RNA–Protein interactions for RNA: ENST00000593678.5

GTF2F1-202, Transcript of general transcription factor IIF subunit 1, humanhuman

TSL 2

Gene GTF2F1, Length 1,705 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2F1-202ENST00000593678 NISCHQ9Y2I1 1504 aa33.81■■■■□ 3
GTF2F1-202ENST00000593678 CCDC180Q9P1Z9 1646 aa29.57■■■□□ 2.32
GTF2F1-202ENST00000593678 ZCCHC6Q5VYS8 1495 aaKnown RBP28.37■■■□□ 2.13
GTF2F1-202ENST00000593678 DCAF8L2P0C7V8 631 aa28.06■■■□□ 2.08
GTF2F1-202ENST00000593678 ABCC9O60706 1549 aa28.02■■■□□ 2.08
GTF2F1-202ENST00000593678 DCAF1Q9Y4B6 1507 aa27.97■■■□□ 2.07
GTF2F1-202ENST00000593678 MYO15BQ96JP2 1530 aa27.68■■■□□ 2.02
GTF2F1-202ENST00000593678 NACADO15069 1562 aa27.57■■■□□ 2
GTF2F1-202ENST00000593678 SHROOM4Q9ULL8 1493 aa27.54■■■□□ 2
GTF2F1-202ENST00000593678 RB1CC1Q8TDY2 1594 aa27.38■■□□□ 1.97
GTF2F1-202ENST00000593678 SCRIBQ14160 1630 aa27.17■■□□□ 1.94
GTF2F1-202ENST00000593678 UNC13AQ9UPW8 1703 aa26.73■■□□□ 1.87
GTF2F1-202ENST00000593678 SUPT5HO00267 1087 aaKnown RBP26.49■■□□□ 1.83
GTF2F1-202ENST00000593678 BICRAQ9NZM4 1560 aa26.43■■□□□ 1.82
GTF2F1-202ENST00000593678 PABPN1Q86U42 306 aaKnown RBP eCLIP26.4■■□□□ 1.82
GTF2F1-202ENST00000593678 CECR2Q9BXF3 1484 aa26.23■■□□□ 1.79
GTF2F1-202ENST00000593678 RSF1Q96T23 1441 aaPredicted RBP26.18■■□□□ 1.78
GTF2F1-202ENST00000593678 BAZ1AQ9NRL2 1556 aaPredicted RBP26.17■■□□□ 1.78
GTF2F1-202ENST00000593678 MROH2BQ7Z745 1585 aa26.09■■□□□ 1.77
GTF2F1-202ENST00000593678 SMARCA4P51532 1647 aa26.03■■□□□ 1.76
GTF2F1-202ENST00000593678 WIZO95785 1651 aa25.89■■□□□ 1.73
GTF2F1-202ENST00000593678 EIF4G1Q04637 1599 aaKnown RBP25.72■■□□□ 1.71
GTF2F1-202ENST00000593678 PEG3Q9GZU2 1588 aa25.69■■□□□ 1.7
GTF2F1-202ENST00000593678 SMARCA2P51531 1590 aa25.66■■□□□ 1.7
GTF2F1-202ENST00000593678 TOP2AP11388 1531 aaKnown RBP25.65■■□□□ 1.7
GTF2F1-202ENST00000593678 ATAD2BQ9ULI0 1458 aa25.6■■□□□ 1.69
GTF2F1-202ENST00000593678 BAZ1BQ9UIG0 1483 aaKnown RBP25.52■■□□□ 1.68
GTF2F1-202ENST00000593678 NCAPD3P42695 1498 aa25.41■■□□□ 1.66
GTF2F1-202ENST00000593678 HMGXB3Q12766 1538 aa25.39■■□□□ 1.66
GTF2F1-202ENST00000593678 CCDC88BA6NC98 1476 aa25.36■■□□□ 1.65
GTF2F1-202ENST00000593678 CC2D2AQ9P2K1 1620 aa25.35■■□□□ 1.65
GTF2F1-202ENST00000593678 CHIC1Q5VXU3 224 aa25.24■■□□□ 1.63
GTF2F1-202ENST00000593678 TRIM41Q8WV44 630 aa24.95■■□□□ 1.58
GTF2F1-202ENST00000593678 CFTRP13569 1480 aa24.82■■□□□ 1.56
GTF2F1-202ENST00000593678 ABCC8Q09428 1581 aa24.8■■□□□ 1.56
GTF2F1-202ENST00000593678 CADPSQ9ULU8 1353 aa24.78■■□□□ 1.56
GTF2F1-202ENST00000593678 PRDM2Q13029 1718 aa24.73■■□□□ 1.55
GTF2F1-202ENST00000593678 WRNQ14191 1432 aaPredicted RBP eCLIP24.7■■□□□ 1.54
GTF2F1-202ENST00000593678 DNAJC5BQ9UF47 199 aa24.68■■□□□ 1.54
GTF2F1-202ENST00000593678 LAMC3Q9Y6N6 1575 aa24.6■■□□□ 1.53
GTF2F1-202ENST00000593678 SYNJ1O43426 1573 aa24.55■■□□□ 1.52
GTF2F1-202ENST00000593678 NESP48681 1621 aa24.53■■□□□ 1.52
GTF2F1-202ENST00000593678 FANCD2Q9BXW9 1451 aa24.51■■□□□ 1.51
GTF2F1-202ENST00000593678 TOP2BQ02880 1626 aa24.49■■□□□ 1.51
GTF2F1-202ENST00000593678 FAM9AQ8IZU1 332 aaPredicted RBP24.46■■□□□ 1.51
GTF2F1-202ENST00000593678 PDS5BQ9NTI5 1447 aa24.46■■□□□ 1.51
GTF2F1-202ENST00000593678 BIVM-ERCC5R4GMW8 1640 aa24.46■■□□□ 1.51
GTF2F1-202ENST00000593678 CUX1P39880 1505 aa24.41■■□□□ 1.5
GTF2F1-202ENST00000593678 CEP164Q9UPV0 1460 aa24.39■■□□□ 1.5
GTF2F1-202ENST00000593678 EEA1Q15075 1411 aa24.35■■□□□ 1.49
GTF2F1-202ENST00000593678 SOGA1O94964 1423 aa24.3■■□□□ 1.48
GTF2F1-202ENST00000593678 DNMBPQ6XZF7 1577 aa24.27■■□□□ 1.48
GTF2F1-202ENST00000593678 KIF21AQ7Z4S6 1674 aa24.27■■□□□ 1.48
GTF2F1-202ENST00000593678 LOC105371045A0A1W2PR82 267 aa24.26■■□□□ 1.47
GTF2F1-202ENST00000593678 TOPBP1Q92547 1522 aa24.21■■□□□ 1.47
GTF2F1-202ENST00000593678 FGD5Q6ZNL6 1462 aa24.2■■□□□ 1.46
GTF2F1-202ENST00000593678 CSRNP3Q8WYN3 585 aa24.18■■□□□ 1.46
GTF2F1-202ENST00000593678 RUSC2Q8N2Y8 1516 aa24.17■■□□□ 1.46
GTF2F1-202ENST00000593678 URB2Q14146 1524 aaKnown RBP24.16■■□□□ 1.46
GTF2F1-202ENST00000593678 ERCC6Q03468 1493 aa24.13■■□□□ 1.45
GTF2F1-202ENST00000593678 KIF27Q86VH2 1401 aa24.12■■□□□ 1.45
GTF2F1-202ENST00000593678 EHMT2Q96KQ7 1210 aa24.11■■□□□ 1.45
GTF2F1-202ENST00000593678 MRC2Q9UBG0 1479 aa24.11■■□□□ 1.45
GTF2F1-202ENST00000593678 POLA1P09884 1462 aaPredicted RBP24.09■■□□□ 1.45
GTF2F1-202ENST00000593678 CUX2O14529 1486 aa24.04■■□□□ 1.44
GTF2F1-202ENST00000593678 GOLGA3Q08378 1498 aa23.98■■□□□ 1.43
GTF2F1-202ENST00000593678 RAD54L2Q9Y4B4 1467 aa23.98■■□□□ 1.43
GTF2F1-202ENST00000593678 KIF21BO75037 1637 aa23.98■■□□□ 1.43
GTF2F1-202ENST00000593678 ABCA10Q8WWZ4 1543 aa23.98■■□□□ 1.43
GTF2F1-202ENST00000593678 WDR62O43379 1518 aa23.96■■□□□ 1.43
GTF2F1-202ENST00000593678 UBTFP17480 764 aaKnown RBP23.93■■□□□ 1.42
GTF2F1-202ENST00000593678 THOC2Q8NI27 1593 aaKnown RBP23.88■■□□□ 1.41
GTF2F1-202ENST00000593678 WDR97A6NE52 1622 aa23.88■■□□□ 1.41
GTF2F1-202ENST00000593678 TNIKQ9UKE5 1360 aa23.86■■□□□ 1.41
GTF2F1-202ENST00000593678 ERICH3Q5RHP9 1530 aa23.85■■□□□ 1.41
GTF2F1-202ENST00000593678 PRXQ9BXM0 1461 aa23.84■■□□□ 1.41
GTF2F1-202ENST00000593678 RAPGEF2Q9Y4G8 1499 aa23.83■■□□□ 1.41
GTF2F1-202ENST00000593678 IGF1RP08069 1367 aa23.83■■□□□ 1.41
GTF2F1-202ENST00000593678 TARBP1Q13395 1621 aaKnown RBP23.83■■□□□ 1.41
GTF2F1-202ENST00000593678 IFT140Q96RY7 1462 aa23.81■■□□□ 1.4
GTF2F1-202ENST00000593678 TDRD9Q8NDG6 1382 aaKnown RBP23.79■■□□□ 1.4
GTF2F1-202ENST00000593678 ABCA5Q8WWZ7 1642 aa23.78■■□□□ 1.4
GTF2F1-202ENST00000593678 GAPVD1Q14C86 1478 aa23.77■■□□□ 1.4
GTF2F1-202ENST00000593678 CARMIL1Q5VZK9 1371 aa23.76■■□□□ 1.39
GTF2F1-202ENST00000593678 CUL7Q14999 1698 aa23.74■■□□□ 1.39
GTF2F1-202ENST00000593678 CEP162Q5TB80 1403 aa23.73■■□□□ 1.39
GTF2F1-202ENST00000593678 PBRM1Q86U86 1689 aa23.64■■□□□ 1.38
GTF2F1-202ENST00000593678 AQRO60306 1485 aaKnown RBP eCLIP23.64■■□□□ 1.373e-6■■□□□ 12.6
GTF2F1-202ENST00000593678 GRIN2BQ13224 1484 aa23.61■■□□□ 1.37
GTF2F1-202ENST00000593678 ZNF608Q9ULD9 1512 aaPredicted RBP23.61■■□□□ 1.37
GTF2F1-202ENST00000593678 CLIP1P30622 1438 aa23.59■■□□□ 1.37
GTF2F1-202ENST00000593678 EIF4G3O43432 1585 aaKnown RBP23.57■■□□□ 1.36
GTF2F1-202ENST00000593678 RANGAP1P46060 587 aaPredicted RBP23.55■■□□□ 1.36
GTF2F1-202ENST00000593678 FHAD1B1AJZ9 1412 aa23.52■■□□□ 1.36
GTF2F1-202ENST00000593678 ADAMTS12P58397 1594 aa23.5■■□□□ 1.35
GTF2F1-202ENST00000593678 SNAPC4Q5SXM2 1469 aa23.45■■□□□ 1.34
GTF2F1-202ENST00000593678 CTTNBP2Q8WZ74 1663 aa23.44■■□□□ 1.34
GTF2F1-202ENST00000593678 MAGI1Q96QZ7 1491 aaPredicted RBP23.43■■□□□ 1.34
GTF2F1-202ENST00000593678 VPS8Q8N3P4 1428 aa23.36■■□□□ 1.33
GTF2F1-202ENST00000593678 CHMP7Q8WUX9 453 aaPredicted RBP23.33■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms