RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 NISCHQ9Y2I1 1504 aa41.68■■■■■ 4.26
SHKBP1-212ENST00000596163 CCDC180Q9P1Z9 1646 aa36.99■■■■□ 3.51
SHKBP1-212ENST00000596163 ABCC9O60706 1549 aa36.24■■■■□ 3.39
SHKBP1-212ENST00000596163 DCAF8L2P0C7V8 631 aa34.97■■■■□ 3.19
SHKBP1-212ENST00000596163 RB1CC1Q8TDY2 1594 aa34.88■■■■□ 3.17
SHKBP1-212ENST00000596163 NACADO15069 1562 aa34.85■■■■□ 3.17
SHKBP1-212ENST00000596163 ZCCHC6Q5VYS8 1495 aaKnown RBP34.69■■■■□ 3.14
SHKBP1-212ENST00000596163 MYO15BQ96JP2 1530 aa34.67■■■■□ 3.14
SHKBP1-212ENST00000596163 DCAF1Q9Y4B6 1507 aa34.5■■■■□ 3.11
SHKBP1-212ENST00000596163 PABPN1Q86U42 306 aaKnown RBP eCLIP33.92■■■■□ 3.02
SHKBP1-212ENST00000596163 UNC13AQ9UPW8 1703 aa33.87■■■■□ 3.01
SHKBP1-212ENST00000596163 SCRIBQ14160 1630 aa33.74■■■□□ 2.99
SHKBP1-212ENST00000596163 BICRAQ9NZM4 1560 aa33.72■■■□□ 2.99
SHKBP1-212ENST00000596163 SHROOM4Q9ULL8 1493 aa33.51■■■□□ 2.96
SHKBP1-212ENST00000596163 DNAJC5BQ9UF47 199 aa33.26■■■□□ 2.91
SHKBP1-212ENST00000596163 EIF4G1Q04637 1599 aaKnown RBP32.88■■■□□ 2.85
SHKBP1-212ENST00000596163 CC2D2AQ9P2K1 1620 aa32.73■■■□□ 2.83
SHKBP1-212ENST00000596163 CECR2Q9BXF3 1484 aa32.59■■■□□ 2.81
SHKBP1-212ENST00000596163 BAZ1AQ9NRL2 1556 aaPredicted RBP32.32■■■□□ 2.76
SHKBP1-212ENST00000596163 SMARCA4P51532 1647 aa32.29■■■□□ 2.76
SHKBP1-212ENST00000596163 NCAPD3P42695 1498 aa32.18■■■□□ 2.74
SHKBP1-212ENST00000596163 ATAD2BQ9ULI0 1458 aa32.17■■■□□ 2.74
SHKBP1-212ENST00000596163 SMARCA2P51531 1590 aa32.15■■■□□ 2.74
SHKBP1-212ENST00000596163 MROH2BQ7Z745 1585 aa32.08■■■□□ 2.73
SHKBP1-212ENST00000596163 PEG3Q9GZU2 1588 aa31.99■■■□□ 2.71
SHKBP1-212ENST00000596163 HMGXB3Q12766 1538 aa31.97■■■□□ 2.71
SHKBP1-212ENST00000596163 BAZ1BQ9UIG0 1483 aaKnown RBP31.92■■■□□ 2.7
SHKBP1-212ENST00000596163 RSF1Q96T23 1441 aaPredicted RBP31.78■■■□□ 2.68
SHKBP1-212ENST00000596163 WIZO95785 1651 aa31.69■■■□□ 2.66
SHKBP1-212ENST00000596163 TOP2AP11388 1531 aaKnown RBP31.43■■■□□ 2.62
SHKBP1-212ENST00000596163 NESP48681 1621 aa31.31■■■□□ 2.6
SHKBP1-212ENST00000596163 ERCC6Q03468 1493 aa31.3■■■□□ 2.6
SHKBP1-212ENST00000596163 LAMC3Q9Y6N6 1575 aa31.29■■■□□ 2.6
SHKBP1-212ENST00000596163 CADPSQ9ULU8 1353 aa31.28■■■□□ 2.6
SHKBP1-212ENST00000596163 PDS5BQ9NTI5 1447 aa31.18■■■□□ 2.58
SHKBP1-212ENST00000596163 CCDC88BA6NC98 1476 aa31.08■■■□□ 2.57
SHKBP1-212ENST00000596163 SUPT5HO00267 1087 aaKnown RBP31.07■■■□□ 2.56
SHKBP1-212ENST00000596163 CFTRP13569 1480 aa31.05■■■□□ 2.56
SHKBP1-212ENST00000596163 CUX2O14529 1486 aa30.95■■■□□ 2.54
SHKBP1-212ENST00000596163 KIF21AQ7Z4S6 1674 aa30.87■■■□□ 2.53
SHKBP1-212ENST00000596163 FANCD2Q9BXW9 1451 aa30.87■■■□□ 2.53
SHKBP1-212ENST00000596163 CEP164Q9UPV0 1460 aa30.83■■■□□ 2.53
SHKBP1-212ENST00000596163 THOC2Q8NI27 1593 aaKnown RBP30.79■■■□□ 2.52
SHKBP1-212ENST00000596163 MRC2Q9UBG0 1479 aa30.78■■■□□ 2.52
SHKBP1-212ENST00000596163 PRDM2Q13029 1718 aa30.64■■■□□ 2.5
SHKBP1-212ENST00000596163 WDR62O43379 1518 aa30.63■■■□□ 2.49
SHKBP1-212ENST00000596163 URB2Q14146 1524 aaKnown RBP30.52■■■□□ 2.48
SHKBP1-212ENST00000596163 ABCC8Q09428 1581 aa30.45■■■□□ 2.47
SHKBP1-212ENST00000596163 DNAJC5Q9H3Z4 198 aa30.4■■■□□ 2.46
SHKBP1-212ENST00000596163 TOPBP1Q92547 1522 aa30.35■■■□□ 2.45
SHKBP1-212ENST00000596163 DNMBPQ6XZF7 1577 aa30.31■■■□□ 2.44
SHKBP1-212ENST00000596163 IFT140Q96RY7 1462 aa30.22■■■□□ 2.43
SHKBP1-212ENST00000596163 POLA1P09884 1462 aaPredicted RBP30.1■■■□□ 2.41
SHKBP1-212ENST00000596163 CUX1P39880 1505 aa30.09■■■□□ 2.41
SHKBP1-212ENST00000596163 SOGA1O94964 1423 aa30.05■■■□□ 2.4
SHKBP1-212ENST00000596163 FGD5Q6ZNL6 1462 aa30.03■■■□□ 2.4
SHKBP1-212ENST00000596163 ZNF608Q9ULD9 1512 aaPredicted RBP30■■■□□ 2.39
SHKBP1-212ENST00000596163 WRNQ14191 1432 aaPredicted RBP eCLIP29.99■■■□□ 2.39
SHKBP1-212ENST00000596163 RAD54L2Q9Y4B4 1467 aa29.97■■■□□ 2.39
SHKBP1-212ENST00000596163 TARBP1Q13395 1621 aaKnown RBP29.96■■■□□ 2.39
SHKBP1-212ENST00000596163 AQRO60306 1485 aaKnown RBP eCLIP29.88■■■□□ 2.37
SHKBP1-212ENST00000596163 TDRD9Q8NDG6 1382 aaKnown RBP29.86■■■□□ 2.37
SHKBP1-212ENST00000596163 TOP2BQ02880 1626 aa29.85■■■□□ 2.37
SHKBP1-212ENST00000596163 EIF4G3O43432 1585 aaKnown RBP29.84■■■□□ 2.37
SHKBP1-212ENST00000596163 BIVM-ERCC5R4GMW8 1640 aa29.81■■■□□ 2.36
SHKBP1-212ENST00000596163 WDR97A6NE52 1622 aa29.8■■■□□ 2.36
SHKBP1-212ENST00000596163 SYNJ1O43426 1573 aa29.8■■■□□ 2.36
SHKBP1-212ENST00000596163 OSCARQ8IYS5 282 aa29.77■■■□□ 2.36
SHKBP1-212ENST00000596163 ABCA10Q8WWZ4 1543 aa29.76■■■□□ 2.35
SHKBP1-212ENST00000596163 GRIN2BQ13224 1484 aa29.68■■■□□ 2.34
SHKBP1-212ENST00000596163 GAPVD1Q14C86 1478 aa29.67■■■□□ 2.34
SHKBP1-212ENST00000596163 FBLN2P98095 1184 aa29.62■■■□□ 2.33
SHKBP1-212ENST00000596163 MAGI1Q96QZ7 1491 aaPredicted RBP29.59■■■□□ 2.33
SHKBP1-212ENST00000596163 SNAPC4Q5SXM2 1469 aa29.58■■■□□ 2.33
SHKBP1-212ENST00000596163 CHMP7Q8WUX9 453 aaPredicted RBP29.57■■■□□ 2.32
SHKBP1-212ENST00000596163 ABCA5Q8WWZ7 1642 aa29.55■■■□□ 2.32
SHKBP1-212ENST00000596163 SYNJ2O15056 1496 aa29.47■■■□□ 2.31
SHKBP1-212ENST00000596163 PBRM1Q86U86 1689 aa29.46■■■□□ 2.31
SHKBP1-212ENST00000596163 CHD1O14646 1710 aa29.41■■■□□ 2.3
SHKBP1-212ENST00000596163 KIF27Q86VH2 1401 aa29.41■■■□□ 2.3
SHKBP1-212ENST00000596163 ERICH3Q5RHP9 1530 aa29.4■■■□□ 2.3
SHKBP1-212ENST00000596163 TRIM41Q8WV44 630 aa29.39■■■□□ 2.3
SHKBP1-212ENST00000596163 FHAD1B1AJZ9 1412 aa29.36■■■□□ 2.29
SHKBP1-212ENST00000596163 ADAMTS12P58397 1594 aa29.28■■■□□ 2.28
SHKBP1-212ENST00000596163 IGF1RP08069 1367 aa29.26■■■□□ 2.28
SHKBP1-212ENST00000596163 GRIN2AQ12879 1464 aa29.26■■■□□ 2.27
SHKBP1-212ENST00000596163 CLASP1Q7Z460 1538 aa29.16■■■□□ 2.26
SHKBP1-212ENST00000596163 NUP160Q12769 1436 aa29.13■■■□□ 2.25
SHKBP1-212ENST00000596163 ARHGEF11O15085 1522 aa29.13■■■□□ 2.25
SHKBP1-212ENST00000596163 CARMIL1Q5VZK9 1371 aa29.11■■■□□ 2.25
SHKBP1-212ENST00000596163 CUL7Q14999 1698 aa29.1■■■□□ 2.25
SHKBP1-212ENST00000596163 RIMBP3CA6NJZ7 1639 aa29.09■■■□□ 2.25
SHKBP1-212ENST00000596163 RIMBP3BA6NNM3 1639 aa29.09■■■□□ 2.25
SHKBP1-212ENST00000596163 RIMBP3Q9UFD9 1639 aa29.09■■■□□ 2.25
SHKBP1-212ENST00000596163 CEP170Q5SW79 1584 aa29.05■■■□□ 2.24
SHKBP1-212ENST00000596163 RUSC2Q8N2Y8 1516 aa29.02■■■□□ 2.24
SHKBP1-212ENST00000596163 CHIC1Q5VXU3 224 aa28.98■■■□□ 2.23
SHKBP1-212ENST00000596163 CYB5RLQ6IPT4 315 aa28.98■■■□□ 2.23
SHKBP1-212ENST00000596163 JPH4Q96JJ6 628 aa28.93■■■□□ 2.22
SHKBP1-212ENST00000596163 RAPGEF2Q9Y4G8 1499 aa28.91■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms