RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 NISCHQ9Y2I1 1504 aa36.27■■■■□ 3.4
UPF1-202ENST00000594243 CCDC180Q9P1Z9 1646 aa32.19■■■□□ 2.74
UPF1-202ENST00000594243 ABCC9O60706 1549 aa31.49■■■□□ 2.63
UPF1-202ENST00000594243 DCAF8L2P0C7V8 631 aa30.39■■■□□ 2.46
UPF1-202ENST00000594243 RB1CC1Q8TDY2 1594 aa30.32■■■□□ 2.45
UPF1-202ENST00000594243 NACADO15069 1562 aa30.31■■■□□ 2.44
UPF1-202ENST00000594243 ZCCHC6Q5VYS8 1495 aaKnown RBP30.19■■■□□ 2.42
UPF1-202ENST00000594243 MYO15BQ96JP2 1530 aa30.14■■■□□ 2.42
UPF1-202ENST00000594243 DCAF1Q9Y4B6 1507 aa30.02■■■□□ 2.4
UPF1-202ENST00000594243 UNC13AQ9UPW8 1703 aa29.54■■■□□ 2.32
UPF1-202ENST00000594243 PABPN1Q86U42 306 aaKnown RBP eCLIP29.47■■■□□ 2.31
UPF1-202ENST00000594243 SCRIBQ14160 1630 aa29.36■■■□□ 2.29
UPF1-202ENST00000594243 BICRAQ9NZM4 1560 aa29.35■■■□□ 2.29
UPF1-202ENST00000594243 DNAJC5BQ9UF47 199 aa29.21■■■□□ 2.27
UPF1-202ENST00000594243 SHROOM4Q9ULL8 1493 aa29.1■■■□□ 2.25
UPF1-202ENST00000594243 EIF4G1Q04637 1599 aaKnown RBP28.6■■■□□ 2.17
UPF1-202ENST00000594243 CC2D2AQ9P2K1 1620 aa28.47■■■□□ 2.15
UPF1-202ENST00000594243 CECR2Q9BXF3 1484 aa28.3■■■□□ 2.12
UPF1-202ENST00000594243 BAZ1AQ9NRL2 1556 aaPredicted RBP28.12■■■□□ 2.09
UPF1-202ENST00000594243 SMARCA4P51532 1647 aa28.1■■■□□ 2.09
UPF1-202ENST00000594243 NCAPD3P42695 1498 aa27.98■■■□□ 2.07
UPF1-202ENST00000594243 ATAD2BQ9ULI0 1458 aa27.97■■■□□ 2.07
UPF1-202ENST00000594243 SMARCA2P51531 1590 aa27.95■■■□□ 2.07
UPF1-202ENST00000594243 MROH2BQ7Z745 1585 aa27.93■■■□□ 2.06
UPF1-202ENST00000594243 PEG3Q9GZU2 1588 aa27.85■■■□□ 2.05
UPF1-202ENST00000594243 HMGXB3Q12766 1538 aa27.8■■■□□ 2.04
UPF1-202ENST00000594243 BAZ1BQ9UIG0 1483 aaKnown RBP27.76■■■□□ 2.03
UPF1-202ENST00000594243 RSF1Q96T23 1441 aaPredicted RBP27.66■■■□□ 2.02
UPF1-202ENST00000594243 WIZO95785 1651 aa27.62■■■□□ 2.01
UPF1-202ENST00000594243 TOP2AP11388 1531 aaKnown RBP27.35■■□□□ 1.97
UPF1-202ENST00000594243 NESP48681 1621 aa27.24■■□□□ 1.95
UPF1-202ENST00000594243 LAMC3Q9Y6N6 1575 aa27.22■■□□□ 1.95
UPF1-202ENST00000594243 CADPSQ9ULU8 1353 aa27.18■■□□□ 1.94
UPF1-202ENST00000594243 ERCC6Q03468 1493 aa27.17■■□□□ 1.94
UPF1-202ENST00000594243 PDS5BQ9NTI5 1447 aa27.07■■□□□ 1.92
UPF1-202ENST00000594243 CCDC88BA6NC98 1476 aa27.05■■□□□ 1.92
UPF1-202ENST00000594243 SUPT5HO00267 1087 aaKnown RBP27.04■■□□□ 1.92
UPF1-202ENST00000594243 CFTRP13569 1480 aa27■■□□□ 1.91
UPF1-202ENST00000594243 KIF21AQ7Z4S6 1674 aa26.89■■□□□ 1.9
UPF1-202ENST00000594243 CUX2O14529 1486 aa26.87■■□□□ 1.89
UPF1-202ENST00000594243 FANCD2Q9BXW9 1451 aa26.84■■□□□ 1.89
UPF1-202ENST00000594243 CEP164Q9UPV0 1460 aa26.8■■□□□ 1.88
UPF1-202ENST00000594243 THOC2Q8NI27 1593 aaKnown RBP26.79■■□□□ 1.88
UPF1-202ENST00000594243 MRC2Q9UBG0 1479 aa26.74■■□□□ 1.87
UPF1-202ENST00000594243 PRDM2Q13029 1718 aa26.72■■□□□ 1.87
UPF1-202ENST00000594243 DNAJC5Q9H3Z4 198 aa26.7■■□□□ 1.86
UPF1-202ENST00000594243 WDR62O43379 1518 aa26.64■■□□□ 1.85
UPF1-202ENST00000594243 URB2Q14146 1524 aaKnown RBP26.54■■□□□ 1.84
UPF1-202ENST00000594243 ABCC8Q09428 1581 aa26.46■■□□□ 1.83
UPF1-202ENST00000594243 TOPBP1Q92547 1522 aa26.39■■□□□ 1.82
UPF1-202ENST00000594243 DNMBPQ6XZF7 1577 aa26.37■■□□□ 1.81
UPF1-202ENST00000594243 IFT140Q96RY7 1462 aa26.25■■□□□ 1.79
UPF1-202ENST00000594243 CUX1P39880 1505 aa26.19■■□□□ 1.78
UPF1-202ENST00000594243 POLA1P09884 1462 aaPredicted RBP26.17■■□□□ 1.78
UPF1-202ENST00000594243 SOGA1O94964 1423 aa26.13■■□□□ 1.77
UPF1-202ENST00000594243 FGD5Q6ZNL6 1462 aa26.11■■□□□ 1.77
UPF1-202ENST00000594243 WRNQ14191 1432 aaPredicted RBP eCLIP26.09■■□□□ 1.77
UPF1-202ENST00000594243 ZNF608Q9ULD9 1512 aaPredicted RBP26.09■■□□□ 1.77
UPF1-202ENST00000594243 TARBP1Q13395 1621 aaKnown RBP26.08■■□□□ 1.77
UPF1-202ENST00000594243 RAD54L2Q9Y4B4 1467 aa26.06■■□□□ 1.76
UPF1-202ENST00000594243 TOP2BQ02880 1626 aa25.99■■□□□ 1.75
UPF1-202ENST00000594243 AQRO60306 1485 aaKnown RBP eCLIP25.98■■□□□ 1.751e-10■■■■■ 30.7
UPF1-202ENST00000594243 BIVM-ERCC5R4GMW8 1640 aa25.97■■□□□ 1.75
UPF1-202ENST00000594243 SYNJ1O43426 1573 aa25.96■■□□□ 1.75
UPF1-202ENST00000594243 EIF4G3O43432 1585 aaKnown RBP25.96■■□□□ 1.75
UPF1-202ENST00000594243 TDRD9Q8NDG6 1382 aaKnown RBP25.95■■□□□ 1.74
UPF1-202ENST00000594243 WDR97A6NE52 1622 aa25.92■■□□□ 1.74
UPF1-202ENST00000594243 ABCA10Q8WWZ4 1543 aa25.88■■□□□ 1.73
UPF1-202ENST00000594243 OSCARQ8IYS5 282 aa25.84■■□□□ 1.73
UPF1-202ENST00000594243 GRIN2BQ13224 1484 aa25.79■■□□□ 1.72
UPF1-202ENST00000594243 GAPVD1Q14C86 1478 aa25.79■■□□□ 1.72
UPF1-202ENST00000594243 ABCA5Q8WWZ7 1642 aa25.73■■□□□ 1.71
UPF1-202ENST00000594243 FBLN2P98095 1184 aa25.72■■□□□ 1.71
UPF1-202ENST00000594243 SNAPC4Q5SXM2 1469 aa25.72■■□□□ 1.71
UPF1-202ENST00000594243 MAGI1Q96QZ7 1491 aaPredicted RBP25.71■■□□□ 1.71
UPF1-202ENST00000594243 PBRM1Q86U86 1689 aa25.68■■□□□ 1.7
UPF1-202ENST00000594243 CHMP7Q8WUX9 453 aaPredicted RBP25.67■■□□□ 1.7
UPF1-202ENST00000594243 SYNJ2O15056 1496 aa25.61■■□□□ 1.69
UPF1-202ENST00000594243 CHD1O14646 1710 aa25.61■■□□□ 1.69
UPF1-202ENST00000594243 TRIM41Q8WV44 630 aa25.6■■□□□ 1.69
UPF1-202ENST00000594243 ERICH3Q5RHP9 1530 aa25.58■■□□□ 1.68
UPF1-202ENST00000594243 KIF27Q86VH2 1401 aa25.56■■□□□ 1.68
UPF1-202ENST00000594243 FHAD1B1AJZ9 1412 aa25.51■■□□□ 1.67
UPF1-202ENST00000594243 ADAMTS12P58397 1594 aa25.48■■□□□ 1.67
UPF1-202ENST00000594243 IGF1RP08069 1367 aa25.44■■□□□ 1.66
UPF1-202ENST00000594243 GRIN2AQ12879 1464 aa25.44■■□□□ 1.66
UPF1-202ENST00000594243 RIMBP3CA6NJZ7 1639 aa25.42■■□□□ 1.66
UPF1-202ENST00000594243 RIMBP3BA6NNM3 1639 aa25.42■■□□□ 1.66
UPF1-202ENST00000594243 RIMBP3Q9UFD9 1639 aa25.42■■□□□ 1.66
UPF1-202ENST00000594243 CLASP1Q7Z460 1538 aa25.37■■□□□ 1.65
UPF1-202ENST00000594243 CUL7Q14999 1698 aa25.33■■□□□ 1.65
UPF1-202ENST00000594243 NUP160Q12769 1436 aa25.32■■□□□ 1.64
UPF1-202ENST00000594243 ARHGEF11O15085 1522 aa25.32■■□□□ 1.64
UPF1-202ENST00000594243 CARMIL1Q5VZK9 1371 aa25.31■■□□□ 1.64
UPF1-202ENST00000594243 RUSC2Q8N2Y8 1516 aa25.28■■□□□ 1.64
UPF1-202ENST00000594243 CEP170Q5SW79 1584 aa25.27■■□□□ 1.64
UPF1-202ENST00000594243 CHIC1Q5VXU3 224 aa25.24■■□□□ 1.63
UPF1-202ENST00000594243 CYB5RLQ6IPT4 315 aa25.16■■□□□ 1.62
UPF1-202ENST00000594243 RAPGEF2Q9Y4G8 1499 aa25.15■■□□□ 1.62
UPF1-202ENST00000594243 JPH4Q96JJ6 628 aa25.14■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 1427.4 ms