RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 NISCHQ9Y2I1 1504 aa37.04■■■■□ 3.52
LIG1-215ENST00000597901 CCDC180Q9P1Z9 1646 aa32.91■■■□□ 2.86
LIG1-215ENST00000597901 ABCC9O60706 1549 aa32.78■■■□□ 2.84
LIG1-215ENST00000597901 DCAF8L2P0C7V8 631 aa31.34■■■□□ 2.61
LIG1-215ENST00000597901 RB1CC1Q8TDY2 1594 aa31.26■■■□□ 2.6
LIG1-215ENST00000597901 NACADO15069 1562 aa31.16■■■□□ 2.58
LIG1-215ENST00000597901 MYO15BQ96JP2 1530 aa30.85■■■□□ 2.53
LIG1-215ENST00000597901 ZCCHC6Q5VYS8 1495 aaKnown RBP30.71■■■□□ 2.51
LIG1-215ENST00000597901 PABPN1Q86U42 306 aaKnown RBP eCLIP30.71■■■□□ 2.51
LIG1-215ENST00000597901 DNAJC5BQ9UF47 199 aa30.61■■■□□ 2.49
LIG1-215ENST00000597901 DCAF1Q9Y4B6 1507 aa30.57■■■□□ 2.49
LIG1-215ENST00000597901 UNC13AQ9UPW8 1703 aa30.41■■■□□ 2.46
LIG1-215ENST00000597901 BICRAQ9NZM4 1560 aa30.35■■■□□ 2.45
LIG1-215ENST00000597901 SCRIBQ14160 1630 aa30.09■■■□□ 2.41
LIG1-215ENST00000597901 SHROOM4Q9ULL8 1493 aa29.94■■■□□ 2.38
LIG1-215ENST00000597901 EIF4G1Q04637 1599 aaKnown RBP29.58■■■□□ 2.33
LIG1-215ENST00000597901 CC2D2AQ9P2K1 1620 aa29.55■■■□□ 2.32
LIG1-215ENST00000597901 CECR2Q9BXF3 1484 aa29.49■■■□□ 2.31
LIG1-215ENST00000597901 NCAPD3P42695 1498 aa28.85■■■□□ 2.21
LIG1-215ENST00000597901 ATAD2BQ9ULI0 1458 aa28.78■■■□□ 2.2
LIG1-215ENST00000597901 SMARCA4P51532 1647 aa28.73■■■□□ 2.19
LIG1-215ENST00000597901 BAZ1AQ9NRL2 1556 aaPredicted RBP28.68■■■□□ 2.18
LIG1-215ENST00000597901 SMARCA2P51531 1590 aa28.66■■■□□ 2.18
LIG1-215ENST00000597901 MROH2BQ7Z745 1585 aa28.55■■■□□ 2.16
LIG1-215ENST00000597901 HMGXB3Q12766 1538 aa28.53■■■□□ 2.16
LIG1-215ENST00000597901 BAZ1BQ9UIG0 1483 aaKnown RBP28.49■■■□□ 2.15
LIG1-215ENST00000597901 PEG3Q9GZU2 1588 aa28.46■■■□□ 2.15
LIG1-215ENST00000597901 ERCC6Q03468 1493 aa28.29■■■□□ 2.12
LIG1-215ENST00000597901 NESP48681 1621 aa28.25■■■□□ 2.11
LIG1-215ENST00000597901 WIZO95785 1651 aa28.16■■■□□ 2.1
LIG1-215ENST00000597901 CUX2O14529 1486 aa28.15■■■□□ 2.1
LIG1-215ENST00000597901 RSF1Q96T23 1441 aaPredicted RBP28.15■■■□□ 2.1
LIG1-215ENST00000597901 LAMC3Q9Y6N6 1575 aa28.03■■■□□ 2.08
LIG1-215ENST00000597901 CADPSQ9ULU8 1353 aa28.02■■■□□ 2.08
LIG1-215ENST00000597901 DNAJC5Q9H3Z4 198 aa28■■■□□ 2.07
LIG1-215ENST00000597901 PDS5BQ9NTI5 1447 aa27.97■■■□□ 2.07
LIG1-215ENST00000597901 TOP2AP11388 1531 aaKnown RBP27.82■■■□□ 2.04
LIG1-215ENST00000597901 THOC2Q8NI27 1593 aaKnown RBP27.76■■■□□ 2.03
LIG1-215ENST00000597901 KIF21AQ7Z4S6 1674 aa27.74■■■□□ 2.03
LIG1-215ENST00000597901 CFTRP13569 1480 aa27.72■■■□□ 2.03
LIG1-215ENST00000597901 MRC2Q9UBG0 1479 aa27.64■■■□□ 2.02
LIG1-215ENST00000597901 FANCD2Q9BXW9 1451 aa27.64■■■□□ 2.01
LIG1-215ENST00000597901 CCDC88BA6NC98 1476 aa27.62■■■□□ 2.01
LIG1-215ENST00000597901 CEP164Q9UPV0 1460 aa27.6■■■□□ 2.01
LIG1-215ENST00000597901 WDR62O43379 1518 aa27.51■■■□□ 2
LIG1-215ENST00000597901 URB2Q14146 1524 aaKnown RBP27.37■■□□□ 1.97
LIG1-215ENST00000597901 SUPT5HO00267 1087 aaKnown RBP27.27■■□□□ 1.96
LIG1-215ENST00000597901 PRDM2Q13029 1718 aa27.19■■□□□ 1.94
LIG1-215ENST00000597901 TOPBP1Q92547 1522 aa27.13■■□□□ 1.93
LIG1-215ENST00000597901 ABCC8Q09428 1581 aa27.13■■□□□ 1.93
LIG1-215ENST00000597901 IFT140Q96RY7 1462 aa27.07■■□□□ 1.92
LIG1-215ENST00000597901 OSCARQ8IYS5 282 aa27.03■■□□□ 1.92
LIG1-215ENST00000597901 DNMBPQ6XZF7 1577 aa27.01■■□□□ 1.91
LIG1-215ENST00000597901 ZNF608Q9ULD9 1512 aaPredicted RBP27■■□□□ 1.91
LIG1-215ENST00000597901 TRIM41Q8WV44 630 aa26.89■■□□□ 1.9
LIG1-215ENST00000597901 POLA1P09884 1462 aaPredicted RBP26.87■■□□□ 1.89
LIG1-215ENST00000597901 AQRO60306 1485 aaKnown RBP eCLIP26.86■■□□□ 1.892e-7■■■■■ 35.2
LIG1-215ENST00000597901 SOGA1O94964 1423 aa26.85■■□□□ 1.89
LIG1-215ENST00000597901 RAD54L2Q9Y4B4 1467 aa26.83■■□□□ 1.89
LIG1-215ENST00000597901 TARBP1Q13395 1621 aaKnown RBP26.81■■□□□ 1.88
LIG1-215ENST00000597901 TDRD9Q8NDG6 1382 aaKnown RBP26.78■■□□□ 1.88
LIG1-215ENST00000597901 CUX1P39880 1505 aa26.78■■□□□ 1.88
LIG1-215ENST00000597901 FGD5Q6ZNL6 1462 aa26.75■■□□□ 1.87
LIG1-215ENST00000597901 EIF4G3O43432 1585 aaKnown RBP26.73■■□□□ 1.87
LIG1-215ENST00000597901 FBLN2P98095 1184 aa26.69■■□□□ 1.86
LIG1-215ENST00000597901 CHMP7Q8WUX9 453 aaPredicted RBP26.54■■□□□ 1.84
LIG1-215ENST00000597901 WRNQ14191 1432 aaPredicted RBP eCLIP26.52■■□□□ 1.84
LIG1-215ENST00000597901 WDR97A6NE52 1622 aa26.51■■□□□ 1.83
LIG1-215ENST00000597901 GRIN2BQ13224 1484 aa26.51■■□□□ 1.83
LIG1-215ENST00000597901 SNAPC4Q5SXM2 1469 aa26.5■■□□□ 1.83
LIG1-215ENST00000597901 ABCA10Q8WWZ4 1543 aa26.48■■□□□ 1.83
LIG1-215ENST00000597901 GAPVD1Q14C86 1478 aa26.48■■□□□ 1.83
LIG1-215ENST00000597901 RIMBP3CA6NJZ7 1639 aa26.45■■□□□ 1.82
LIG1-215ENST00000597901 RIMBP3BA6NNM3 1639 aa26.45■■□□□ 1.82
LIG1-215ENST00000597901 RIMBP3Q9UFD9 1639 aa26.45■■□□□ 1.82
LIG1-215ENST00000597901 MAGI1Q96QZ7 1491 aaPredicted RBP26.44■■□□□ 1.82
LIG1-215ENST00000597901 CHD1O14646 1710 aa26.43■■□□□ 1.82
LIG1-215ENST00000597901 ARHGEF11O15085 1522 aa26.41■■□□□ 1.82
LIG1-215ENST00000597901 TOP2BQ02880 1626 aa26.39■■□□□ 1.82
LIG1-215ENST00000597901 CYB5RLQ6IPT4 315 aa26.38■■□□□ 1.81
LIG1-215ENST00000597901 SYNJ1O43426 1573 aa26.37■■□□□ 1.81
LIG1-215ENST00000597901 SYNJ2O15056 1496 aa26.37■■□□□ 1.81
LIG1-215ENST00000597901 BIVM-ERCC5R4GMW8 1640 aa26.35■■□□□ 1.81
LIG1-215ENST00000597901 ABCA5Q8WWZ7 1642 aa26.3■■□□□ 1.8
LIG1-215ENST00000597901 PBRM1Q86U86 1689 aa26.24■■□□□ 1.79
LIG1-215ENST00000597901 CLASP1Q7Z460 1538 aa26.23■■□□□ 1.79
LIG1-215ENST00000597901 ARAP1Q96P48 1450 aa26.18■■□□□ 1.78
LIG1-215ENST00000597901 FHAD1B1AJZ9 1412 aa26.16■■□□□ 1.78
LIG1-215ENST00000597901 GRIN2AQ12879 1464 aa26.15■■□□□ 1.78
LIG1-215ENST00000597901 ERICH3Q5RHP9 1530 aa26.13■■□□□ 1.77
LIG1-215ENST00000597901 ADAMTS12P58397 1594 aa26.08■■□□□ 1.77
LIG1-215ENST00000597901 NUP160Q12769 1436 aa26.06■■□□□ 1.76
LIG1-215ENST00000597901 TRHP20396 242 aaPredicted RBP26.03■■□□□ 1.76
LIG1-215ENST00000597901 IGF1RP08069 1367 aa26.03■■□□□ 1.76
LIG1-215ENST00000597901 KIF27Q86VH2 1401 aa26.01■■□□□ 1.75
LIG1-215ENST00000597901 CEP170Q5SW79 1584 aa25.99■■□□□ 1.75
LIG1-215ENST00000597901 JPH4Q96JJ6 628 aa25.96■■□□□ 1.75
LIG1-215ENST00000597901 ERCC6L2Q5T890 1561 aa25.88■■□□□ 1.73
LIG1-215ENST00000597901 CARMIL1Q5VZK9 1371 aa25.84■■□□□ 1.73
LIG1-215ENST00000597901 PRG4Q92954 1404 aaPredicted RBP25.84■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms