RNA–Protein interactions for RNA: ENST00000600026.5

LTBP4-227, Transcript of latent transforming growth factor beta binding protein 4, humanhuman

TSL 3

Gene LTBP4, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBP4-227ENST00000600026 NISCHQ9Y2I1 1504 aa52.56■■■■■ 6.01
LTBP4-227ENST00000600026 CCDC180Q9P1Z9 1646 aa46.62■■■■■ 5.05
LTBP4-227ENST00000600026 ABCC9O60706 1549 aa45.1■■■■■ 4.81
LTBP4-227ENST00000600026 ZCCHC6Q5VYS8 1495 aaKnown RBP43.9■■■■■ 4.62
LTBP4-227ENST00000600026 NACADO15069 1562 aa43.64■■■■■ 4.58
LTBP4-227ENST00000600026 DCAF8L2P0C7V8 631 aa43.61■■■■■ 4.57
LTBP4-227ENST00000600026 RB1CC1Q8TDY2 1594 aa43.6■■■■■ 4.57
LTBP4-227ENST00000600026 MYO15BQ96JP2 1530 aa43.51■■■■■ 4.56
LTBP4-227ENST00000600026 DCAF1Q9Y4B6 1507 aa43.51■■■■■ 4.56
LTBP4-227ENST00000600026 DNAJC5BQ9UF47 199 aa42.79■■■■■ 4.44
LTBP4-227ENST00000600026 UNC13AQ9UPW8 1703 aa42.75■■■■■ 4.43
LTBP4-227ENST00000600026 SCRIBQ14160 1630 aa42.56■■■■■ 4.4
LTBP4-227ENST00000600026 BICRAQ9NZM4 1560 aa42.3■■■■■ 4.36
LTBP4-227ENST00000600026 PABPN1Q86U42 306 aaKnown RBP eCLIP42.15■■■■■ 4.34
LTBP4-227ENST00000600026 SHROOM4Q9ULL8 1493 aa41.84■■■■■ 4.29
LTBP4-227ENST00000600026 EIF4G1Q04637 1599 aaKnown RBP41.13■■■■■ 4.18
LTBP4-227ENST00000600026 CECR2Q9BXF3 1484 aa40.89■■■■■ 4.14
LTBP4-227ENST00000600026 CC2D2AQ9P2K1 1620 aa40.85■■■■■ 4.13
LTBP4-227ENST00000600026 SMARCA4P51532 1647 aa40.74■■■■■ 4.11
LTBP4-227ENST00000600026 BAZ1AQ9NRL2 1556 aaPredicted RBP40.72■■■■■ 4.11
LTBP4-227ENST00000600026 MROH2BQ7Z745 1585 aa40.52■■■■■ 4.08
LTBP4-227ENST00000600026 ATAD2BQ9ULI0 1458 aa40.33■■■■■ 4.05
LTBP4-227ENST00000600026 SMARCA2P51531 1590 aa40.33■■■■■ 4.05
LTBP4-227ENST00000600026 PEG3Q9GZU2 1588 aa40.31■■■■■ 4.04
LTBP4-227ENST00000600026 NCAPD3P42695 1498 aa40.22■■■■■ 4.03
LTBP4-227ENST00000600026 RSF1Q96T23 1441 aaPredicted RBP40.18■■■■■ 4.02
LTBP4-227ENST00000600026 WIZO95785 1651 aa40.16■■■■■ 4.02
LTBP4-227ENST00000600026 HMGXB3Q12766 1538 aa40.13■■■■■ 4.01
LTBP4-227ENST00000600026 BAZ1BQ9UIG0 1483 aaKnown RBP40.05■■■■■ 4
LTBP4-227ENST00000600026 TOP2AP11388 1531 aaKnown RBP39.74■■■■□ 3.95
LTBP4-227ENST00000600026 DNAJC5Q9H3Z4 198 aa39.65■■■■□ 3.94
LTBP4-227ENST00000600026 SUPT5HO00267 1087 aaKnown RBP39.44■■■■□ 3.9
LTBP4-227ENST00000600026 CCDC88BA6NC98 1476 aa39.22■■■■□ 3.87
LTBP4-227ENST00000600026 NESP48681 1621 aa39.17■■■■□ 3.86
LTBP4-227ENST00000600026 LAMC3Q9Y6N6 1575 aa39.16■■■■□ 3.86
LTBP4-227ENST00000600026 CADPSQ9ULU8 1353 aa39.06■■■■□ 3.84
LTBP4-227ENST00000600026 CFTRP13569 1480 aa38.95■■■■□ 3.83
LTBP4-227ENST00000600026 PRDM2Q13029 1718 aa38.87■■■■□ 3.81
LTBP4-227ENST00000600026 KIF21AQ7Z4S6 1674 aa38.82■■■■□ 3.81
LTBP4-227ENST00000600026 ERCC6Q03468 1493 aa38.82■■■■□ 3.81
LTBP4-227ENST00000600026 PDS5BQ9NTI5 1447 aa38.8■■■■□ 3.8
LTBP4-227ENST00000600026 FANCD2Q9BXW9 1451 aa38.66■■■■□ 3.78
LTBP4-227ENST00000600026 CEP164Q9UPV0 1460 aa38.58■■■■□ 3.77
LTBP4-227ENST00000600026 CUX2O14529 1486 aa38.57■■■■□ 3.76
LTBP4-227ENST00000600026 THOC2Q8NI27 1593 aaKnown RBP38.55■■■■□ 3.76
LTBP4-227ENST00000600026 MRC2Q9UBG0 1479 aa38.43■■■■□ 3.74
LTBP4-227ENST00000600026 WDR62O43379 1518 aa38.32■■■■□ 3.72
LTBP4-227ENST00000600026 URB2Q14146 1524 aaKnown RBP38.26■■■■□ 3.72
LTBP4-227ENST00000600026 DNMBPQ6XZF7 1577 aa38.14■■■■□ 3.7
LTBP4-227ENST00000600026 TOPBP1Q92547 1522 aa38.11■■■■□ 3.69
LTBP4-227ENST00000600026 ABCC8Q09428 1581 aa38.09■■■■□ 3.69
LTBP4-227ENST00000600026 CUX1P39880 1505 aa38■■■■□ 3.67
LTBP4-227ENST00000600026 WRNQ14191 1432 aaPredicted RBP eCLIP37.88■■■■□ 3.66
LTBP4-227ENST00000600026 SYNJ1O43426 1573 aa37.85■■■■□ 3.65
LTBP4-227ENST00000600026 BIVM-ERCC5R4GMW8 1640 aa37.84■■■■□ 3.65
LTBP4-227ENST00000600026 TOP2BQ02880 1626 aa37.81■■■■□ 3.64
LTBP4-227ENST00000600026 POLA1P09884 1462 aaPredicted RBP37.81■■■■□ 3.64
LTBP4-227ENST00000600026 FGD5Q6ZNL6 1462 aa37.79■■■■□ 3.64
LTBP4-227ENST00000600026 IFT140Q96RY7 1462 aa37.73■■■■□ 3.63
LTBP4-227ENST00000600026 TARBP1Q13395 1621 aaKnown RBP37.69■■■■□ 3.62
LTBP4-227ENST00000600026 TRIM41Q8WV44 630 aa37.66■■■■□ 3.62
LTBP4-227ENST00000600026 RAD54L2Q9Y4B4 1467 aa37.63■■■■□ 3.61
LTBP4-227ENST00000600026 SOGA1O94964 1423 aa37.61■■■■□ 3.61
LTBP4-227ENST00000600026 WDR97A6NE52 1622 aa37.56■■■■□ 3.6
LTBP4-227ENST00000600026 ZNF608Q9ULD9 1512 aaPredicted RBP37.54■■■■□ 3.6
LTBP4-227ENST00000600026 EIF4G3O43432 1585 aaKnown RBP37.49■■■■□ 3.59
LTBP4-227ENST00000600026 ABCA10Q8WWZ4 1543 aa37.44■■■■□ 3.58
LTBP4-227ENST00000600026 AQRO60306 1485 aaKnown RBP eCLIP37.35■■■■□ 3.574e-9■■■■■ 42.8
LTBP4-227ENST00000600026 TDRD9Q8NDG6 1382 aaKnown RBP37.34■■■■□ 3.57
LTBP4-227ENST00000600026 ABCA5Q8WWZ7 1642 aa37.31■■■■□ 3.56
LTBP4-227ENST00000600026 PBRM1Q86U86 1689 aa37.25■■■■□ 3.55
LTBP4-227ENST00000600026 GAPVD1Q14C86 1478 aa37.21■■■■□ 3.55
LTBP4-227ENST00000600026 GRIN2BQ13224 1484 aa37.14■■■■□ 3.54
LTBP4-227ENST00000600026 CHIC1Q5VXU3 224 aa37.08■■■■□ 3.53
LTBP4-227ENST00000600026 SNAPC4Q5SXM2 1469 aa37.07■■■■□ 3.53
LTBP4-227ENST00000600026 KIF27Q86VH2 1401 aa37.04■■■■□ 3.52
LTBP4-227ENST00000600026 MAGI1Q96QZ7 1491 aaPredicted RBP37.01■■■■□ 3.52
LTBP4-227ENST00000600026 ERICH3Q5RHP9 1530 aa37■■■■□ 3.51
LTBP4-227ENST00000600026 CHD1O14646 1710 aa36.97■■■■□ 3.51
LTBP4-227ENST00000600026 ADAMTS12P58397 1594 aa36.93■■■■□ 3.5
LTBP4-227ENST00000600026 RUSC2Q8N2Y8 1516 aa36.88■■■■□ 3.49
LTBP4-227ENST00000600026 SYNJ2O15056 1496 aa36.86■■■■□ 3.49
LTBP4-227ENST00000600026 OSCARQ8IYS5 282 aa36.83■■■■□ 3.49
LTBP4-227ENST00000600026 CUL7Q14999 1698 aa36.81■■■■□ 3.48
LTBP4-227ENST00000600026 IGF1RP08069 1367 aa36.79■■■■□ 3.48
LTBP4-227ENST00000600026 FHAD1B1AJZ9 1412 aa36.79■■■■□ 3.48
LTBP4-227ENST00000600026 FBLN2P98095 1184 aa36.76■■■■□ 3.48
LTBP4-227ENST00000600026 CHMP7Q8WUX9 453 aaPredicted RBP36.73■■■■□ 3.47
LTBP4-227ENST00000600026 GRIN2AQ12879 1464 aa36.69■■■■□ 3.46
LTBP4-227ENST00000600026 EEA1Q15075 1411 aa36.63■■■■□ 3.45
LTBP4-227ENST00000600026 CARMIL1Q5VZK9 1371 aa36.61■■■■□ 3.45
LTBP4-227ENST00000600026 CEP170Q5SW79 1584 aa36.53■■■■□ 3.44
LTBP4-227ENST00000600026 CLASP1Q7Z460 1538 aa36.51■■■■□ 3.44
LTBP4-227ENST00000600026 NUP160Q12769 1436 aa36.5■■■■□ 3.43
LTBP4-227ENST00000600026 RAPGEF2Q9Y4G8 1499 aa36.47■■■■□ 3.43
LTBP4-227ENST00000600026 PRXQ9BXM0 1461 aa36.46■■■■□ 3.43
LTBP4-227ENST00000600026 FAM9AQ8IZU1 332 aaPredicted RBP36.46■■■■□ 3.43
LTBP4-227ENST00000600026 CSRNP3Q8WYN3 585 aa36.46■■■■□ 3.43
LTBP4-227ENST00000600026 RIMBP3CA6NJZ7 1639 aa36.37■■■■□ 3.41
LTBP4-227ENST00000600026 RIMBP3BA6NNM3 1639 aa36.37■■■■□ 3.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms