1630 aa27.86■■■□□ 2.05
VRK3-218ENST00000600031 UNC13AQ9UPW8 1703 aa27.5■■□□□ 1.99
VRK3-218ENST00000600031 BICRAQ9NZM4 1560 aa27.24■■□□□ 1.95
VRK3-218ENST00000600031 PABPN1Q86U42 306 aaKnown RBP eCLIP27.19■■□□□ 1.94
VRK3-218ENST00000600031 SUPT5HO00267 1087 aaKnown RBP27.07■■□□□ 1.92
VRK3-218ENST00000600031 CECR2Q9BXF3 1484 aa26.99■■□□□ 1.91
VRK3-218ENST00000600031 RSF1Q96T23 1441 aaPredicted RBP26.85■■□□□ 1.89
VRK3-218ENST00000600031 MROH2BQ7Z745 1585 aa26.8■■□□□ 1.88
VRK3-218ENST00000600031 BAZ1AQ9NRL2 1556 aaPredicted RBP26.76■■□□□ 1.87
VRK3-218ENST00000600031 SMARCA4P51532 1647 aa26.68■■□□□ 1.86
VRK3-218ENST00000600031 WIZO95785 1651 aa26.58■■□□□ 1.84
VRK3-218ENST00000600031 EIF4G1Q04637 1599 aaKnown RBP26.41■■□□□ 1.82
VRK3-218ENST00000600031 PEG3Q9GZU2 1588 aa26.35■■□□□ 1.81
VRK3-218ENST00000600031 ATAD2BQ9ULI0 1458 aa26.3■■□□□ 1.8
VRK3-218ENST00000600031 TOP2AP11388 1531 aaKnown RBP26.26■■□□□ 1.79
VRK3-218ENST00000600031 SMARCA2P51531 1590 aa26.24■■□□□ 1.79
VRK3-218ENST00000600031 BAZ1BQ9UIG0 1483 aaKnown RBP26.12■■□□□ 1.77
VRK3-218ENST00000600031 NCAPD3P42695 1498 aa26.09■■□□□ 1.77
VRK3-218ENST00000600031 CC2D2AQ9P2K1 1620 aa26.07■■□□□ 1.76
VRK3-218ENST00000600031 CCDC88BA6NC98 1476 aa26.02■■□□□ 1.76
VRK3-218ENST00000600031 HMGXB3Q12766 1538 aa26.02■■□□□ 1.76
VRK3-218ENST00000600031 CHIC1Q5VXU3 224 aa25.82■■□□□ 1.72
VRK3-218ENST00000600031 DNAJC5BQ9UF47 199 aa25.63■■□□□ 1.69
VRK3-218ENST00000600031 CFTRP13569 1480 aa25.47■■□□□ 1.67
VRK3-218ENST00000600031 TRIM41Q8WV44 630 aa25.43■■□□□ 1.66
VRK3-218ENST00000600031 ABCC8Q09428 1581 aa25.43■■□□□ 1.66
VRK3-218ENST00000600031 CADPSQ9ULU8 1353 aa25.42■■□□□ 1.66
VRK3-218ENST00000600031 PRDM2Q13029 1718 aa25.29■■□□□ 1.64
VRK3-218ENST00000600031 NESP48681 1621 aa25.28■■□□□ 1.64
VRK3-218ENST00000600031 WRNQ14191 1432 aaPredicted RBP eCLIP25.26■■□□□ 1.63
VRK3-218ENST00000600031 LAMC3Q9Y6N6 1575 aa25.21■■□□□ 1.63
VRK3-218ENST00000600031 SYNJ1O43426 1573 aa25.17■■□□□ 1.62
VRK3-218ENST00000600031 FANCD2Q9BXW9 1451 aa25.13■■□□□ 1.61
VRK3-218ENST00000600031 TOP2BQ02880 1626 aa25.07■■□□□ 1.6
VRK3-218ENST00000600031 CUX1P39880 1505 aa25.07■■□□□ 1.6
VRK3-218ENST00000600031 BIVM-ERCC5R4GMW8 1640 aa25.04■■□□□ 1.6
VRK3-218ENST00000600031 PDS5BQ9NTI5 1447 aa25.03■■□□□ 1.6
VRK3-218ENST00000600031 FAM9AQ8IZU1 332 aaPredicted RBP25■■□□□ 1.59
VRK3-218ENST00000600031 CEP164Q9UPV0 1460 aa24.98■■□□□ 1.59
VRK3-218ENST00000600031 KIF21AQ7Z4S6 1674 aa24.94■■□□□ 1.58
VRK3-218ENST00000600031 SOGA1O94964 1423 aa24.93■■□□□ 1.58
VRK3-218ENST00000600031 RUSC2Q8N2Y8 1516 aa24.86■■□□□ 1.57
VRK3-218ENST00000600031 DNMBPQ6XZF7 1577 aa24.86■■□□□ 1.57
VRK3-218ENST00000600031 LOC105371045A0A1W2PR82 267 aa24.86■■□□□ 1.57
VRK3-218ENST00000600031 TOPBP1Q92547 1522 aa24.85■■□□□ 1.57
VRK3-218ENST00000600031 URB2Q14146 1524 aaKnown RBP24.84■■□□□ 1.57
VRK3-218ENST00000600031 FGD5Q6ZNL6 1462 aa24.81■■□□□ 1.56
VRK3-218ENST00000600031 EEA1Q15075 1411 aa24.78■■□□□ 1.56
VRK3-218ENST00000600031 POLA1P09884 1462 aaPredicted RBP24.72■■□□□ 1.55
VRK3-218ENST00000600031 MRC2Q9UBG0 1479 aa24.72■■□□□ 1.55
VRK3-218ENST00000600031 CSRNP3Q8WYN3 585 aa24.71■■□□□ 1.55
VRK3-218ENST00000600031 ERCC6Q03468 1493 aa24.71■■□□□ 1.55
VRK3-218ENST00000600031 EHMT2Q96KQ7 1210 aa24.68■■□□□ 1.54
VRK3-218ENST00000600031 RAD54L2Q9Y4B4 1467 aa24.66■■□□□ 1.54
VRK3-218ENST00000600031 KIF27Q86VH2 1401 aa24.63■■□□□ 1.53
VRK3-218ENST00000600031 CUX2O14529 1486 aa24.62■■□□□ 1.53
VRK3-218ENST00000600031 WDR62O43379 1518 aa24.6■■□□□ 1.53
VRK3-218ENST00000600031 ABCA10Q8WWZ4 1543 aa24.57■■□□□ 1.52
VRK3-218ENST00000600031 THOC2Q8NI27 1593 aaKnown RBP24.56■■□□□ 1.52
VRK3-218ENST00000600031 WDR97A6NE52 1622 aa24.5■■□□□ 1.51
VRK3-218ENST00000600031 TARBP1Q13395 1621 aaKnown RBP24.48■■□□□ 1.51
VRK3-218ENST00000600031 KIF21BO75037 1637 aa24.48■■□□□ 1.51
VRK3-218ENST00000600031 IGF1RP08069 1367 aa24.46■■□□□ 1.51
VRK3-218ENST00000600031 GOLGA3Q08378 1498 aa24.45■■□□□ 1.5
VRK3-218ENST00000600031 PRXQ9BXM0 1461 aa24.44■■□□□ 1.5
VRK3-218ENST00000600031 TDRD9Q8NDG6 1382 aaKnown RBP24.43■■□□□ 1.5
VRK3-218ENST00000600031 RAPGEF2Q9Y4G8 1499 aa24.42■■□□□ 1.5
VRK3-218ENST00000600031 UBTFP17480 764 aaKnown RBP24.39■■□□□ 1.49
VRK3-218ENST00000600031 IFT140Q96RY7 1462 aa24.39■■□□□ 1.49
VRK3-218ENST00000600031 ABCA5Q8WWZ7 1642 aa24.39■■□□□ 1.49
VRK3-218ENST00000600031 GAPVD1Q14C86 1478 aa24.36■■□□□ 1.49
VRK3-218ENST00000600031 TNIKQ9UKE5 1360 aa24.35■■□□□ 1.49
VRK3-218ENST00000600031 ERICH3Q5RHP9 1530 aa24.34■■□□□ 1.49
VRK3-218ENST00000600031 CARMIL1Q5VZK9 1371 aa24.32■■□□□ 1.48
VRK3-218ENST00000600031 ZNF608Q9ULD9 1512 aaPredicted RBP24.3■■□□□ 1.48
VRK3-218ENST00000600031 AQRO60306 1485 aaKnown RBP eCLIP24.3■■□□□ 1.48
VRK3-218ENST00000600031 CUL7Q14999 1698 aa24.23■■□□□ 1.47
VRK3-218ENST00000600031 CEP162Q5TB80 1403 aa24.22■■□□□ 1.47
VRK3-218ENST00000600031 PBRM1Q86U86 1689 aa24.22■■□□□ 1.47
VRK3-218ENST00000600031 EIF4G3O43432 1585 aaKnown RBP24.18■■□□□ 1.46
VRK3-218ENST00000600031 GRIN2BQ13224 1484 aa24.18■■□□□ 1.46
VRK3-218ENST00000600031 FHAD1B1AJZ9 1412 aa24.08■■□□□ 1.45
VRK3-218ENST00000600031 ADAMTS12P58397 1594 aa24.08■■□□□ 1.44
VRK3-218ENST00000600031 RANGAP1P46060 587 aaPredicted RBP24.07■■□□□ 1.44
VRK3-218ENST00000600031 CLIP1P30622 1438 aa24.07■■□□□ 1.44
VRK3-218ENST00000600031 SNAPC4Q5SXM2 1469 aa24.05■■□□□ 1.44
VRK3-218ENST00000600031 MAGI1Q96QZ7 1491 aaPredicted RBP23.98■■□□□ 1.43
VRK3-218ENST00000600031 CTTNBP2Q8WZ74 1663 aa23.95■■□□□ 1.42
VRK3-218ENST00000600031 SYNJ2O15056 1496 aa23.9■■□□□ 1.42
VRK3-218ENST00000600031 GRIN2AQ12879 1464 aa23.89■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms