RNA–Protein interactions for RNA: ENST00000596172.1

ZNF558-204, Transcript of zinc finger protein 558, humanhuman

TSL 4

Gene ZNF558, Length 547 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-204ENST00000596172 NISCHQ9Y2I1 1504 aa44.22■■■■■ 4.67
ZNF558-204ENST00000596172 CCDC180Q9P1Z9 1646 aa39.22■■■■□ 3.87
ZNF558-204ENST00000596172 ABCC9O60706 1549 aa38.33■■■■□ 3.73
ZNF558-204ENST00000596172 NACADO15069 1562 aa36.93■■■■□ 3.5
ZNF558-204ENST00000596172 RB1CC1Q8TDY2 1594 aa36.92■■■■□ 3.5
ZNF558-204ENST00000596172 DCAF8L2P0C7V8 631 aa36.89■■■■□ 3.5
ZNF558-204ENST00000596172 ZCCHC6Q5VYS8 1495 aaKnown RBP36.83■■■■□ 3.49
ZNF558-204ENST00000596172 MYO15BQ96JP2 1530 aa36.8■■■■□ 3.48
ZNF558-204ENST00000596172 DCAF1Q9Y4B6 1507 aa36.64■■■■□ 3.46
ZNF558-204ENST00000596172 UNC13AQ9UPW8 1703 aa35.94■■■■□ 3.34
ZNF558-204ENST00000596172 PABPN1Q86U42 306 aaKnown RBP eCLIP35.86■■■■□ 3.33
ZNF558-204ENST00000596172 BICRAQ9NZM4 1560 aa35.79■■■■□ 3.32
ZNF558-204ENST00000596172 SCRIBQ14160 1630 aa35.74■■■■□ 3.31
ZNF558-204ENST00000596172 SHROOM4Q9ULL8 1493 aa35.52■■■■□ 3.28
ZNF558-204ENST00000596172 DNAJC5BQ9UF47 199 aa35.21■■■■□ 3.23
ZNF558-204ENST00000596172 EIF4G1Q04637 1599 aaKnown RBP34.84■■■■□ 3.17
ZNF558-204ENST00000596172 CC2D2AQ9P2K1 1620 aa34.66■■■■□ 3.14
ZNF558-204ENST00000596172 CECR2Q9BXF3 1484 aa34.47■■■■□ 3.11
ZNF558-204ENST00000596172 BAZ1AQ9NRL2 1556 aaPredicted RBP34.25■■■■□ 3.07
ZNF558-204ENST00000596172 SMARCA4P51532 1647 aa34.24■■■■□ 3.07
ZNF558-204ENST00000596172 NCAPD3P42695 1498 aa34.13■■■■□ 3.05
ZNF558-204ENST00000596172 ATAD2BQ9ULI0 1458 aa34.11■■■■□ 3.05
ZNF558-204ENST00000596172 SMARCA2P51531 1590 aa34.06■■■■□ 3.04
ZNF558-204ENST00000596172 MROH2BQ7Z745 1585 aa34.04■■■■□ 3.04
ZNF558-204ENST00000596172 PEG3Q9GZU2 1588 aa33.97■■■■□ 3.03
ZNF558-204ENST00000596172 HMGXB3Q12766 1538 aa33.9■■■■□ 3.02
ZNF558-204ENST00000596172 BAZ1BQ9UIG0 1483 aaKnown RBP33.8■■■■□ 3
ZNF558-204ENST00000596172 RSF1Q96T23 1441 aaPredicted RBP33.73■■■□□ 2.99
ZNF558-204ENST00000596172 WIZO95785 1651 aa33.61■■■□□ 2.97
ZNF558-204ENST00000596172 TOP2AP11388 1531 aaKnown RBP33.33■■■□□ 2.93
ZNF558-204ENST00000596172 NESP48681 1621 aa33.17■■■□□ 2.9
ZNF558-204ENST00000596172 LAMC3Q9Y6N6 1575 aa33.14■■■□□ 2.9
ZNF558-204ENST00000596172 CADPSQ9ULU8 1353 aa33.13■■■□□ 2.89
ZNF558-204ENST00000596172 ERCC6Q03468 1493 aa33.04■■■□□ 2.88
ZNF558-204ENST00000596172 PDS5BQ9NTI5 1447 aa32.97■■■□□ 2.87
ZNF558-204ENST00000596172 CCDC88BA6NC98 1476 aa32.97■■■□□ 2.87
ZNF558-204ENST00000596172 CFTRP13569 1480 aa32.93■■■□□ 2.86
ZNF558-204ENST00000596172 SUPT5HO00267 1087 aaKnown RBP32.86■■■□□ 2.85
ZNF558-204ENST00000596172 CUX2O14529 1486 aa32.73■■■□□ 2.83
ZNF558-204ENST00000596172 KIF21AQ7Z4S6 1674 aa32.71■■■□□ 2.83
ZNF558-204ENST00000596172 FANCD2Q9BXW9 1451 aa32.69■■■□□ 2.82
ZNF558-204ENST00000596172 THOC2Q8NI27 1593 aaKnown RBP32.64■■■□□ 2.82
ZNF558-204ENST00000596172 CEP164Q9UPV0 1460 aa32.63■■■□□ 2.81
ZNF558-204ENST00000596172 MRC2Q9UBG0 1479 aa32.58■■■□□ 2.81
ZNF558-204ENST00000596172 PRDM2Q13029 1718 aa32.51■■■□□ 2.79
ZNF558-204ENST00000596172 WDR62O43379 1518 aa32.46■■■□□ 2.79
ZNF558-204ENST00000596172 URB2Q14146 1524 aaKnown RBP32.35■■■□□ 2.77
ZNF558-204ENST00000596172 ABCC8Q09428 1581 aa32.24■■■□□ 2.75
ZNF558-204ENST00000596172 TOPBP1Q92547 1522 aa32.16■■■□□ 2.74
ZNF558-204ENST00000596172 DNMBPQ6XZF7 1577 aa32.11■■■□□ 2.73
ZNF558-204ENST00000596172 IFT140Q96RY7 1462 aa31.98■■■□□ 2.71
ZNF558-204ENST00000596172 CUX1P39880 1505 aa31.93■■■□□ 2.7
ZNF558-204ENST00000596172 POLA1P09884 1462 aaPredicted RBP31.9■■■□□ 2.7
ZNF558-204ENST00000596172 FGD5Q6ZNL6 1462 aa31.81■■■□□ 2.68
ZNF558-204ENST00000596172 SOGA1O94964 1423 aa31.81■■■□□ 2.68
ZNF558-204ENST00000596172 ZNF608Q9ULD9 1512 aaPredicted RBP31.79■■■□□ 2.68
ZNF558-204ENST00000596172 TARBP1Q13395 1621 aaKnown RBP31.78■■■□□ 2.68
ZNF558-204ENST00000596172 WRNQ14191 1432 aaPredicted RBP eCLIP31.78■■■□□ 2.68
ZNF558-204ENST00000596172 RAD54L2Q9Y4B4 1467 aa31.74■■■□□ 2.67
ZNF558-204ENST00000596172 DNAJC5Q9H3Z4 198 aa31.72■■■□□ 2.67
ZNF558-204ENST00000596172 TOP2BQ02880 1626 aa31.67■■■□□ 2.66
ZNF558-204ENST00000596172 AQRO60306 1485 aaKnown RBP eCLIP31.64■■■□□ 2.663e-8■□□□□ 11.2
ZNF558-204ENST00000596172 BIVM-ERCC5R4GMW8 1640 aa31.64■■■□□ 2.65
ZNF558-204ENST00000596172 SYNJ1O43426 1573 aa31.63■■■□□ 2.65
ZNF558-204ENST00000596172 EIF4G3O43432 1585 aaKnown RBP31.61■■■□□ 2.65
ZNF558-204ENST00000596172 TDRD9Q8NDG6 1382 aaKnown RBP31.6■■■□□ 2.65
ZNF558-204ENST00000596172 WDR97A6NE52 1622 aa31.59■■■□□ 2.65
ZNF558-204ENST00000596172 ABCA10Q8WWZ4 1543 aa31.55■■■□□ 2.64
ZNF558-204ENST00000596172 OSCARQ8IYS5 282 aa31.43■■■□□ 2.62
ZNF558-204ENST00000596172 GRIN2BQ13224 1484 aa31.42■■■□□ 2.62
ZNF558-204ENST00000596172 GAPVD1Q14C86 1478 aa31.42■■■□□ 2.62
ZNF558-204ENST00000596172 ABCA5Q8WWZ7 1642 aa31.35■■■□□ 2.61
ZNF558-204ENST00000596172 MAGI1Q96QZ7 1491 aaPredicted RBP31.33■■■□□ 2.61
ZNF558-204ENST00000596172 SNAPC4Q5SXM2 1469 aa31.32■■■□□ 2.6
ZNF558-204ENST00000596172 FBLN2P98095 1184 aa31.24■■■□□ 2.59
ZNF558-204ENST00000596172 PBRM1Q86U86 1689 aa31.22■■■□□ 2.59
ZNF558-204ENST00000596172 CHMP7Q8WUX9 453 aaPredicted RBP31.21■■■□□ 2.59
ZNF558-204ENST00000596172 SYNJ2O15056 1496 aa31.21■■■□□ 2.59
ZNF558-204ENST00000596172 ERICH3Q5RHP9 1530 aa31.17■■■□□ 2.58
ZNF558-204ENST00000596172 CHD1O14646 1710 aa31.15■■■□□ 2.58
ZNF558-204ENST00000596172 KIF27Q86VH2 1401 aa31.13■■■□□ 2.57
ZNF558-204ENST00000596172 TRIM41Q8WV44 630 aa31.09■■■□□ 2.57
ZNF558-204ENST00000596172 FHAD1B1AJZ9 1412 aa31.08■■■□□ 2.57
ZNF558-204ENST00000596172 ADAMTS12P58397 1594 aa31.05■■■□□ 2.56
ZNF558-204ENST00000596172 IGF1RP08069 1367 aa31.04■■■□□ 2.56
ZNF558-204ENST00000596172 GRIN2AQ12879 1464 aa30.99■■■□□ 2.55
ZNF558-204ENST00000596172 CLASP1Q7Z460 1538 aa30.93■■■□□ 2.54
ZNF558-204ENST00000596172 NUP160Q12769 1436 aa30.89■■■□□ 2.53
ZNF558-204ENST00000596172 CUL7Q14999 1698 aa30.84■■■□□ 2.53
ZNF558-204ENST00000596172 CARMIL1Q5VZK9 1371 aa30.83■■■□□ 2.53
ZNF558-204ENST00000596172 ARHGEF11O15085 1522 aa30.83■■■□□ 2.53
ZNF558-204ENST00000596172 RUSC2Q8N2Y8 1516 aa30.8■■■□□ 2.52
ZNF558-204ENST00000596172 CEP170Q5SW79 1584 aa30.79■■■□□ 2.52
ZNF558-204ENST00000596172 RIMBP3CA6NJZ7 1639 aa30.78■■■□□ 2.52
ZNF558-204ENST00000596172 RIMBP3BA6NNM3 1639 aa30.78■■■□□ 2.52
ZNF558-204ENST00000596172 RIMBP3Q9UFD9 1639 aa30.78■■■□□ 2.52
ZNF558-204ENST00000596172 CHIC1Q5VXU3 224 aa30.76■■■□□ 2.51
ZNF558-204ENST00000596172 RAPGEF2Q9Y4G8 1499 aa30.63■■■□□ 2.49
ZNF558-204ENST00000596172 KIAA0586Q9BVV6 1533 aa30.62■■■□□ 2.49
ZNF558-204ENST00000596172 JPH4Q96JJ6 628 aa30.61■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms