RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 NISCHQ9Y2I1 1504 aa34.38■■■■□ 3.09
SHKBP1-217ENST00000598558 CCDC180Q9P1Z9 1646 aa30.34■■■□□ 2.45
SHKBP1-217ENST00000598558 ABCC9O60706 1549 aa29.79■■■□□ 2.36
SHKBP1-217ENST00000598558 DCAF8L2P0C7V8 631 aa28.77■■■□□ 2.2
SHKBP1-217ENST00000598558 ZCCHC6Q5VYS8 1495 aaKnown RBP28.65■■■□□ 2.18
SHKBP1-217ENST00000598558 NACADO15069 1562 aa28.57■■■□□ 2.16
SHKBP1-217ENST00000598558 RB1CC1Q8TDY2 1594 aa28.56■■■□□ 2.16
SHKBP1-217ENST00000598558 MYO15BQ96JP2 1530 aa28.44■■■□□ 2.14
SHKBP1-217ENST00000598558 DCAF1Q9Y4B6 1507 aa28.38■■■□□ 2.13
SHKBP1-217ENST00000598558 PABPN1Q86U42 306 aaKnown RBP eCLIP27.95■■■□□ 2.06
SHKBP1-217ENST00000598558 UNC13AQ9UPW8 1703 aa27.89■■■□□ 2.05
SHKBP1-217ENST00000598558 SCRIBQ14160 1630 aa27.82■■■□□ 2.04
SHKBP1-217ENST00000598558 BICRAQ9NZM4 1560 aa27.82■■■□□ 2.04
SHKBP1-217ENST00000598558 DNAJC5BQ9UF47 199 aa27.41■■□□□ 1.98
SHKBP1-217ENST00000598558 SHROOM4Q9ULL8 1493 aa27.36■■□□□ 1.97
SHKBP1-217ENST00000598558 EIF4G1Q04637 1599 aaKnown RBP27.01■■□□□ 1.92
SHKBP1-217ENST00000598558 CECR2Q9BXF3 1484 aa26.87■■□□□ 1.89
SHKBP1-217ENST00000598558 CC2D2AQ9P2K1 1620 aa26.87■■□□□ 1.89
SHKBP1-217ENST00000598558 SMARCA4P51532 1647 aa26.6■■□□□ 1.85
SHKBP1-217ENST00000598558 BAZ1AQ9NRL2 1556 aaPredicted RBP26.56■■□□□ 1.84
SHKBP1-217ENST00000598558 MROH2BQ7Z745 1585 aa26.55■■□□□ 1.84
SHKBP1-217ENST00000598558 ATAD2BQ9ULI0 1458 aa26.5■■□□□ 1.83
SHKBP1-217ENST00000598558 NCAPD3P42695 1498 aa26.46■■□□□ 1.83
SHKBP1-217ENST00000598558 SMARCA2P51531 1590 aa26.36■■□□□ 1.81
SHKBP1-217ENST00000598558 PEG3Q9GZU2 1588 aa26.33■■□□□ 1.8
SHKBP1-217ENST00000598558 RSF1Q96T23 1441 aaPredicted RBP26.31■■□□□ 1.8
SHKBP1-217ENST00000598558 HMGXB3Q12766 1538 aa26.24■■□□□ 1.79
SHKBP1-217ENST00000598558 BAZ1BQ9UIG0 1483 aaKnown RBP26.23■■□□□ 1.79
SHKBP1-217ENST00000598558 WIZO95785 1651 aa26.22■■□□□ 1.79
SHKBP1-217ENST00000598558 TOP2AP11388 1531 aaKnown RBP25.9■■□□□ 1.74
SHKBP1-217ENST00000598558 NESP48681 1621 aa25.85■■□□□ 1.73
SHKBP1-217ENST00000598558 SUPT5HO00267 1087 aaKnown RBP25.77■■□□□ 1.72
SHKBP1-217ENST00000598558 CADPSQ9ULU8 1353 aa25.7■■□□□ 1.71
SHKBP1-217ENST00000598558 CCDC88BA6NC98 1476 aa25.7■■□□□ 1.7
SHKBP1-217ENST00000598558 LAMC3Q9Y6N6 1575 aa25.63■■□□□ 1.69
SHKBP1-217ENST00000598558 ERCC6Q03468 1493 aa25.57■■□□□ 1.68
SHKBP1-217ENST00000598558 CFTRP13569 1480 aa25.56■■□□□ 1.68
SHKBP1-217ENST00000598558 PDS5BQ9NTI5 1447 aa25.5■■□□□ 1.67
SHKBP1-217ENST00000598558 KIF21AQ7Z4S6 1674 aa25.39■■□□□ 1.65
SHKBP1-217ENST00000598558 FANCD2Q9BXW9 1451 aa25.38■■□□□ 1.65
SHKBP1-217ENST00000598558 THOC2Q8NI27 1593 aaKnown RBP25.31■■□□□ 1.64
SHKBP1-217ENST00000598558 CEP164Q9UPV0 1460 aa25.29■■□□□ 1.64
SHKBP1-217ENST00000598558 MRC2Q9UBG0 1479 aa25.25■■□□□ 1.63
SHKBP1-217ENST00000598558 CUX2O14529 1486 aa25.24■■□□□ 1.63
SHKBP1-217ENST00000598558 URB2Q14146 1524 aaKnown RBP25.17■■□□□ 1.62
SHKBP1-217ENST00000598558 WDR62O43379 1518 aa25.15■■□□□ 1.62
SHKBP1-217ENST00000598558 PRDM2Q13029 1718 aa25.14■■□□□ 1.61
SHKBP1-217ENST00000598558 TOPBP1Q92547 1522 aa24.99■■□□□ 1.59
SHKBP1-217ENST00000598558 DNMBPQ6XZF7 1577 aa24.91■■□□□ 1.58
SHKBP1-217ENST00000598558 ABCC8Q09428 1581 aa24.9■■□□□ 1.58
SHKBP1-217ENST00000598558 CUX1P39880 1505 aa24.88■■□□□ 1.57
SHKBP1-217ENST00000598558 POLA1P09884 1462 aaPredicted RBP24.8■■□□□ 1.56
SHKBP1-217ENST00000598558 IFT140Q96RY7 1462 aa24.77■■□□□ 1.56
SHKBP1-217ENST00000598558 RAD54L2Q9Y4B4 1467 aa24.76■■□□□ 1.55
SHKBP1-217ENST00000598558 ZNF608Q9ULD9 1512 aaPredicted RBP24.76■■□□□ 1.55
SHKBP1-217ENST00000598558 FGD5Q6ZNL6 1462 aa24.75■■□□□ 1.55
SHKBP1-217ENST00000598558 WRNQ14191 1432 aaPredicted RBP eCLIP24.73■■□□□ 1.55
SHKBP1-217ENST00000598558 SOGA1O94964 1423 aa24.72■■□□□ 1.55
SHKBP1-217ENST00000598558 TARBP1Q13395 1621 aaKnown RBP24.69■■□□□ 1.54
SHKBP1-217ENST00000598558 SYNJ1O43426 1573 aa24.67■■□□□ 1.54
SHKBP1-217ENST00000598558 AQRO60306 1485 aaKnown RBP eCLIP24.63■■□□□ 1.53
SHKBP1-217ENST00000598558 TDRD9Q8NDG6 1382 aaKnown RBP24.62■■□□□ 1.53
SHKBP1-217ENST00000598558 TOP2BQ02880 1626 aa24.61■■□□□ 1.53
SHKBP1-217ENST00000598558 BIVM-ERCC5R4GMW8 1640 aa24.58■■□□□ 1.53
SHKBP1-217ENST00000598558 EIF4G3O43432 1585 aaKnown RBP24.53■■□□□ 1.52
SHKBP1-217ENST00000598558 ABCA10Q8WWZ4 1543 aa24.5■■□□□ 1.51
SHKBP1-217ENST00000598558 DNAJC5Q9H3Z4 198 aa24.48■■□□□ 1.51
SHKBP1-217ENST00000598558 WDR97A6NE52 1622 aa24.45■■□□□ 1.5
SHKBP1-217ENST00000598558 GAPVD1Q14C86 1478 aa24.39■■□□□ 1.5
SHKBP1-217ENST00000598558 GRIN2BQ13224 1484 aa24.37■■□□□ 1.49
SHKBP1-217ENST00000598558 ABCA5Q8WWZ7 1642 aa24.35■■□□□ 1.49
SHKBP1-217ENST00000598558 SNAPC4Q5SXM2 1469 aa24.34■■□□□ 1.49
SHKBP1-217ENST00000598558 OSCARQ8IYS5 282 aa24.31■■□□□ 1.48
SHKBP1-217ENST00000598558 FBLN2P98095 1184 aa24.29■■□□□ 1.48
SHKBP1-217ENST00000598558 TRIM41Q8WV44 630 aa24.27■■□□□ 1.48
SHKBP1-217ENST00000598558 MAGI1Q96QZ7 1491 aaPredicted RBP24.25■■□□□ 1.47
SHKBP1-217ENST00000598558 PBRM1Q86U86 1689 aa24.22■■□□□ 1.47
SHKBP1-217ENST00000598558 CHMP7Q8WUX9 453 aaPredicted RBP24.22■■□□□ 1.47
SHKBP1-217ENST00000598558 SYNJ2O15056 1496 aa24.19■■□□□ 1.46
SHKBP1-217ENST00000598558 IGF1RP08069 1367 aa24.18■■□□□ 1.46
SHKBP1-217ENST00000598558 KIF27Q86VH2 1401 aa24.18■■□□□ 1.46
SHKBP1-217ENST00000598558 ERICH3Q5RHP9 1530 aa24.16■■□□□ 1.46
SHKBP1-217ENST00000598558 CHD1O14646 1710 aa24.15■■□□□ 1.46
SHKBP1-217ENST00000598558 RUSC2Q8N2Y8 1516 aa24.15■■□□□ 1.46
SHKBP1-217ENST00000598558 CHIC1Q5VXU3 224 aa24.15■■□□□ 1.46
SHKBP1-217ENST00000598558 FHAD1B1AJZ9 1412 aa24.11■■□□□ 1.45
SHKBP1-217ENST00000598558 ADAMTS12P58397 1594 aa24.1■■□□□ 1.45
SHKBP1-217ENST00000598558 GRIN2AQ12879 1464 aa24.06■■□□□ 1.44
SHKBP1-217ENST00000598558 CARMIL1Q5VZK9 1371 aa24■■□□□ 1.43
SHKBP1-217ENST00000598558 CLASP1Q7Z460 1538 aa23.98■■□□□ 1.43
SHKBP1-217ENST00000598558 NUP160Q12769 1436 aa23.97■■□□□ 1.43
SHKBP1-217ENST00000598558 CEP170Q5SW79 1584 aa23.95■■□□□ 1.42
SHKBP1-217ENST00000598558 CUL7Q14999 1698 aa23.89■■□□□ 1.42
SHKBP1-217ENST00000598558 ARHGEF11O15085 1522 aa23.88■■□□□ 1.41
SHKBP1-217ENST00000598558 FAM9AQ8IZU1 332 aaPredicted RBP23.85■■□□□ 1.41
SHKBP1-217ENST00000598558 RIMBP3CA6NJZ7 1639 aa23.84■■□□□ 1.41
SHKBP1-217ENST00000598558 RIMBP3BA6NNM3 1639 aa23.84■■□□□ 1.41
SHKBP1-217ENST00000598558 RIMBP3Q9UFD9 1639 aa23.84■■□□□ 1.41
SHKBP1-217ENST00000598558 CSRNP3Q8WYN3 585 aa23.84■■□□□ 1.41
SHKBP1-217ENST00000598558 RAPGEF2Q9Y4G8 1499 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms