RNA–Protein interactions for RNA: ENST00000594724.5

USE1-205, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 3

Gene USE1, Length 744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-205ENST00000594724 NISCHQ9Y2I1 1504 aa36.13■■■■□ 3.38
USE1-205ENST00000594724 CCDC180Q9P1Z9 1646 aa32.13■■■□□ 2.73
USE1-205ENST00000594724 ABCC9O60706 1549 aa31.81■■■□□ 2.68
USE1-205ENST00000594724 DCAF8L2P0C7V8 631 aa30.45■■■□□ 2.47
USE1-205ENST00000594724 RB1CC1Q8TDY2 1594 aa30.41■■■□□ 2.46
USE1-205ENST00000594724 NACADO15069 1562 aa30.31■■■□□ 2.44
USE1-205ENST00000594724 ZCCHC6Q5VYS8 1495 aaKnown RBP30.03■■■□□ 2.4
USE1-205ENST00000594724 MYO15BQ96JP2 1530 aa30.01■■■□□ 2.4
USE1-205ENST00000594724 DCAF1Q9Y4B6 1507 aa29.82■■■□□ 2.36
USE1-205ENST00000594724 PABPN1Q86U42 306 aaKnown RBP eCLIP29.75■■■□□ 2.35
USE1-205ENST00000594724 UNC13AQ9UPW8 1703 aa29.71■■■□□ 2.35
USE1-205ENST00000594724 BICRAQ9NZM4 1560 aa29.52■■■□□ 2.32
USE1-205ENST00000594724 DNAJC5BQ9UF47 199 aa29.47■■■□□ 2.31
USE1-205ENST00000594724 SCRIBQ14160 1630 aa29.41■■■□□ 2.3
USE1-205ENST00000594724 SHROOM4Q9ULL8 1493 aa29.09■■■□□ 2.25
USE1-205ENST00000594724 EIF4G1Q04637 1599 aaKnown RBP28.75■■■□□ 2.19
USE1-205ENST00000594724 CC2D2AQ9P2K1 1620 aa28.71■■■□□ 2.19
USE1-205ENST00000594724 CECR2Q9BXF3 1484 aa28.57■■■□□ 2.16
USE1-205ENST00000594724 SMARCA4P51532 1647 aa28.07■■■□□ 2.08
USE1-205ENST00000594724 NCAPD3P42695 1498 aa28.01■■■□□ 2.07
USE1-205ENST00000594724 ATAD2BQ9ULI0 1458 aa28.01■■■□□ 2.07
USE1-205ENST00000594724 BAZ1AQ9NRL2 1556 aaPredicted RBP27.99■■■□□ 2.07
USE1-205ENST00000594724 SMARCA2P51531 1590 aa27.91■■■□□ 2.06
USE1-205ENST00000594724 MROH2BQ7Z745 1585 aa27.88■■■□□ 2.05
USE1-205ENST00000594724 HMGXB3Q12766 1538 aa27.8■■■□□ 2.04
USE1-205ENST00000594724 PEG3Q9GZU2 1588 aa27.76■■■□□ 2.03
USE1-205ENST00000594724 BAZ1BQ9UIG0 1483 aaKnown RBP27.76■■■□□ 2.03
USE1-205ENST00000594724 WIZO95785 1651 aa27.56■■■□□ 2
USE1-205ENST00000594724 RSF1Q96T23 1441 aaPredicted RBP27.49■■□□□ 1.99
USE1-205ENST00000594724 NESP48681 1621 aa27.46■■□□□ 1.99
USE1-205ENST00000594724 ERCC6Q03468 1493 aa27.4■■□□□ 1.98
USE1-205ENST00000594724 LAMC3Q9Y6N6 1575 aa27.27■■□□□ 1.96
USE1-205ENST00000594724 CADPSQ9ULU8 1353 aa27.21■■□□□ 1.95
USE1-205ENST00000594724 TOP2AP11388 1531 aaKnown RBP27.21■■□□□ 1.95
USE1-205ENST00000594724 CUX2O14529 1486 aa27.14■■□□□ 1.94
USE1-205ENST00000594724 PDS5BQ9NTI5 1447 aa27.13■■□□□ 1.93
USE1-205ENST00000594724 KIF21AQ7Z4S6 1674 aa27.06■■□□□ 1.92
USE1-205ENST00000594724 THOC2Q8NI27 1593 aaKnown RBP27.01■■□□□ 1.91
USE1-205ENST00000594724 CFTRP13569 1480 aa26.97■■□□□ 1.91
USE1-205ENST00000594724 CCDC88BA6NC98 1476 aa26.95■■□□□ 1.91
USE1-205ENST00000594724 FANCD2Q9BXW9 1451 aa26.89■■□□□ 1.9
USE1-205ENST00000594724 MRC2Q9UBG0 1479 aa26.86■■□□□ 1.89
USE1-205ENST00000594724 CEP164Q9UPV0 1460 aa26.86■■□□□ 1.89
USE1-205ENST00000594724 WDR62O43379 1518 aa26.75■■□□□ 1.87
USE1-205ENST00000594724 SUPT5HO00267 1087 aaKnown RBP26.73■■□□□ 1.87
USE1-205ENST00000594724 DNAJC5Q9H3Z4 198 aa26.66■■□□□ 1.86
USE1-205ENST00000594724 PRDM2Q13029 1718 aa26.65■■□□□ 1.86
USE1-205ENST00000594724 URB2Q14146 1524 aaKnown RBP26.64■■□□□ 1.85
USE1-205ENST00000594724 TOPBP1Q92547 1522 aa26.43■■□□□ 1.82
USE1-205ENST00000594724 ABCC8Q09428 1581 aa26.37■■□□□ 1.81
USE1-205ENST00000594724 DNMBPQ6XZF7 1577 aa26.34■■□□□ 1.81
USE1-205ENST00000594724 IFT140Q96RY7 1462 aa26.3■■□□□ 1.8
USE1-205ENST00000594724 ZNF608Q9ULD9 1512 aaPredicted RBP26.25■■□□□ 1.79
USE1-205ENST00000594724 POLA1P09884 1462 aaPredicted RBP26.18■■□□□ 1.78
USE1-205ENST00000594724 CUX1P39880 1505 aa26.16■■□□□ 1.78
USE1-205ENST00000594724 TARBP1Q13395 1621 aaKnown RBP26.14■■□□□ 1.77
USE1-205ENST00000594724 RAD54L2Q9Y4B4 1467 aa26.13■■□□□ 1.77
USE1-205ENST00000594724 SOGA1O94964 1423 aa26.11■■□□□ 1.77
USE1-205ENST00000594724 FGD5Q6ZNL6 1462 aa26.11■■□□□ 1.77
USE1-205ENST00000594724 AQRO60306 1485 aaKnown RBP eCLIP26.1■■□□□ 1.779e-7■■■■■ 33.4
USE1-205ENST00000594724 EIF4G3O43432 1585 aaKnown RBP26.07■■□□□ 1.76
USE1-205ENST00000594724 OSCARQ8IYS5 282 aa26.07■■□□□ 1.76
USE1-205ENST00000594724 TDRD9Q8NDG6 1382 aaKnown RBP26.02■■□□□ 1.76
USE1-205ENST00000594724 WRNQ14191 1432 aaPredicted RBP eCLIP25.91■■□□□ 1.74
USE1-205ENST00000594724 FBLN2P98095 1184 aa25.87■■□□□ 1.73
USE1-205ENST00000594724 SYNJ1O43426 1573 aa25.85■■□□□ 1.73
USE1-205ENST00000594724 WDR97A6NE52 1622 aa25.83■■□□□ 1.73
USE1-205ENST00000594724 TOP2BQ02880 1626 aa25.83■■□□□ 1.73
USE1-205ENST00000594724 BIVM-ERCC5R4GMW8 1640 aa25.81■■□□□ 1.72
USE1-205ENST00000594724 ABCA10Q8WWZ4 1543 aa25.81■■□□□ 1.72
USE1-205ENST00000594724 SNAPC4Q5SXM2 1469 aa25.8■■□□□ 1.72
USE1-205ENST00000594724 GRIN2BQ13224 1484 aa25.79■■□□□ 1.72
USE1-205ENST00000594724 CHD1O14646 1710 aa25.79■■□□□ 1.72
USE1-205ENST00000594724 GAPVD1Q14C86 1478 aa25.79■■□□□ 1.72
USE1-205ENST00000594724 TRIM41Q8WV44 630 aa25.75■■□□□ 1.71
USE1-205ENST00000594724 CHMP7Q8WUX9 453 aaPredicted RBP25.73■■□□□ 1.71
USE1-205ENST00000594724 MAGI1Q96QZ7 1491 aaPredicted RBP25.72■■□□□ 1.71
USE1-205ENST00000594724 ABCA5Q8WWZ7 1642 aa25.7■■□□□ 1.71
USE1-205ENST00000594724 PBRM1Q86U86 1689 aa25.68■■□□□ 1.7
USE1-205ENST00000594724 SYNJ2O15056 1496 aa25.64■■□□□ 1.69
USE1-205ENST00000594724 RIMBP3CA6NJZ7 1639 aa25.62■■□□□ 1.69
USE1-205ENST00000594724 RIMBP3BA6NNM3 1639 aa25.62■■□□□ 1.69
USE1-205ENST00000594724 RIMBP3Q9UFD9 1639 aa25.62■■□□□ 1.69
USE1-205ENST00000594724 ARHGEF11O15085 1522 aa25.59■■□□□ 1.69
USE1-205ENST00000594724 CLASP1Q7Z460 1538 aa25.51■■□□□ 1.67
USE1-205ENST00000594724 ERICH3Q5RHP9 1530 aa25.48■■□□□ 1.67
USE1-205ENST00000594724 ADAMTS12P58397 1594 aa25.48■■□□□ 1.67
USE1-205ENST00000594724 FHAD1B1AJZ9 1412 aa25.46■■□□□ 1.67
USE1-205ENST00000594724 CYB5RLQ6IPT4 315 aa25.46■■□□□ 1.67
USE1-205ENST00000594724 GRIN2AQ12879 1464 aa25.46■■□□□ 1.67
USE1-205ENST00000594724 ARAP1Q96P48 1450 aa25.38■■□□□ 1.65
USE1-205ENST00000594724 KIF27Q86VH2 1401 aa25.37■■□□□ 1.65
USE1-205ENST00000594724 NUP160Q12769 1436 aa25.35■■□□□ 1.65
USE1-205ENST00000594724 IGF1RP08069 1367 aa25.34■■□□□ 1.65
USE1-205ENST00000594724 CEP170Q5SW79 1584 aa25.34■■□□□ 1.65
USE1-205ENST00000594724 ERCC6L2Q5T890 1561 aa25.2■■□□□ 1.62
USE1-205ENST00000594724 CARMIL1Q5VZK9 1371 aa25.18■■□□□ 1.62
USE1-205ENST00000594724 CUL7Q14999 1698 aa25.18■■□□□ 1.62
USE1-205ENST00000594724 JPH4Q96JJ6 628 aa25.17■■□□□ 1.62
USE1-205ENST00000594724 RUSC2Q8N2Y8 1516 aa25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms