RNA–Protein interactions for RNA: ENST00000592822.1

TPM4-216, Transcript of tropomyosin 4, humanhuman

TSL 5

Gene TPM4, Length 262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-216ENST00000592822 NISCHQ9Y2I1 1504 aa23.93■■□□□ 1.42
TPM4-216ENST00000592822 CCDC180Q9P1Z9 1646 aa21.2■□□□□ 0.98
TPM4-216ENST00000592822 ABCC9O60706 1549 aa20.58■□□□□ 0.89
TPM4-216ENST00000592822 ZCCHC6Q5VYS8 1495 aaKnown RBP19.97■□□□□ 0.79
TPM4-216ENST00000592822 DCAF8L2P0C7V8 631 aa19.9■□□□□ 0.78
TPM4-216ENST00000592822 NACADO15069 1562 aa19.88■□□□□ 0.77
TPM4-216ENST00000592822 RB1CC1Q8TDY2 1594 aa19.86■□□□□ 0.77
TPM4-216ENST00000592822 MYO15BQ96JP2 1530 aa19.81■□□□□ 0.76
TPM4-216ENST00000592822 DCAF1Q9Y4B6 1507 aa19.8■□□□□ 0.76
TPM4-216ENST00000592822 UNC13AQ9UPW8 1703 aa19.47■□□□□ 0.71
TPM4-216ENST00000592822 SCRIBQ14160 1630 aa19.36■□□□□ 0.69
TPM4-216ENST00000592822 BICRAQ9NZM4 1560 aa19.29■□□□□ 0.68
TPM4-216ENST00000592822 PABPN1Q86U42 306 aaKnown RBP eCLIP19.27■□□□□ 0.68
TPM4-216ENST00000592822 SHROOM4Q9ULL8 1493 aa19.04■□□□□ 0.64
TPM4-216ENST00000592822 DNAJC5BQ9UF47 199 aa18.77■□□□□ 0.6
TPM4-216ENST00000592822 EIF4G1Q04637 1599 aaKnown RBP18.75■□□□□ 0.59
TPM4-216ENST00000592822 CECR2Q9BXF3 1484 aa18.64■□□□□ 0.57
TPM4-216ENST00000592822 CC2D2AQ9P2K1 1620 aa18.63■□□□□ 0.57
TPM4-216ENST00000592822 SMARCA4P51532 1647 aa18.53■□□□□ 0.56
TPM4-216ENST00000592822 BAZ1AQ9NRL2 1556 aaPredicted RBP18.52■□□□□ 0.56
TPM4-216ENST00000592822 MROH2BQ7Z745 1585 aa18.46■□□□□ 0.55
TPM4-216ENST00000592822 ATAD2BQ9ULI0 1458 aa18.39■□□□□ 0.53
TPM4-216ENST00000592822 SMARCA2P51531 1590 aa18.36■□□□□ 0.53
TPM4-216ENST00000592822 PEG3Q9GZU2 1588 aa18.35■□□□□ 0.53
TPM4-216ENST00000592822 NCAPD3P42695 1498 aa18.35■□□□□ 0.53
TPM4-216ENST00000592822 RSF1Q96T23 1441 aaPredicted RBP18.3■□□□□ 0.52
TPM4-216ENST00000592822 WIZO95785 1651 aa18.27■□□□□ 0.52
TPM4-216ENST00000592822 HMGXB3Q12766 1538 aa18.26■□□□□ 0.51
TPM4-216ENST00000592822 BAZ1BQ9UIG0 1483 aaKnown RBP18.23■□□□□ 0.51
TPM4-216ENST00000592822 TOP2AP11388 1531 aaKnown RBP18.07■□□□□ 0.48
TPM4-216ENST00000592822 SUPT5HO00267 1087 aaKnown RBP17.95■□□□□ 0.46
TPM4-216ENST00000592822 NESP48681 1621 aa17.87■□□□□ 0.45
TPM4-216ENST00000592822 CCDC88BA6NC98 1476 aa17.87■□□□□ 0.45
TPM4-216ENST00000592822 LAMC3Q9Y6N6 1575 aa17.83■□□□□ 0.45
TPM4-216ENST00000592822 CADPSQ9ULU8 1353 aa17.81■□□□□ 0.44
TPM4-216ENST00000592822 CFTRP13569 1480 aa17.75■□□□□ 0.43
TPM4-216ENST00000592822 ERCC6Q03468 1493 aa17.69■□□□□ 0.42
TPM4-216ENST00000592822 PDS5BQ9NTI5 1447 aa17.69■□□□□ 0.42
TPM4-216ENST00000592822 KIF21AQ7Z4S6 1674 aa17.67■□□□□ 0.42
TPM4-216ENST00000592822 PRDM2Q13029 1718 aa17.65■□□□□ 0.42
TPM4-216ENST00000592822 FANCD2Q9BXW9 1451 aa17.62■□□□□ 0.41
TPM4-216ENST00000592822 CEP164Q9UPV0 1460 aa17.57■□□□□ 0.4
TPM4-216ENST00000592822 THOC2Q8NI27 1593 aaKnown RBP17.57■□□□□ 0.4
TPM4-216ENST00000592822 MRC2Q9UBG0 1479 aa17.51■□□□□ 0.39
TPM4-216ENST00000592822 WDR62O43379 1518 aa17.46■□□□□ 0.39
TPM4-216ENST00000592822 CUX2O14529 1486 aa17.45■□□□□ 0.38
TPM4-216ENST00000592822 URB2Q14146 1524 aaKnown RBP17.45■□□□□ 0.38
TPM4-216ENST00000592822 TOPBP1Q92547 1522 aa17.37■□□□□ 0.37
TPM4-216ENST00000592822 ABCC8Q09428 1581 aa17.35■□□□□ 0.37
TPM4-216ENST00000592822 DNMBPQ6XZF7 1577 aa17.35■□□□□ 0.37
TPM4-216ENST00000592822 CUX1P39880 1505 aa17.31■□□□□ 0.36
TPM4-216ENST00000592822 WRNQ14191 1432 aaPredicted RBP eCLIP17.22■□□□□ 0.35
TPM4-216ENST00000592822 POLA1P09884 1462 aaPredicted RBP17.22■□□□□ 0.35
TPM4-216ENST00000592822 FGD5Q6ZNL6 1462 aa17.21■□□□□ 0.35
TPM4-216ENST00000592822 SYNJ1O43426 1573 aa17.2■□□□□ 0.34
TPM4-216ENST00000592822 IFT140Q96RY7 1462 aa17.19■□□□□ 0.34
TPM4-216ENST00000592822 TOP2BQ02880 1626 aa17.19■□□□□ 0.34
TPM4-216ENST00000592822 BIVM-ERCC5R4GMW8 1640 aa17.19■□□□□ 0.34
TPM4-216ENST00000592822 TARBP1Q13395 1621 aaKnown RBP17.18■□□□□ 0.34
TPM4-216ENST00000592822 SOGA1O94964 1423 aa17.15■□□□□ 0.34
TPM4-216ENST00000592822 RAD54L2Q9Y4B4 1467 aa17.15■□□□□ 0.34
TPM4-216ENST00000592822 ZNF608Q9ULD9 1512 aaPredicted RBP17.12■□□□□ 0.33
TPM4-216ENST00000592822 WDR97A6NE52 1622 aa17.07■□□□□ 0.32
TPM4-216ENST00000592822 EIF4G3O43432 1585 aaKnown RBP17.06■□□□□ 0.32
TPM4-216ENST00000592822 AQRO60306 1485 aaKnown RBP eCLIP17.05■□□□□ 0.323e-10■■■■■ 28.2
TPM4-216ENST00000592822 ABCA10Q8WWZ4 1543 aa17.04■□□□□ 0.32
TPM4-216ENST00000592822 TDRD9Q8NDG6 1382 aaKnown RBP17.03■□□□□ 0.32
TPM4-216ENST00000592822 ABCA5Q8WWZ7 1642 aa16.98■□□□□ 0.31
TPM4-216ENST00000592822 GAPVD1Q14C86 1478 aa16.95■□□□□ 0.3
TPM4-216ENST00000592822 TRIM41Q8WV44 630 aa16.93■□□□□ 0.3
TPM4-216ENST00000592822 GRIN2BQ13224 1484 aa16.93■□□□□ 0.3
TPM4-216ENST00000592822 PBRM1Q86U86 1689 aa16.92■□□□□ 0.3
TPM4-216ENST00000592822 SNAPC4Q5SXM2 1469 aa16.88■□□□□ 0.29
TPM4-216ENST00000592822 CHIC1Q5VXU3 224 aa16.86■□□□□ 0.29
TPM4-216ENST00000592822 MAGI1Q96QZ7 1491 aaPredicted RBP16.86■□□□□ 0.29
TPM4-216ENST00000592822 KIF27Q86VH2 1401 aa16.85■□□□□ 0.29
TPM4-216ENST00000592822 ERICH3Q5RHP9 1530 aa16.84■□□□□ 0.29
TPM4-216ENST00000592822 CHD1O14646 1710 aa16.83■□□□□ 0.28
TPM4-216ENST00000592822 ADAMTS12P58397 1594 aa16.8■□□□□ 0.28
TPM4-216ENST00000592822 RUSC2Q8N2Y8 1516 aa16.8■□□□□ 0.28
TPM4-216ENST00000592822 SYNJ2O15056 1496 aa16.8■□□□□ 0.28
TPM4-216ENST00000592822 IGF1RP08069 1367 aa16.78■□□□□ 0.28
TPM4-216ENST00000592822 FBLN2P98095 1184 aa16.78■□□□□ 0.28
TPM4-216ENST00000592822 OSCARQ8IYS5 282 aa16.77■□□□□ 0.28
TPM4-216ENST00000592822 CHMP7Q8WUX9 453 aaPredicted RBP16.76■□□□□ 0.27
TPM4-216ENST00000592822 FHAD1B1AJZ9 1412 aa16.76■□□□□ 0.27
TPM4-216ENST00000592822 DNAJC5Q9H3Z4 198 aa16.74■□□□□ 0.27
TPM4-216ENST00000592822 GRIN2AQ12879 1464 aa16.72■□□□□ 0.27
TPM4-216ENST00000592822 CUL7Q14999 1698 aa16.72■□□□□ 0.27
TPM4-216ENST00000592822 CARMIL1Q5VZK9 1371 aa16.67■□□□□ 0.26
TPM4-216ENST00000592822 CEP170Q5SW79 1584 aa16.64■□□□□ 0.25
TPM4-216ENST00000592822 CLASP1Q7Z460 1538 aa16.64■□□□□ 0.25
TPM4-216ENST00000592822 NUP160Q12769 1436 aa16.63■□□□□ 0.25
TPM4-216ENST00000592822 EEA1Q15075 1411 aa16.62■□□□□ 0.25
TPM4-216ENST00000592822 CSRNP3Q8WYN3 585 aa16.6■□□□□ 0.25
TPM4-216ENST00000592822 FAM9AQ8IZU1 332 aaPredicted RBP16.59■□□□□ 0.25
TPM4-216ENST00000592822 PRXQ9BXM0 1461 aa16.59■□□□□ 0.25
TPM4-216ENST00000592822 RAPGEF2Q9Y4G8 1499 aa16.59■□□□□ 0.25
TPM4-216ENST00000592822 RIMBP3CA6NJZ7 1639 aa16.51■□□□□ 0.23
TPM4-216ENST00000592822 RIMBP3BA6NNM3 1639 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 249.9 ms