RNA–Protein interactions for RNA: ENST00000592628.5

TCF3-217, Transcript of transcription factor 3, humanhuman

TSL 5

Gene TCF3, Length 1,751 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF3-217ENST00000592628 NISCHQ9Y2I1 1504 aa36.11■■■■□ 3.37
TCF3-217ENST00000592628 CCDC180Q9P1Z9 1646 aa31.6■■■□□ 2.65
TCF3-217ENST00000592628 ZCCHC6Q5VYS8 1495 aaKnown RBP30.26■■■□□ 2.44
TCF3-217ENST00000592628 ABCC9O60706 1549 aa30.12■■■□□ 2.41
TCF3-217ENST00000592628 DCAF8L2P0C7V8 631 aa29.92■■■□□ 2.38
TCF3-217ENST00000592628 DCAF1Q9Y4B6 1507 aa29.84■■■□□ 2.37
TCF3-217ENST00000592628 MYO15BQ96JP2 1530 aa29.58■■■□□ 2.33
TCF3-217ENST00000592628 NACADO15069 1562 aa29.49■■■□□ 2.31
TCF3-217ENST00000592628 RB1CC1Q8TDY2 1594 aa29.3■■■□□ 2.28
TCF3-217ENST00000592628 SHROOM4Q9ULL8 1493 aa29.27■■■□□ 2.28
TCF3-217ENST00000592628 SCRIBQ14160 1630 aa29.03■■■□□ 2.24
TCF3-217ENST00000592628 UNC13AQ9UPW8 1703 aa28.75■■■□□ 2.19
TCF3-217ENST00000592628 BICRAQ9NZM4 1560 aa28.45■■■□□ 2.14
TCF3-217ENST00000592628 PABPN1Q86U42 306 aaKnown RBP eCLIP28.37■■■□□ 2.133e-7■□□□□ 8.9
TCF3-217ENST00000592628 CECR2Q9BXF3 1484 aa28.09■■■□□ 2.09
TCF3-217ENST00000592628 SUPT5HO00267 1087 aaKnown RBP28.04■■■□□ 2.08
TCF3-217ENST00000592628 RSF1Q96T23 1441 aaPredicted RBP27.91■■■□□ 2.06
TCF3-217ENST00000592628 MROH2BQ7Z745 1585 aa27.89■■■□□ 2.05
TCF3-217ENST00000592628 BAZ1AQ9NRL2 1556 aaPredicted RBP27.88■■■□□ 2.05
TCF3-217ENST00000592628 SMARCA4P51532 1647 aa27.81■■■□□ 2.04
TCF3-217ENST00000592628 WIZO95785 1651 aa27.66■■■□□ 2.02
TCF3-217ENST00000592628 EIF4G1Q04637 1599 aaKnown RBP27.6■■■□□ 2.01
TCF3-217ENST00000592628 PEG3Q9GZU2 1588 aa27.48■■□□□ 1.99
TCF3-217ENST00000592628 ATAD2BQ9ULI0 1458 aa27.42■■□□□ 1.98
TCF3-217ENST00000592628 SMARCA2P51531 1590 aa27.38■■□□□ 1.97
TCF3-217ENST00000592628 TOP2AP11388 1531 aaKnown RBP27.34■■□□□ 1.97
TCF3-217ENST00000592628 CC2D2AQ9P2K1 1620 aa27.26■■□□□ 1.95
TCF3-217ENST00000592628 BAZ1BQ9UIG0 1483 aaKnown RBP27.23■■□□□ 1.95
TCF3-217ENST00000592628 NCAPD3P42695 1498 aa27.22■■□□□ 1.95
TCF3-217ENST00000592628 HMGXB3Q12766 1538 aa27.15■■□□□ 1.94
TCF3-217ENST00000592628 CCDC88BA6NC98 1476 aa27.07■■□□□ 1.92
TCF3-217ENST00000592628 DNAJC5BQ9UF47 199 aa26.84■■□□□ 1.89
TCF3-217ENST00000592628 CHIC1Q5VXU3 224 aa26.71■■□□□ 1.87
TCF3-217ENST00000592628 CFTRP13569 1480 aa26.55■■□□□ 1.84
TCF3-217ENST00000592628 CADPSQ9ULU8 1353 aa26.51■■□□□ 1.83
TCF3-217ENST00000592628 ABCC8Q09428 1581 aa26.42■■□□□ 1.82
TCF3-217ENST00000592628 PRDM2Q13029 1718 aa26.41■■□□□ 1.82
TCF3-217ENST00000592628 NESP48681 1621 aa26.38■■□□□ 1.81
TCF3-217ENST00000592628 TRIM41Q8WV44 630 aa26.37■■□□□ 1.81
TCF3-217ENST00000592628 LAMC3Q9Y6N6 1575 aa26.34■■□□□ 1.81
TCF3-217ENST00000592628 WRNQ14191 1432 aaPredicted RBP eCLIP26.27■■□□□ 1.8
TCF3-217ENST00000592628 FANCD2Q9BXW9 1451 aa26.21■■□□□ 1.79
TCF3-217ENST00000592628 SYNJ1O43426 1573 aa26.18■■□□□ 1.78
TCF3-217ENST00000592628 PDS5BQ9NTI5 1447 aa26.14■■□□□ 1.77
TCF3-217ENST00000592628 TOP2BQ02880 1626 aa26.09■■□□□ 1.77
TCF3-217ENST00000592628 CUX1P39880 1505 aa26.09■■□□□ 1.77
TCF3-217ENST00000592628 BIVM-ERCC5R4GMW8 1640 aa26.07■■□□□ 1.76
TCF3-217ENST00000592628 CEP164Q9UPV0 1460 aa26.07■■□□□ 1.76
TCF3-217ENST00000592628 KIF21AQ7Z4S6 1674 aa26.06■■□□□ 1.76
TCF3-217ENST00000592628 DNMBPQ6XZF7 1577 aa25.93■■□□□ 1.74
TCF3-217ENST00000592628 URB2Q14146 1524 aaKnown RBP25.91■■□□□ 1.74
TCF3-217ENST00000592628 TOPBP1Q92547 1522 aa25.91■■□□□ 1.74
TCF3-217ENST00000592628 FAM9AQ8IZU1 332 aaPredicted RBP25.9■■□□□ 1.74
TCF3-217ENST00000592628 SOGA1O94964 1423 aa25.87■■□□□ 1.73
TCF3-217ENST00000592628 ERCC6Q03468 1493 aa25.84■■□□□ 1.73
TCF3-217ENST00000592628 FGD5Q6ZNL6 1462 aa25.84■■□□□ 1.73
TCF3-217ENST00000592628 MRC2Q9UBG0 1479 aa25.82■■□□□ 1.72
TCF3-217ENST00000592628 RUSC2Q8N2Y8 1516 aa25.81■■□□□ 1.72
TCF3-217ENST00000592628 POLA1P09884 1462 aaPredicted RBP25.76■■□□□ 1.71
TCF3-217ENST00000592628 EEA1Q15075 1411 aa25.73■■□□□ 1.71
TCF3-217ENST00000592628 WDR62O43379 1518 aa25.7■■□□□ 1.7
TCF3-217ENST00000592628 THOC2Q8NI27 1593 aaKnown RBP25.69■■□□□ 1.7
TCF3-217ENST00000592628 RAD54L2Q9Y4B4 1467 aa25.69■■□□□ 1.7
TCF3-217ENST00000592628 LOC105371045A0A1W2PR82 267 aa25.69■■□□□ 1.7
TCF3-217ENST00000592628 CSRNP3Q8WYN3 585 aa25.65■■□□□ 1.7
TCF3-217ENST00000592628 CUX2O14529 1486 aa25.62■■□□□ 1.69
TCF3-217ENST00000592628 KIF27Q86VH2 1401 aa25.62■■□□□ 1.69
TCF3-217ENST00000592628 ABCA10Q8WWZ4 1543 aa25.6■■□□□ 1.69
TCF3-217ENST00000592628 WDR97A6NE52 1622 aa25.56■■□□□ 1.68
TCF3-217ENST00000592628 TARBP1Q13395 1621 aaKnown RBP25.55■■□□□ 1.68
TCF3-217ENST00000592628 EHMT2Q96KQ7 1210 aa25.54■■□□□ 1.68
TCF3-217ENST00000592628 IFT140Q96RY7 1462 aa25.46■■□□□ 1.67
TCF3-217ENST00000592628 TDRD9Q8NDG6 1382 aaKnown RBP25.46■■□□□ 1.67
TCF3-217ENST00000592628 IGF1RP08069 1367 aa25.44■■□□□ 1.66
TCF3-217ENST00000592628 KIF21BO75037 1637 aa25.43■■□□□ 1.66
TCF3-217ENST00000592628 ABCA5Q8WWZ7 1642 aa25.42■■□□□ 1.66
TCF3-217ENST00000592628 PRXQ9BXM0 1461 aa25.39■■□□□ 1.65
TCF3-217ENST00000592628 GAPVD1Q14C86 1478 aa25.38■■□□□ 1.65
TCF3-217ENST00000592628 GOLGA3Q08378 1498 aa25.38■■□□□ 1.65
TCF3-217ENST00000592628 ZNF608Q9ULD9 1512 aaPredicted RBP25.36■■□□□ 1.65
TCF3-217ENST00000592628 RAPGEF2Q9Y4G8 1499 aa25.35■■□□□ 1.65
TCF3-217ENST00000592628 AQRO60306 1485 aaKnown RBP eCLIP25.34■■□□□ 1.657e-7■■■□□ 18.9
TCF3-217ENST00000592628 CARMIL1Q5VZK9 1371 aa25.3■■□□□ 1.64
TCF3-217ENST00000592628 ERICH3Q5RHP9 1530 aa25.3■■□□□ 1.64
TCF3-217ENST00000592628 UBTFP17480 764 aaKnown RBP25.29■■□□□ 1.64
TCF3-217ENST00000592628 PBRM1Q86U86 1689 aa25.27■■□□□ 1.64
TCF3-217ENST00000592628 TNIKQ9UKE5 1360 aa25.26■■□□□ 1.63
TCF3-217ENST00000592628 CUL7Q14999 1698 aa25.25■■□□□ 1.63
TCF3-217ENST00000592628 EIF4G3O43432 1585 aaKnown RBP25.25■■□□□ 1.63
TCF3-217ENST00000592628 GRIN2BQ13224 1484 aa25.22■■□□□ 1.63
TCF3-217ENST00000592628 ADAMTS12P58397 1594 aa25.1■■□□□ 1.61
TCF3-217ENST00000592628 FHAD1B1AJZ9 1412 aa25.1■■□□□ 1.61
TCF3-217ENST00000592628 SNAPC4Q5SXM2 1469 aa25.09■■□□□ 1.61
TCF3-217ENST00000592628 CEP162Q5TB80 1403 aa25.09■■□□□ 1.61
TCF3-217ENST00000592628 MAGI1Q96QZ7 1491 aaPredicted RBP25.03■■□□□ 1.6
TCF3-217ENST00000592628 RANGAP1P46060 587 aaPredicted RBP24.98■■□□□ 1.59
TCF3-217ENST00000592628 CLIP1P30622 1438 aa24.96■■□□□ 1.59
TCF3-217ENST00000592628 CTTNBP2Q8WZ74 1663 aa24.95■■□□□ 1.59
TCF3-217ENST00000592628 SYNJ2O15056 1496 aa24.94■■□□□ 1.58
TCF3-217ENST00000592628 GRIN2AQ12879 1464 aa24.91■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms