RNA–Protein interactions for RNA: ENST00000591309.5

ERCC2-212, Transcript of ERCC excision repair 2, TFIIH core complex helicase subunit, humanhuman

TSL 4

Gene ERCC2, Length 557 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC2-212ENST00000591309 NISCHQ9Y2I1 1504 aa49.81■■■■■ 5.56
ERCC2-212ENST00000591309 CCDC180Q9P1Z9 1646 aa44.25■■■■■ 4.67
ERCC2-212ENST00000591309 ABCC9O60706 1549 aa43.38■■■■■ 4.54
ERCC2-212ENST00000591309 DCAF8L2P0C7V8 631 aa41.87■■■■■ 4.29
ERCC2-212ENST00000591309 RB1CC1Q8TDY2 1594 aa41.73■■■■■ 4.27
ERCC2-212ENST00000591309 NACADO15069 1562 aa41.66■■■■■ 4.26
ERCC2-212ENST00000591309 ZCCHC6Q5VYS8 1495 aaKnown RBP41.47■■■■■ 4.23
ERCC2-212ENST00000591309 MYO15BQ96JP2 1530 aa41.36■■■■■ 4.21
ERCC2-212ENST00000591309 DCAF1Q9Y4B6 1507 aa41.18■■■■■ 4.18
ERCC2-212ENST00000591309 UNC13AQ9UPW8 1703 aa40.64■■■■■ 4.1
ERCC2-212ENST00000591309 PABPN1Q86U42 306 aaKnown RBP eCLIP40.59■■■■■ 4.09
ERCC2-212ENST00000591309 SCRIBQ14160 1630 aa40.42■■■■■ 4.06
ERCC2-212ENST00000591309 BICRAQ9NZM4 1560 aa40.34■■■■■ 4.05
ERCC2-212ENST00000591309 SHROOM4Q9ULL8 1493 aa40■■■■□ 3.99
ERCC2-212ENST00000591309 DNAJC5BQ9UF47 199 aa39.74■■■■□ 3.95
ERCC2-212ENST00000591309 EIF4G1Q04637 1599 aaKnown RBP39.35■■■■□ 3.89
ERCC2-212ENST00000591309 CC2D2AQ9P2K1 1620 aa39.19■■■■□ 3.86
ERCC2-212ENST00000591309 CECR2Q9BXF3 1484 aa38.98■■■■□ 3.83
ERCC2-212ENST00000591309 BAZ1AQ9NRL2 1556 aaPredicted RBP38.65■■■■□ 3.78
ERCC2-212ENST00000591309 SMARCA4P51532 1647 aa38.64■■■■□ 3.78
ERCC2-212ENST00000591309 ATAD2BQ9ULI0 1458 aa38.45■■■■□ 3.75
ERCC2-212ENST00000591309 SMARCA2P51531 1590 aa38.44■■■■□ 3.74
ERCC2-212ENST00000591309 NCAPD3P42695 1498 aa38.43■■■■□ 3.74
ERCC2-212ENST00000591309 MROH2BQ7Z745 1585 aa38.37■■■■□ 3.73
ERCC2-212ENST00000591309 HMGXB3Q12766 1538 aa38.22■■■■□ 3.71
ERCC2-212ENST00000591309 PEG3Q9GZU2 1588 aa38.22■■■■□ 3.71
ERCC2-212ENST00000591309 BAZ1BQ9UIG0 1483 aaKnown RBP38.19■■■■□ 3.7
ERCC2-212ENST00000591309 RSF1Q96T23 1441 aaPredicted RBP37.96■■■■□ 3.67
ERCC2-212ENST00000591309 WIZO95785 1651 aa37.96■■■■□ 3.67
ERCC2-212ENST00000591309 TOP2AP11388 1531 aaKnown RBP37.58■■■■□ 3.61
ERCC2-212ENST00000591309 NESP48681 1621 aa37.49■■■■□ 3.59
ERCC2-212ENST00000591309 ERCC6Q03468 1493 aa37.47■■■■□ 3.59
ERCC2-212ENST00000591309 LAMC3Q9Y6N6 1575 aa37.42■■■■□ 3.58
ERCC2-212ENST00000591309 CADPSQ9ULU8 1353 aa37.36■■■■□ 3.57
ERCC2-212ENST00000591309 PDS5BQ9NTI5 1447 aa37.26■■■■□ 3.55
ERCC2-212ENST00000591309 SUPT5HO00267 1087 aaKnown RBP37.19■■■■□ 3.54
ERCC2-212ENST00000591309 CCDC88BA6NC98 1476 aa37.15■■■■□ 3.54
ERCC2-212ENST00000591309 CFTRP13569 1480 aa37.09■■■■□ 3.53
ERCC2-212ENST00000591309 KIF21AQ7Z4S6 1674 aa37.02■■■■□ 3.52
ERCC2-212ENST00000591309 CUX2O14529 1486 aa37■■■■□ 3.51
ERCC2-212ENST00000591309 FANCD2Q9BXW9 1451 aa36.92■■■■□ 3.5
ERCC2-212ENST00000591309 CEP164Q9UPV0 1460 aa36.89■■■■□ 3.5
ERCC2-212ENST00000591309 THOC2Q8NI27 1593 aaKnown RBP36.87■■■■□ 3.49
ERCC2-212ENST00000591309 MRC2Q9UBG0 1479 aa36.82■■■■□ 3.48
ERCC2-212ENST00000591309 PRDM2Q13029 1718 aa36.76■■■■□ 3.47
ERCC2-212ENST00000591309 WDR62O43379 1518 aa36.64■■■■□ 3.46
ERCC2-212ENST00000591309 URB2Q14146 1524 aaKnown RBP36.49■■■■□ 3.43
ERCC2-212ENST00000591309 ABCC8Q09428 1581 aa36.37■■■■□ 3.41
ERCC2-212ENST00000591309 TOPBP1Q92547 1522 aa36.3■■■■□ 3.4
ERCC2-212ENST00000591309 DNMBPQ6XZF7 1577 aa36.27■■■■□ 3.4
ERCC2-212ENST00000591309 IFT140Q96RY7 1462 aa36.11■■■■□ 3.37
ERCC2-212ENST00000591309 CUX1P39880 1505 aa36■■■■□ 3.35
ERCC2-212ENST00000591309 POLA1P09884 1462 aaPredicted RBP35.99■■■■□ 3.35
ERCC2-212ENST00000591309 FGD5Q6ZNL6 1462 aa35.92■■■■□ 3.34
ERCC2-212ENST00000591309 SOGA1O94964 1423 aa35.92■■■■□ 3.34
ERCC2-212ENST00000591309 ZNF608Q9ULD9 1512 aaPredicted RBP35.88■■■■□ 3.33
ERCC2-212ENST00000591309 DNAJC5Q9H3Z4 198 aa35.87■■■■□ 3.33
ERCC2-212ENST00000591309 WRNQ14191 1432 aaPredicted RBP eCLIP35.86■■■■□ 3.33
ERCC2-212ENST00000591309 RAD54L2Q9Y4B4 1467 aa35.86■■■■□ 3.33
ERCC2-212ENST00000591309 TARBP1Q13395 1621 aaKnown RBP35.84■■■■□ 3.33
ERCC2-212ENST00000591309 AQRO60306 1485 aaKnown RBP eCLIP35.74■■■■□ 3.317e-11■■■■■ 54.3
ERCC2-212ENST00000591309 EIF4G3O43432 1585 aaKnown RBP35.74■■■■□ 3.31
ERCC2-212ENST00000591309 TDRD9Q8NDG6 1382 aaKnown RBP35.71■■■■□ 3.31
ERCC2-212ENST00000591309 TOP2BQ02880 1626 aa35.71■■■■□ 3.31
ERCC2-212ENST00000591309 BIVM-ERCC5R4GMW8 1640 aa35.68■■■■□ 3.3
ERCC2-212ENST00000591309 SYNJ1O43426 1573 aa35.67■■■■□ 3.3
ERCC2-212ENST00000591309 WDR97A6NE52 1622 aa35.62■■■■□ 3.29
ERCC2-212ENST00000591309 OSCARQ8IYS5 282 aa35.57■■■■□ 3.28
ERCC2-212ENST00000591309 ABCA10Q8WWZ4 1543 aa35.56■■■■□ 3.28
ERCC2-212ENST00000591309 GRIN2BQ13224 1484 aa35.48■■■■□ 3.27
ERCC2-212ENST00000591309 GAPVD1Q14C86 1478 aa35.48■■■■□ 3.27
ERCC2-212ENST00000591309 FBLN2P98095 1184 aa35.47■■■■□ 3.27
ERCC2-212ENST00000591309 SNAPC4Q5SXM2 1469 aa35.41■■■■□ 3.26
ERCC2-212ENST00000591309 ABCA5Q8WWZ7 1642 aa35.37■■■■□ 3.25
ERCC2-212ENST00000591309 MAGI1Q96QZ7 1491 aaPredicted RBP35.36■■■■□ 3.25
ERCC2-212ENST00000591309 CHMP7Q8WUX9 453 aaPredicted RBP35.35■■■■□ 3.25
ERCC2-212ENST00000591309 PBRM1Q86U86 1689 aa35.33■■■■□ 3.25
ERCC2-212ENST00000591309 CHD1O14646 1710 aa35.29■■■■□ 3.24
ERCC2-212ENST00000591309 SYNJ2O15056 1496 aa35.23■■■■□ 3.23
ERCC2-212ENST00000591309 ERICH3Q5RHP9 1530 aa35.15■■■■□ 3.22
ERCC2-212ENST00000591309 KIF27Q86VH2 1401 aa35.15■■■■□ 3.22
ERCC2-212ENST00000591309 TRIM41Q8WV44 630 aa35.14■■■■□ 3.22
ERCC2-212ENST00000591309 FHAD1B1AJZ9 1412 aa35.08■■■■□ 3.21
ERCC2-212ENST00000591309 ADAMTS12P58397 1594 aa35.06■■■■□ 3.2
ERCC2-212ENST00000591309 GRIN2AQ12879 1464 aa34.99■■■■□ 3.19
ERCC2-212ENST00000591309 IGF1RP08069 1367 aa34.94■■■■□ 3.18
ERCC2-212ENST00000591309 CLASP1Q7Z460 1538 aa34.88■■■■□ 3.17
ERCC2-212ENST00000591309 ARHGEF11O15085 1522 aa34.86■■■■□ 3.17
ERCC2-212ENST00000591309 RIMBP3CA6NJZ7 1639 aa34.84■■■■□ 3.17
ERCC2-212ENST00000591309 RIMBP3BA6NNM3 1639 aa34.84■■■■□ 3.17
ERCC2-212ENST00000591309 RIMBP3Q9UFD9 1639 aa34.84■■■■□ 3.17
ERCC2-212ENST00000591309 CUL7Q14999 1698 aa34.83■■■■□ 3.17
ERCC2-212ENST00000591309 NUP160Q12769 1436 aa34.81■■■■□ 3.16
ERCC2-212ENST00000591309 CARMIL1Q5VZK9 1371 aa34.79■■■■□ 3.16
ERCC2-212ENST00000591309 CEP170Q5SW79 1584 aa34.76■■■■□ 3.16
ERCC2-212ENST00000591309 RUSC2Q8N2Y8 1516 aa34.72■■■■□ 3.15
ERCC2-212ENST00000591309 CYB5RLQ6IPT4 315 aa34.67■■■■□ 3.14
ERCC2-212ENST00000591309 CHIC1Q5VXU3 224 aa34.63■■■■□ 3.13
ERCC2-212ENST00000591309 RAPGEF2Q9Y4G8 1499 aa34.57■■■■□ 3.12
ERCC2-212ENST00000591309 JPH4Q96JJ6 628 aa34.56■■■■□ 3.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms