RNA–Protein interactions for RNA: ENST00000590315.5

DDX39A-213, Transcript of DExD-box helicase 39A, humanhuman

TSL 5

Gene DDX39A, Length 566 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-213ENST00000590315 NISCHQ9Y2I1 1504 aa30.6■■■□□ 2.49
DDX39A-213ENST00000590315 CCDC180Q9P1Z9 1646 aa27.21■■□□□ 1.95
DDX39A-213ENST00000590315 ABCC9O60706 1549 aa26.29■■□□□ 1.8
DDX39A-213ENST00000590315 ZCCHC6Q5VYS8 1495 aaKnown RBP25.56■■□□□ 1.68
DDX39A-213ENST00000590315 DCAF8L2P0C7V8 631 aa25.55■■□□□ 1.68
DDX39A-213ENST00000590315 RB1CC1Q8TDY2 1594 aa25.43■■□□□ 1.66
DDX39A-213ENST00000590315 NACADO15069 1562 aa25.41■■□□□ 1.66
DDX39A-213ENST00000590315 DCAF1Q9Y4B6 1507 aa25.27■■□□□ 1.64
DDX39A-213ENST00000590315 MYO15BQ96JP2 1530 aa25.24■■□□□ 1.63
DDX39A-213ENST00000590315 UNC13AQ9UPW8 1703 aa25■■□□□ 1.59
DDX39A-213ENST00000590315 SCRIBQ14160 1630 aa24.9■■□□□ 1.58
DDX39A-213ENST00000590315 BICRAQ9NZM4 1560 aa24.59■■□□□ 1.53
DDX39A-213ENST00000590315 PABPN1Q86U42 306 aaKnown RBP eCLIP24.55■■□□□ 1.52
DDX39A-213ENST00000590315 SHROOM4Q9ULL8 1493 aa24.48■■□□□ 1.51
DDX39A-213ENST00000590315 EIF4G1Q04637 1599 aaKnown RBP23.95■■□□□ 1.42
DDX39A-213ENST00000590315 CC2D2AQ9P2K1 1620 aa23.81■■□□□ 1.4
DDX39A-213ENST00000590315 CECR2Q9BXF3 1484 aa23.8■■□□□ 1.4
DDX39A-213ENST00000590315 SMARCA4P51532 1647 aa23.77■■□□□ 1.4
DDX39A-213ENST00000590315 BAZ1AQ9NRL2 1556 aaPredicted RBP23.75■■□□□ 1.39
DDX39A-213ENST00000590315 DNAJC5BQ9UF47 199 aa23.68■■□□□ 1.38
DDX39A-213ENST00000590315 MROH2BQ7Z745 1585 aa23.61■■□□□ 1.37
DDX39A-213ENST00000590315 SMARCA2P51531 1590 aa23.52■■□□□ 1.36
DDX39A-213ENST00000590315 WIZO95785 1651 aa23.48■■□□□ 1.35
DDX39A-213ENST00000590315 ATAD2BQ9ULI0 1458 aa23.45■■□□□ 1.34
DDX39A-213ENST00000590315 PEG3Q9GZU2 1588 aa23.43■■□□□ 1.34
DDX39A-213ENST00000590315 RSF1Q96T23 1441 aaPredicted RBP23.38■■□□□ 1.33
DDX39A-213ENST00000590315 BAZ1BQ9UIG0 1483 aaKnown RBP23.36■■□□□ 1.33
DDX39A-213ENST00000590315 HMGXB3Q12766 1538 aa23.36■■□□□ 1.33
DDX39A-213ENST00000590315 NCAPD3P42695 1498 aa23.34■■□□□ 1.33
DDX39A-213ENST00000590315 TOP2AP11388 1531 aaKnown RBP23.18■■□□□ 1.3
DDX39A-213ENST00000590315 SUPT5HO00267 1087 aaKnown RBP23.14■■□□□ 1.29
DDX39A-213ENST00000590315 CCDC88BA6NC98 1476 aa22.85■■□□□ 1.25
DDX39A-213ENST00000590315 LAMC3Q9Y6N6 1575 aa22.82■■□□□ 1.24
DDX39A-213ENST00000590315 NESP48681 1621 aa22.82■■□□□ 1.24
DDX39A-213ENST00000590315 PRDM2Q13029 1718 aa22.79■■□□□ 1.24
DDX39A-213ENST00000590315 KIF21AQ7Z4S6 1674 aa22.71■■□□□ 1.23
DDX39A-213ENST00000590315 CADPSQ9ULU8 1353 aa22.7■■□□□ 1.22
DDX39A-213ENST00000590315 ERCC6Q03468 1493 aa22.67■■□□□ 1.22
DDX39A-213ENST00000590315 CFTRP13569 1480 aa22.64■■□□□ 1.21
DDX39A-213ENST00000590315 PDS5BQ9NTI5 1447 aa22.59■■□□□ 1.21
DDX39A-213ENST00000590315 FANCD2Q9BXW9 1451 aa22.52■■□□□ 1.2
DDX39A-213ENST00000590315 CEP164Q9UPV0 1460 aa22.51■■□□□ 1.19
DDX39A-213ENST00000590315 THOC2Q8NI27 1593 aaKnown RBP22.45■■□□□ 1.18
DDX39A-213ENST00000590315 MRC2Q9UBG0 1479 aa22.39■■□□□ 1.17
DDX39A-213ENST00000590315 WDR62O43379 1518 aa22.29■■□□□ 1.16
DDX39A-213ENST00000590315 URB2Q14146 1524 aaKnown RBP22.27■■□□□ 1.16
DDX39A-213ENST00000590315 DNMBPQ6XZF7 1577 aa22.25■■□□□ 1.15
DDX39A-213ENST00000590315 CUX2O14529 1486 aa22.22■■□□□ 1.15
DDX39A-213ENST00000590315 ABCC8Q09428 1581 aa22.22■■□□□ 1.15
DDX39A-213ENST00000590315 TOPBP1Q92547 1522 aa22.2■■□□□ 1.14
DDX39A-213ENST00000590315 CUX1P39880 1505 aa22.16■■□□□ 1.14
DDX39A-213ENST00000590315 BIVM-ERCC5R4GMW8 1640 aa22.11■■□□□ 1.13
DDX39A-213ENST00000590315 SYNJ1O43426 1573 aa22.1■■□□□ 1.13
DDX39A-213ENST00000590315 WRNQ14191 1432 aaPredicted RBP eCLIP22.1■■□□□ 1.132e-9■■■■■ 39.4
DDX39A-213ENST00000590315 TOP2BQ02880 1626 aa22.07■■□□□ 1.12
DDX39A-213ENST00000590315 FGD5Q6ZNL6 1462 aa22.05■■□□□ 1.12
DDX39A-213ENST00000590315 POLA1P09884 1462 aaPredicted RBP22.02■■□□□ 1.12
DDX39A-213ENST00000590315 IFT140Q96RY7 1462 aa21.96■■□□□ 1.11
DDX39A-213ENST00000590315 TARBP1Q13395 1621 aaKnown RBP21.95■■□□□ 1.1
DDX39A-213ENST00000590315 RAD54L2Q9Y4B4 1467 aa21.94■■□□□ 1.1
DDX39A-213ENST00000590315 WDR97A6NE52 1622 aa21.94■■□□□ 1.1
DDX39A-213ENST00000590315 SOGA1O94964 1423 aa21.92■■□□□ 1.1
DDX39A-213ENST00000590315 EIF4G3O43432 1585 aaKnown RBP21.89■■□□□ 1.09
DDX39A-213ENST00000590315 ZNF608Q9ULD9 1512 aaPredicted RBP21.85■■□□□ 1.09
DDX39A-213ENST00000590315 PBRM1Q86U86 1689 aa21.82■■□□□ 1.08
DDX39A-213ENST00000590315 TRIM41Q8WV44 630 aa21.8■■□□□ 1.08
DDX39A-213ENST00000590315 ABCA10Q8WWZ4 1543 aa21.79■■□□□ 1.08
DDX39A-213ENST00000590315 ABCA5Q8WWZ7 1642 aa21.76■■□□□ 1.07
DDX39A-213ENST00000590315 AQRO60306 1485 aaKnown RBP eCLIP21.76■■□□□ 1.071e-7■■■■■ 36.4
DDX39A-213ENST00000590315 TDRD9Q8NDG6 1382 aaKnown RBP21.75■■□□□ 1.07
DDX39A-213ENST00000590315 GAPVD1Q14C86 1478 aa21.7■■□□□ 1.06
DDX39A-213ENST00000590315 CHIC1Q5VXU3 224 aa21.66■■□□□ 1.06
DDX39A-213ENST00000590315 CHD1O14646 1710 aa21.65■■□□□ 1.06
DDX39A-213ENST00000590315 GRIN2BQ13224 1484 aa21.64■■□□□ 1.06
DDX39A-213ENST00000590315 SNAPC4Q5SXM2 1469 aa21.62■■□□□ 1.05
DDX39A-213ENST00000590315 KIF27Q86VH2 1401 aa21.62■■□□□ 1.05
DDX39A-213ENST00000590315 ERICH3Q5RHP9 1530 aa21.56■■□□□ 1.04
DDX39A-213ENST00000590315 MAGI1Q96QZ7 1491 aaPredicted RBP21.56■■□□□ 1.04
DDX39A-213ENST00000590315 ADAMTS12P58397 1594 aa21.55■■□□□ 1.04
DDX39A-213ENST00000590315 CUL7Q14999 1698 aa21.53■■□□□ 1.04
DDX39A-213ENST00000590315 RUSC2Q8N2Y8 1516 aa21.52■■□□□ 1.04
DDX39A-213ENST00000590315 FBLN2P98095 1184 aa21.52■■□□□ 1.04
DDX39A-213ENST00000590315 SYNJ2O15056 1496 aa21.47■■□□□ 1.03
DDX39A-213ENST00000590315 CHMP7Q8WUX9 453 aaPredicted RBP21.44■■□□□ 1.02
DDX39A-213ENST00000590315 FHAD1B1AJZ9 1412 aa21.43■■□□□ 1.02
DDX39A-213ENST00000590315 FAM9AQ8IZU1 332 aaPredicted RBP21.42■■□□□ 1.02
DDX39A-213ENST00000590315 IGF1RP08069 1367 aa21.39■■□□□ 1.02
DDX39A-213ENST00000590315 EEA1Q15075 1411 aa21.38■■□□□ 1.01
DDX39A-213ENST00000590315 GRIN2AQ12879 1464 aa21.38■■□□□ 1.01
DDX39A-213ENST00000590315 CARMIL1Q5VZK9 1371 aa21.35■■□□□ 1.01
DDX39A-213ENST00000590315 OSCARQ8IYS5 282 aa21.32■■□□□ 1
DDX39A-213ENST00000590315 CEP170Q5SW79 1584 aa21.31■■□□□ 1
DDX39A-213ENST00000590315 RAPGEF2Q9Y4G8 1499 aa21.28■■□□□ 1
DDX39A-213ENST00000590315 CSRNP3Q8WYN3 585 aa21.28■■□□□ 1
DDX39A-213ENST00000590315 CTTNBP2Q8WZ74 1663 aa21.28■■□□□ 1
DDX39A-213ENST00000590315 CLASP1Q7Z460 1538 aa21.24■□□□□ 0.99
DDX39A-213ENST00000590315 KIF21BO75037 1637 aa21.23■□□□□ 0.99
DDX39A-213ENST00000590315 PRXQ9BXM0 1461 aa21.21■□□□□ 0.99
DDX39A-213ENST00000590315 NUP160Q12769 1436 aa21.21■□□□□ 0.99
DDX39A-213ENST00000590315 EHMT2Q96KQ7 1210 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms