RNA–Protein interactions for RNA: ENST00000590266.5

SCAMP4-212, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 5

Gene SCAMP4, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-212ENST00000590266 NISCHQ9Y2I1 1504 aa33.99■■■■□ 3.03
SCAMP4-212ENST00000590266 CCDC180Q9P1Z9 1646 aa30.14■■■□□ 2.41
SCAMP4-212ENST00000590266 ABCC9O60706 1549 aa29.76■■■□□ 2.35
SCAMP4-212ENST00000590266 DCAF8L2P0C7V8 631 aa28.66■■■□□ 2.18
SCAMP4-212ENST00000590266 RB1CC1Q8TDY2 1594 aa28.48■■■□□ 2.15
SCAMP4-212ENST00000590266 NACADO15069 1562 aa28.41■■■□□ 2.14
SCAMP4-212ENST00000590266 ZCCHC6Q5VYS8 1495 aaKnown RBP28.3■■■□□ 2.12
SCAMP4-212ENST00000590266 MYO15BQ96JP2 1530 aa28.15■■■□□ 2.1
SCAMP4-212ENST00000590266 DCAF1Q9Y4B6 1507 aa28.03■■■□□ 2.08
SCAMP4-212ENST00000590266 PABPN1Q86U42 306 aaKnown RBP eCLIP27.85■■■□□ 2.05
SCAMP4-212ENST00000590266 DNAJC5BQ9UF47 199 aa27.74■■■□□ 2.03
SCAMP4-212ENST00000590266 UNC13AQ9UPW8 1703 aa27.71■■■□□ 2.03
SCAMP4-212ENST00000590266 SCRIBQ14160 1630 aa27.67■■■□□ 2.02
SCAMP4-212ENST00000590266 BICRAQ9NZM4 1560 aa27.6■■■□□ 2.01
SCAMP4-212ENST00000590266 SHROOM4Q9ULL8 1493 aa27.25■■□□□ 1.95
SCAMP4-212ENST00000590266 EIF4G1Q04637 1599 aaKnown RBP26.91■■□□□ 1.9
SCAMP4-212ENST00000590266 CC2D2AQ9P2K1 1620 aa26.82■■□□□ 1.88
SCAMP4-212ENST00000590266 CECR2Q9BXF3 1484 aa26.79■■□□□ 1.88
SCAMP4-212ENST00000590266 SMARCA4P51532 1647 aa26.37■■□□□ 1.81
SCAMP4-212ENST00000590266 BAZ1AQ9NRL2 1556 aaPredicted RBP26.34■■□□□ 1.81
SCAMP4-212ENST00000590266 ATAD2BQ9ULI0 1458 aa26.28■■□□□ 1.8
SCAMP4-212ENST00000590266 NCAPD3P42695 1498 aa26.23■■□□□ 1.79
SCAMP4-212ENST00000590266 MROH2BQ7Z745 1585 aa26.23■■□□□ 1.79
SCAMP4-212ENST00000590266 SMARCA2P51531 1590 aa26.21■■□□□ 1.79
SCAMP4-212ENST00000590266 BAZ1BQ9UIG0 1483 aaKnown RBP26.1■■□□□ 1.77
SCAMP4-212ENST00000590266 HMGXB3Q12766 1538 aa26.09■■□□□ 1.77
SCAMP4-212ENST00000590266 PEG3Q9GZU2 1588 aa26.05■■□□□ 1.76
SCAMP4-212ENST00000590266 WIZO95785 1651 aa25.93■■□□□ 1.74
SCAMP4-212ENST00000590266 RSF1Q96T23 1441 aaPredicted RBP25.91■■□□□ 1.74
SCAMP4-212ENST00000590266 ERCC6Q03468 1493 aa25.75■■□□□ 1.71
SCAMP4-212ENST00000590266 NESP48681 1621 aa25.71■■□□□ 1.71
SCAMP4-212ENST00000590266 TOP2AP11388 1531 aaKnown RBP25.64■■□□□ 1.7
SCAMP4-212ENST00000590266 CUX2O14529 1486 aa25.57■■□□□ 1.68
SCAMP4-212ENST00000590266 LAMC3Q9Y6N6 1575 aa25.54■■□□□ 1.68
SCAMP4-212ENST00000590266 CADPSQ9ULU8 1353 aa25.52■■□□□ 1.68
SCAMP4-212ENST00000590266 DNAJC5Q9H3Z4 198 aa25.45■■□□□ 1.66
SCAMP4-212ENST00000590266 PDS5BQ9NTI5 1447 aa25.44■■□□□ 1.66
SCAMP4-212ENST00000590266 SUPT5HO00267 1087 aaKnown RBP25.39■■□□□ 1.66
SCAMP4-212ENST00000590266 CCDC88BA6NC98 1476 aa25.38■■□□□ 1.65
SCAMP4-212ENST00000590266 CFTRP13569 1480 aa25.33■■□□□ 1.65
SCAMP4-212ENST00000590266 KIF21AQ7Z4S6 1674 aa25.3■■□□□ 1.64
SCAMP4-212ENST00000590266 FANCD2Q9BXW9 1451 aa25.25■■□□□ 1.63
SCAMP4-212ENST00000590266 THOC2Q8NI27 1593 aaKnown RBP25.24■■□□□ 1.63
SCAMP4-212ENST00000590266 CEP164Q9UPV0 1460 aa25.21■■□□□ 1.63
SCAMP4-212ENST00000590266 MRC2Q9UBG0 1479 aa25.18■■□□□ 1.62
SCAMP4-212ENST00000590266 WDR62O43379 1518 aa25.05■■□□□ 1.6
SCAMP4-212ENST00000590266 URB2Q14146 1524 aaKnown RBP24.98■■□□□ 1.59
SCAMP4-212ENST00000590266 PRDM2Q13029 1718 aa24.98■■□□□ 1.59
SCAMP4-212ENST00000590266 TOPBP1Q92547 1522 aa24.81■■□□□ 1.56
SCAMP4-212ENST00000590266 ABCC8Q09428 1581 aa24.75■■□□□ 1.55
SCAMP4-212ENST00000590266 DNMBPQ6XZF7 1577 aa24.75■■□□□ 1.55
SCAMP4-212ENST00000590266 IFT140Q96RY7 1462 aa24.66■■□□□ 1.54
SCAMP4-212ENST00000590266 CUX1P39880 1505 aa24.61■■□□□ 1.53
SCAMP4-212ENST00000590266 POLA1P09884 1462 aaPredicted RBP24.6■■□□□ 1.53
SCAMP4-212ENST00000590266 ZNF608Q9ULD9 1512 aaPredicted RBP24.6■■□□□ 1.53
SCAMP4-212ENST00000590266 FGD5Q6ZNL6 1462 aa24.56■■□□□ 1.52
SCAMP4-212ENST00000590266 RAD54L2Q9Y4B4 1467 aa24.55■■□□□ 1.52
SCAMP4-212ENST00000590266 SOGA1O94964 1423 aa24.53■■□□□ 1.52
SCAMP4-212ENST00000590266 OSCARQ8IYS5 282 aa24.52■■□□□ 1.52
SCAMP4-212ENST00000590266 TRIM41Q8WV44 630 aa24.5■■□□□ 1.51
SCAMP4-212ENST00000590266 TARBP1Q13395 1621 aaKnown RBP24.49■■□□□ 1.51
SCAMP4-212ENST00000590266 AQRO60306 1485 aaKnown RBP eCLIP24.47■■□□□ 1.516e-12■■■■■ 56.8
SCAMP4-212ENST00000590266 WRNQ14191 1432 aaPredicted RBP eCLIP24.46■■□□□ 1.51
SCAMP4-212ENST00000590266 EIF4G3O43432 1585 aaKnown RBP24.45■■□□□ 1.5
SCAMP4-212ENST00000590266 TDRD9Q8NDG6 1382 aaKnown RBP24.44■■□□□ 1.5
SCAMP4-212ENST00000590266 SYNJ1O43426 1573 aa24.37■■□□□ 1.49
SCAMP4-212ENST00000590266 TOP2BQ02880 1626 aa24.34■■□□□ 1.49
SCAMP4-212ENST00000590266 BIVM-ERCC5R4GMW8 1640 aa24.3■■□□□ 1.48
SCAMP4-212ENST00000590266 FBLN2P98095 1184 aa24.29■■□□□ 1.48
SCAMP4-212ENST00000590266 ABCA10Q8WWZ4 1543 aa24.26■■□□□ 1.47
SCAMP4-212ENST00000590266 SNAPC4Q5SXM2 1469 aa24.24■■□□□ 1.47
SCAMP4-212ENST00000590266 WDR97A6NE52 1622 aa24.24■■□□□ 1.47
SCAMP4-212ENST00000590266 GRIN2BQ13224 1484 aa24.23■■□□□ 1.47
SCAMP4-212ENST00000590266 GAPVD1Q14C86 1478 aa24.23■■□□□ 1.47
SCAMP4-212ENST00000590266 CHMP7Q8WUX9 453 aaPredicted RBP24.15■■□□□ 1.46
SCAMP4-212ENST00000590266 ABCA5Q8WWZ7 1642 aa24.14■■□□□ 1.46
SCAMP4-212ENST00000590266 MAGI1Q96QZ7 1491 aaPredicted RBP24.13■■□□□ 1.45
SCAMP4-212ENST00000590266 CHD1O14646 1710 aa24.1■■□□□ 1.45
SCAMP4-212ENST00000590266 PBRM1Q86U86 1689 aa24.1■■□□□ 1.45
SCAMP4-212ENST00000590266 SYNJ2O15056 1496 aa24.07■■□□□ 1.44
SCAMP4-212ENST00000590266 RIMBP3CA6NJZ7 1639 aa24.04■■□□□ 1.44
SCAMP4-212ENST00000590266 RIMBP3BA6NNM3 1639 aa24.04■■□□□ 1.44
SCAMP4-212ENST00000590266 RIMBP3Q9UFD9 1639 aa24.04■■□□□ 1.44
SCAMP4-212ENST00000590266 ARHGEF11O15085 1522 aa24.02■■□□□ 1.44
SCAMP4-212ENST00000590266 ERICH3Q5RHP9 1530 aa23.96■■□□□ 1.43
SCAMP4-212ENST00000590266 ADAMTS12P58397 1594 aa23.95■■□□□ 1.43
SCAMP4-212ENST00000590266 KIF27Q86VH2 1401 aa23.95■■□□□ 1.42
SCAMP4-212ENST00000590266 CYB5RLQ6IPT4 315 aa23.95■■□□□ 1.42
SCAMP4-212ENST00000590266 FHAD1B1AJZ9 1412 aa23.94■■□□□ 1.42
SCAMP4-212ENST00000590266 GRIN2AQ12879 1464 aa23.92■■□□□ 1.42
SCAMP4-212ENST00000590266 CLASP1Q7Z460 1538 aa23.86■■□□□ 1.41
SCAMP4-212ENST00000590266 IGF1RP08069 1367 aa23.85■■□□□ 1.41
SCAMP4-212ENST00000590266 CEP170Q5SW79 1584 aa23.78■■□□□ 1.4
SCAMP4-212ENST00000590266 NUP160Q12769 1436 aa23.78■■□□□ 1.4
SCAMP4-212ENST00000590266 ARAP1Q96P48 1450 aa23.78■■□□□ 1.4
SCAMP4-212ENST00000590266 RUSC2Q8N2Y8 1516 aa23.74■■□□□ 1.39
SCAMP4-212ENST00000590266 CARMIL1Q5VZK9 1371 aa23.73■■□□□ 1.39
SCAMP4-212ENST00000590266 CUL7Q14999 1698 aa23.71■■□□□ 1.39
SCAMP4-212ENST00000590266 TRHP20396 242 aaPredicted RBP23.71■■□□□ 1.39
SCAMP4-212ENST00000590266 JPH4Q96JJ6 628 aa23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms