RNA–Protein interactions for RNA: ENST00000592060.5

MBD1-227, Transcript of methyl-CpG binding domain protein 1, humanhuman

TSL 1 (best)

Gene MBD1, Length 1,952 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD1-227ENST00000592060 NISCHQ9Y2I1 1504 aa34.31■■■■□ 3.08
MBD1-227ENST00000592060 CCDC180Q9P1Z9 1646 aa29.62■■■□□ 2.33
MBD1-227ENST00000592060 ZCCHC6Q5VYS8 1495 aaKnown RBP28.98■■■□□ 2.23
MBD1-227ENST00000592060 SHROOM4Q9ULL8 1493 aa28.49■■■□□ 2.15
MBD1-227ENST00000592060 DCAF1Q9Y4B6 1507 aa28.34■■■□□ 2.13
MBD1-227ENST00000592060 DCAF8L2P0C7V8 631 aa28.04■■■□□ 2.08
MBD1-227ENST00000592060 MYO15BQ96JP2 1530 aa27.74■■■□□ 2.03
MBD1-227ENST00000592060 SUPT5HO00267 1087 aaKnown RBP27.67■■■□□ 2.02
MBD1-227ENST00000592060 ABCC9O60706 1549 aa27.44■■□□□ 1.98
MBD1-227ENST00000592060 NACADO15069 1562 aa27.39■■□□□ 1.98
MBD1-227ENST00000592060 SCRIBQ14160 1630 aa27.39■■□□□ 1.97
MBD1-227ENST00000592060 RB1CC1Q8TDY2 1594 aa27.01■■□□□ 1.91
MBD1-227ENST00000592060 RSF1Q96T23 1441 aaPredicted RBP26.88■■□□□ 1.89
MBD1-227ENST00000592060 CHIC1Q5VXU3 224 aa26.85■■□□□ 1.89
MBD1-227ENST00000592060 CECR2Q9BXF3 1484 aa26.66■■□□□ 1.86
MBD1-227ENST00000592060 UNC13AQ9UPW8 1703 aa26.64■■□□□ 1.86
MBD1-227ENST00000592060 MROH2BQ7Z745 1585 aa26.58■■□□□ 1.85
MBD1-227ENST00000592060 WIZO95785 1651 aa26.43■■□□□ 1.82
MBD1-227ENST00000592060 BAZ1AQ9NRL2 1556 aaPredicted RBP26.42■■□□□ 1.82
MBD1-227ENST00000592060 BICRAQ9NZM4 1560 aa26.28■■□□□ 1.8
MBD1-227ENST00000592060 SMARCA4P51532 1647 aa26.27■■□□□ 1.8
MBD1-227ENST00000592060 TOP2AP11388 1531 aaKnown RBP26.11■■□□□ 1.77
MBD1-227ENST00000592060 EIF4G1Q04637 1599 aaKnown RBP26.05■■□□□ 1.76
MBD1-227ENST00000592060 PABPN1Q86U42 306 aaKnown RBP eCLIP25.98■■□□□ 1.75
MBD1-227ENST00000592060 SMARCA2P51531 1590 aa25.92■■□□□ 1.74
MBD1-227ENST00000592060 TRIM41Q8WV44 630 aa25.92■■□□□ 1.74
MBD1-227ENST00000592060 PEG3Q9GZU2 1588 aa25.9■■□□□ 1.74
MBD1-227ENST00000592060 LOC105371045A0A1W2PR82 267 aa25.87■■□□□ 1.73
MBD1-227ENST00000592060 CCDC88BA6NC98 1476 aa25.85■■□□□ 1.73
MBD1-227ENST00000592060 DNAJC5BQ9UF47 199 aa25.69■■□□□ 1.7
MBD1-227ENST00000592060 ATAD2BQ9ULI0 1458 aa25.64■■□□□ 1.7
MBD1-227ENST00000592060 ABCC8Q09428 1581 aa25.58■■□□□ 1.69
MBD1-227ENST00000592060 FAM9AQ8IZU1 332 aaPredicted RBP25.53■■□□□ 1.68
MBD1-227ENST00000592060 BAZ1BQ9UIG0 1483 aaKnown RBP25.52■■□□□ 1.68
MBD1-227ENST00000592060 PCGF6Q9BYE7 350 aa25.35■■□□□ 1.65
MBD1-227ENST00000592060 HMGXB3Q12766 1538 aa25.32■■□□□ 1.64
MBD1-227ENST00000592060 NCAPD3P42695 1498 aa25.27■■□□□ 1.64
MBD1-227ENST00000592060 WRNQ14191 1432 aaPredicted RBP eCLIP25.25■■□□□ 1.63
MBD1-227ENST00000592060 SYNJ1O43426 1573 aa25.21■■□□□ 1.63
MBD1-227ENST00000592060 SOGA1O94964 1423 aa25.2■■□□□ 1.62
MBD1-227ENST00000592060 EEA1Q15075 1411 aa25.19■■□□□ 1.62
MBD1-227ENST00000592060 EHMT2Q96KQ7 1210 aa25.18■■□□□ 1.62
MBD1-227ENST00000592060 HRCP23327 699 aa25.16■■□□□ 1.62
MBD1-227ENST00000592060 TRIM26Q12899 539 aaPredicted RBP25.14■■□□□ 1.61
MBD1-227ENST00000592060 RUSC2Q8N2Y8 1516 aa25.1■■□□□ 1.61
MBD1-227ENST00000592060 TOP2BQ02880 1626 aa25.01■■□□□ 1.59
MBD1-227ENST00000592060 BIVM-ERCC5R4GMW8 1640 aa25■■□□□ 1.59
MBD1-227ENST00000592060 CSRNP3Q8WYN3 585 aa24.98■■□□□ 1.59
MBD1-227ENST00000592060 TNIKQ9UKE5 1360 aa24.95■■□□□ 1.58
MBD1-227ENST00000592060 CFTRP13569 1480 aa24.92■■□□□ 1.58
MBD1-227ENST00000592060 GOLGA3Q08378 1498 aa24.92■■□□□ 1.58
MBD1-227ENST00000592060 KIF21BO75037 1637 aa24.92■■□□□ 1.58
MBD1-227ENST00000592060 PRDM2Q13029 1718 aa24.91■■□□□ 1.58
MBD1-227ENST00000592060 CEP162Q5TB80 1403 aa24.91■■□□□ 1.58
MBD1-227ENST00000592060 CC2D2AQ9P2K1 1620 aa24.86■■□□□ 1.57
MBD1-227ENST00000592060 CEP164Q9UPV0 1460 aa24.84■■□□□ 1.57
MBD1-227ENST00000592060 CUX1P39880 1505 aa24.81■■□□□ 1.56
MBD1-227ENST00000592060 UBTFP17480 764 aaKnown RBP24.71■■□□□ 1.55
MBD1-227ENST00000592060 CADPSQ9ULU8 1353 aa24.66■■□□□ 1.54
MBD1-227ENST00000592060 RAPGEF2Q9Y4G8 1499 aa24.65■■□□□ 1.54
MBD1-227ENST00000592060 PPARGC1BQ86YN6 1023 aaKnown RBP24.61■■□□□ 1.53
MBD1-227ENST00000592060 ERICH3Q5RHP9 1530 aa24.6■■□□□ 1.53
MBD1-227ENST00000592060 PRXQ9BXM0 1461 aa24.58■■□□□ 1.52
MBD1-227ENST00000592060 CLIP1P30622 1438 aa24.54■■□□□ 1.52
MBD1-227ENST00000592060 KIF27Q86VH2 1401 aa24.52■■□□□ 1.52
MBD1-227ENST00000592060 FANCD2Q9BXW9 1451 aa24.43■■□□□ 1.5
MBD1-227ENST00000592060 VPS8Q8N3P4 1428 aa24.43■■□□□ 1.5
MBD1-227ENST00000592060 ZEB1P37275 1124 aaPredicted RBP24.42■■□□□ 1.5
MBD1-227ENST00000592060 FGD5Q6ZNL6 1462 aa24.41■■□□□ 1.5
MBD1-227ENST00000592060 CUX2O14529 1486 aa24.35■■□□□ 1.49
MBD1-227ENST00000592060 DNMBPQ6XZF7 1577 aa24.35■■□□□ 1.49
MBD1-227ENST00000592060 NESP48681 1621 aa24.33■■□□□ 1.49
MBD1-227ENST00000592060 LAMC3Q9Y6N6 1575 aa24.32■■□□□ 1.48
MBD1-227ENST00000592060 ARAP1Q96P48 1450 aa24.29■■□□□ 1.48
MBD1-227ENST00000592060 TTBK1Q5TCY1 1321 aaPredicted RBP24.28■■□□□ 1.48
MBD1-227ENST00000592060 IGF1RP08069 1367 aa24.26■■□□□ 1.47
MBD1-227ENST00000592060 TOPBP1Q92547 1522 aa24.26■■□□□ 1.47
MBD1-227ENST00000592060 POLA1P09884 1462 aaPredicted RBP24.2■■□□□ 1.46
MBD1-227ENST00000592060 ABCA10Q8WWZ4 1543 aa24.19■■□□□ 1.46
MBD1-227ENST00000592060 RANGAP1P46060 587 aaPredicted RBP24.16■■□□□ 1.46
MBD1-227ENST00000592060 WDR97A6NE52 1622 aa24.14■■□□□ 1.46
MBD1-227ENST00000592060 RAD54L2Q9Y4B4 1467 aa24.14■■□□□ 1.46
MBD1-227ENST00000592060 URB2Q14146 1524 aaKnown RBP24.14■■□□□ 1.45
MBD1-227ENST00000592060 CARMIL1Q5VZK9 1371 aa24.14■■□□□ 1.45
MBD1-227ENST00000592060 ARHGAP35Q9NRY4 1499 aa24.14■■□□□ 1.45
MBD1-227ENST00000592060 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.11■■□□□ 1.45
MBD1-227ENST00000592060 KIF21AQ7Z4S6 1674 aa24.07■■□□□ 1.44
MBD1-227ENST00000592060 APLP2Q06481 763 aa24.07■■□□□ 1.44
MBD1-227ENST00000592060 PDS5BQ9NTI5 1447 aa24.06■■□□□ 1.44
MBD1-227ENST00000592060 CUL7Q14999 1698 aa24.05■■□□□ 1.44
MBD1-227ENST00000592060 CCER1Q8TC90 406 aaPredicted RBP24.03■■□□□ 1.44
MBD1-227ENST00000592060 ABCA5Q8WWZ7 1642 aa23.99■■□□□ 1.43
MBD1-227ENST00000592060 DNAJC5Q9H3Z4 198 aa23.94■■□□□ 1.42
MBD1-227ENST00000592060 CTTNBP2Q8WZ74 1663 aa23.93■■□□□ 1.42
MBD1-227ENST00000592060 KANK4Q5T7N3 995 aaPredicted RBP23.88■■□□□ 1.41
MBD1-227ENST00000592060 TARBP1Q13395 1621 aaKnown RBP23.88■■□□□ 1.41
MBD1-227ENST00000592060 MAP3K1Q13233 1512 aa23.87■■□□□ 1.41
MBD1-227ENST00000592060 TIAM1Q13009 1591 aa23.85■■□□□ 1.41
MBD1-227ENST00000592060 EFCAB5A4FU69 1503 aa23.84■■□□□ 1.41
MBD1-227ENST00000592060 GAPVD1Q14C86 1478 aa23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms