RNA–Protein interactions for RNA: ENST00000590530.5

GCDH-212, Transcript of glutaryl-CoA dehydrogenase, humanhuman

TSL 2

Gene GCDH, Length 1,871 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCDH-212ENST00000590530 NISCHQ9Y2I1 1504 aa39.12■■■■□ 3.85
GCDH-212ENST00000590530 CCDC180Q9P1Z9 1646 aa34.13■■■■□ 3.05
GCDH-212ENST00000590530 ABCC9O60706 1549 aa32.8■■■□□ 2.84
GCDH-212ENST00000590530 ZCCHC6Q5VYS8 1495 aaKnown RBP32.79■■■□□ 2.84
GCDH-212ENST00000590530 DCAF8L2P0C7V8 631 aa32.57■■■□□ 2.8
GCDH-212ENST00000590530 DCAF1Q9Y4B6 1507 aa32.24■■■□□ 2.75
GCDH-212ENST00000590530 MYO15BQ96JP2 1530 aa31.96■■■□□ 2.71
GCDH-212ENST00000590530 NACADO15069 1562 aa31.91■■■□□ 2.7
GCDH-212ENST00000590530 SHROOM4Q9ULL8 1493 aa31.86■■■□□ 2.69
GCDH-212ENST00000590530 RB1CC1Q8TDY2 1594 aa31.72■■■□□ 2.67
GCDH-212ENST00000590530 SCRIBQ14160 1630 aa31.51■■■□□ 2.63
GCDH-212ENST00000590530 UNC13AQ9UPW8 1703 aa31.11■■■□□ 2.57
GCDH-212ENST00000590530 PABPN1Q86U42 306 aaKnown RBP eCLIP30.95■■■□□ 2.55
GCDH-212ENST00000590530 BICRAQ9NZM4 1560 aa30.89■■■□□ 2.54
GCDH-212ENST00000590530 CECR2Q9BXF3 1484 aa30.55■■■□□ 2.48
GCDH-212ENST00000590530 SUPT5HO00267 1087 aaKnown RBP30.45■■■□□ 2.47
GCDH-212ENST00000590530 MROH2BQ7Z745 1585 aa30.28■■■□□ 2.44
GCDH-212ENST00000590530 RSF1Q96T23 1441 aaPredicted RBP30.28■■■□□ 2.44
GCDH-212ENST00000590530 BAZ1AQ9NRL2 1556 aaPredicted RBP30.17■■■□□ 2.42
GCDH-212ENST00000590530 SMARCA4P51532 1647 aa30.12■■■□□ 2.41
GCDH-212ENST00000590530 WIZO95785 1651 aa29.99■■■□□ 2.39
GCDH-212ENST00000590530 EIF4G1Q04637 1599 aaKnown RBP29.95■■■□□ 2.38
GCDH-212ENST00000590530 ATAD2BQ9ULI0 1458 aa29.76■■■□□ 2.35
GCDH-212ENST00000590530 PEG3Q9GZU2 1588 aa29.72■■■□□ 2.35
GCDH-212ENST00000590530 SMARCA2P51531 1590 aa29.63■■■□□ 2.33
GCDH-212ENST00000590530 CC2D2AQ9P2K1 1620 aa29.61■■■□□ 2.33
GCDH-212ENST00000590530 TOP2AP11388 1531 aaKnown RBP29.6■■■□□ 2.33
GCDH-212ENST00000590530 BAZ1BQ9UIG0 1483 aaKnown RBP29.53■■■□□ 2.32
GCDH-212ENST00000590530 NCAPD3P42695 1498 aa29.53■■■□□ 2.32
GCDH-212ENST00000590530 HMGXB3Q12766 1538 aa29.39■■■□□ 2.3
GCDH-212ENST00000590530 DNAJC5BQ9UF47 199 aa29.38■■■□□ 2.29
GCDH-212ENST00000590530 CCDC88BA6NC98 1476 aa29.37■■■□□ 2.29
GCDH-212ENST00000590530 CHIC1Q5VXU3 224 aa28.94■■■□□ 2.22
GCDH-212ENST00000590530 CFTRP13569 1480 aa28.78■■■□□ 2.2
GCDH-212ENST00000590530 CADPSQ9ULU8 1353 aa28.77■■■□□ 2.2
GCDH-212ENST00000590530 NESP48681 1621 aa28.73■■■□□ 2.19
GCDH-212ENST00000590530 ABCC8Q09428 1581 aa28.67■■■□□ 2.18
GCDH-212ENST00000590530 TRIM41Q8WV44 630 aa28.57■■■□□ 2.16
GCDH-212ENST00000590530 LAMC3Q9Y6N6 1575 aa28.51■■■□□ 2.15
GCDH-212ENST00000590530 WRNQ14191 1432 aaPredicted RBP eCLIP28.46■■■□□ 2.15
GCDH-212ENST00000590530 FANCD2Q9BXW9 1451 aa28.46■■■□□ 2.15
GCDH-212ENST00000590530 PRDM2Q13029 1718 aa28.45■■■□□ 2.15
GCDH-212ENST00000590530 SYNJ1O43426 1573 aa28.39■■■□□ 2.14
GCDH-212ENST00000590530 PDS5BQ9NTI5 1447 aa28.33■■■□□ 2.13
GCDH-212ENST00000590530 CUX1P39880 1505 aa28.31■■■□□ 2.12
GCDH-212ENST00000590530 CEP164Q9UPV0 1460 aa28.27■■■□□ 2.12
GCDH-212ENST00000590530 KIF21AQ7Z4S6 1674 aa28.25■■■□□ 2.11
GCDH-212ENST00000590530 TOP2BQ02880 1626 aa28.22■■■□□ 2.11
GCDH-212ENST00000590530 BIVM-ERCC5R4GMW8 1640 aa28.18■■■□□ 2.1
GCDH-212ENST00000590530 FAM9AQ8IZU1 332 aaPredicted RBP28.16■■■□□ 2.1
GCDH-212ENST00000590530 URB2Q14146 1524 aaKnown RBP28.15■■■□□ 2.1
GCDH-212ENST00000590530 TOPBP1Q92547 1522 aa28.11■■■□□ 2.09
GCDH-212ENST00000590530 SOGA1O94964 1423 aa28.1■■■□□ 2.09
GCDH-212ENST00000590530 ERCC6Q03468 1493 aa28.08■■■□□ 2.09
GCDH-212ENST00000590530 DNMBPQ6XZF7 1577 aa28.07■■■□□ 2.08
GCDH-212ENST00000590530 RUSC2Q8N2Y8 1516 aa28.05■■■□□ 2.08
GCDH-212ENST00000590530 FGD5Q6ZNL6 1462 aa28.04■■■□□ 2.08
GCDH-212ENST00000590530 MRC2Q9UBG0 1479 aa28.01■■■□□ 2.08
GCDH-212ENST00000590530 POLA1P09884 1462 aaPredicted RBP27.96■■■□□ 2.07
GCDH-212ENST00000590530 RAD54L2Q9Y4B4 1467 aa27.94■■■□□ 2.06
GCDH-212ENST00000590530 LOC105371045A0A1W2PR82 267 aa27.91■■■□□ 2.06
GCDH-212ENST00000590530 THOC2Q8NI27 1593 aaKnown RBP27.88■■■□□ 2.05
GCDH-212ENST00000590530 WDR62O43379 1518 aa27.87■■■□□ 2.05
GCDH-212ENST00000590530 EHMT2Q96KQ7 1210 aa27.85■■■□□ 2.05
GCDH-212ENST00000590530 CUX2O14529 1486 aa27.8■■■□□ 2.04
GCDH-212ENST00000590530 CSRNP3Q8WYN3 585 aa27.79■■■□□ 2.04
GCDH-212ENST00000590530 EEA1Q15075 1411 aa27.76■■■□□ 2.03
GCDH-212ENST00000590530 ABCA10Q8WWZ4 1543 aa27.74■■■□□ 2.03
GCDH-212ENST00000590530 KIF27Q86VH2 1401 aa27.74■■■□□ 2.03
GCDH-212ENST00000590530 TDRD9Q8NDG6 1382 aaKnown RBP27.7■■■□□ 2.02
GCDH-212ENST00000590530 TARBP1Q13395 1621 aaKnown RBP27.7■■■□□ 2.02
GCDH-212ENST00000590530 WDR97A6NE52 1622 aa27.65■■■□□ 2.02
GCDH-212ENST00000590530 IGF1RP08069 1367 aa27.62■■■□□ 2.01
GCDH-212ENST00000590530 IFT140Q96RY7 1462 aa27.6■■■□□ 2.01
GCDH-212ENST00000590530 ZNF608Q9ULD9 1512 aaPredicted RBP27.6■■■□□ 2.01
GCDH-212ENST00000590530 AQRO60306 1485 aaKnown RBP eCLIP27.57■■■□□ 21e-6■■■■■ 36.8
GCDH-212ENST00000590530 ABCA5Q8WWZ7 1642 aa27.54■■■□□ 2
GCDH-212ENST00000590530 GAPVD1Q14C86 1478 aa27.53■■■□□ 2
GCDH-212ENST00000590530 PRXQ9BXM0 1461 aa27.51■■□□□ 1.99
GCDH-212ENST00000590530 RAPGEF2Q9Y4G8 1499 aa27.5■■□□□ 1.99
GCDH-212ENST00000590530 KIF21BO75037 1637 aa27.46■■□□□ 1.99
GCDH-212ENST00000590530 GOLGA3Q08378 1498 aa27.44■■□□□ 1.98
GCDH-212ENST00000590530 CARMIL1Q5VZK9 1371 aa27.44■■□□□ 1.98
GCDH-212ENST00000590530 UBTFP17480 764 aaKnown RBP27.42■■□□□ 1.98
GCDH-212ENST00000590530 EIF4G3O43432 1585 aaKnown RBP27.39■■□□□ 1.97
GCDH-212ENST00000590530 ERICH3Q5RHP9 1530 aa27.37■■□□□ 1.97
GCDH-212ENST00000590530 GRIN2BQ13224 1484 aa27.34■■□□□ 1.97
GCDH-212ENST00000590530 PBRM1Q86U86 1689 aa27.33■■□□□ 1.97
GCDH-212ENST00000590530 TNIKQ9UKE5 1360 aa27.31■■□□□ 1.96
GCDH-212ENST00000590530 CUL7Q14999 1698 aa27.27■■□□□ 1.96
GCDH-212ENST00000590530 SNAPC4Q5SXM2 1469 aa27.26■■□□□ 1.95
GCDH-212ENST00000590530 RANGAP1P46060 587 aaPredicted RBP27.21■■□□□ 1.95
GCDH-212ENST00000590530 ADAMTS12P58397 1594 aa27.2■■□□□ 1.95
GCDH-212ENST00000590530 FHAD1B1AJZ9 1412 aa27.2■■□□□ 1.95
GCDH-212ENST00000590530 CEP162Q5TB80 1403 aa27.17■■□□□ 1.94
GCDH-212ENST00000590530 MAGI1Q96QZ7 1491 aaPredicted RBP27.12■■□□□ 1.93
GCDH-212ENST00000590530 FBLN2P98095 1184 aa27.08■■□□□ 1.93
GCDH-212ENST00000590530 CHMP7Q8WUX9 453 aaPredicted RBP27.05■■□□□ 1.92
GCDH-212ENST00000590530 SYNJ2O15056 1496 aa27.04■■□□□ 1.92
GCDH-212ENST00000590530 CLIP1P30622 1438 aa27.03■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms