RNA–Protein interactions for RNA: ENST00000590215.1

MBD1-223, Transcript of methyl-CpG binding domain protein 1, human

TSL 5

Gene MBD1, Length 749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD1-223	ENST00000590215	NISCH	Q9Y2I1	1504 aa		45.29	■■■■■ 4.84
MBD1-223	ENST00000590215	CCDC180	Q9P1Z9	1646 aa		40.13	■■■■■ 4.02
MBD1-223	ENST00000590215	ABCC9	O60706	1549 aa		39.04	■■■■□ 3.84
MBD1-223	ENST00000590215	ZCCHC6	Q5VYS8	1495 aa	Known RBP	37.77	■■■■□ 3.64
MBD1-223	ENST00000590215	NACAD	O15069	1562 aa		37.72	■■■■□ 3.63
MBD1-223	ENST00000590215	RB1CC1	Q8TDY2	1594 aa		37.68	■■■■□ 3.62
MBD1-223	ENST00000590215	DCAF8L2	P0C7V8	631 aa		37.64	■■■■□ 3.62
MBD1-223	ENST00000590215	MYO15B	Q96JP2	1530 aa		37.63	■■■■□ 3.61
MBD1-223	ENST00000590215	DCAF1	Q9Y4B6	1507 aa		37.53	■■■■□ 3.6
MBD1-223	ENST00000590215	UNC13A	Q9UPW8	1703 aa		36.77	■■■■□ 3.48
MBD1-223	ENST00000590215	SCRIB	Q14160	1630 aa		36.57	■■■■□ 3.44
MBD1-223	ENST00000590215	BICRA	Q9NZM4	1560 aa		36.56	■■■■□ 3.44
MBD1-223	ENST00000590215	PABPN1	Q86U42	306 aa	Known RBP eCLIP	36.53	■■■■□ 3.44
MBD1-223	ENST00000590215	SHROOM4	Q9ULL8	1493 aa		36.24	■■■■□ 3.39
MBD1-223	ENST00000590215	DNAJC5B	Q9UF47	199 aa		35.71	■■■■□ 3.31
MBD1-223	ENST00000590215	EIF4G1	Q04637	1599 aa	Known RBP	35.55	■■■■□ 3.28
MBD1-223	ENST00000590215	CC2D2A	Q9P2K1	1620 aa		35.34	■■■■□ 3.25
MBD1-223	ENST00000590215	CECR2	Q9BXF3	1484 aa		35.24	■■■■□ 3.23
MBD1-223	ENST00000590215	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	35.06	■■■■□ 3.2
MBD1-223	ENST00000590215	SMARCA4	P51532	1647 aa		35.06	■■■■□ 3.2
MBD1-223	ENST00000590215	MROH2B	Q7Z745	1585 aa		34.88	■■■■□ 3.17
MBD1-223	ENST00000590215	ATAD2B	Q9ULI0	1458 aa		34.86	■■■■□ 3.17
MBD1-223	ENST00000590215	NCAPD3	P42695	1498 aa		34.84	■■■■□ 3.17
MBD1-223	ENST00000590215	SMARCA2	P51531	1590 aa		34.81	■■■■□ 3.16
MBD1-223	ENST00000590215	PEG3	Q9GZU2	1588 aa		34.78	■■■■□ 3.16
MBD1-223	ENST00000590215	HMGXB3	Q12766	1538 aa		34.65	■■■■□ 3.14
MBD1-223	ENST00000590215	RSF1	Q96T23	1441 aa	Predicted RBP	34.59	■■■■□ 3.13
MBD1-223	ENST00000590215	BAZ1B	Q9UIG0	1483 aa	Known RBP	34.54	■■■■□ 3.12
MBD1-223	ENST00000590215	WIZ	O95785	1651 aa		34.47	■■■■□ 3.11
MBD1-223	ENST00000590215	TOP2A	P11388	1531 aa	Known RBP	34.16	■■■■□ 3.06
MBD1-223	ENST00000590215	NES	P48681	1621 aa		33.86	■■■■□ 3.01
MBD1-223	ENST00000590215	LAMC3	Q9Y6N6	1575 aa		33.83	■■■■□ 3.01
MBD1-223	ENST00000590215	CADPS	Q9ULU8	1353 aa		33.82	■■■■□ 3
MBD1-223	ENST00000590215	SUPT5H	O00267	1087 aa	Known RBP	33.77	■■■■□ 3
MBD1-223	ENST00000590215	CCDC88B	A6NC98	1476 aa		33.76	■■■■□ 3
MBD1-223	ENST00000590215	CFTR	P13569	1480 aa		33.67	■■■□□ 2.98
MBD1-223	ENST00000590215	ERCC6	Q03468	1493 aa		33.62	■■■□□ 2.97
MBD1-223	ENST00000590215	PDS5B	Q9NTI5	1447 aa		33.62	■■■□□ 2.97
MBD1-223	ENST00000590215	KIF21A	Q7Z4S6	1674 aa		33.42	■■■□□ 2.94
MBD1-223	ENST00000590215	FANCD2	Q9BXW9	1451 aa		33.38	■■■□□ 2.93
MBD1-223	ENST00000590215	PRDM2	Q13029	1718 aa		33.32	■■■□□ 2.92
MBD1-223	ENST00000590215	CEP164	Q9UPV0	1460 aa		33.31	■■■□□ 2.92
MBD1-223	ENST00000590215	THOC2	Q8NI27	1593 aa	Known RBP	33.31	■■■□□ 2.92
MBD1-223	ENST00000590215	CUX2	O14529	1486 aa		33.26	■■■□□ 2.92
MBD1-223	ENST00000590215	MRC2	Q9UBG0	1479 aa		33.24	■■■□□ 2.91
MBD1-223	ENST00000590215	WDR62	O43379	1518 aa		33.13	■■■□□ 2.89
MBD1-223	ENST00000590215	URB2	Q14146	1524 aa	Known RBP	33.05	■■■□□ 2.88
MBD1-223	ENST00000590215	ABCC8	Q09428	1581 aa		32.92	■■■□□ 2.86
MBD1-223	ENST00000590215	TOPBP1	Q92547	1522 aa		32.88	■■■□□ 2.85
MBD1-223	ENST00000590215	DNMBP	Q6XZF7	1577 aa		32.85	■■■□□ 2.85
MBD1-223	ENST00000590215	CUX1	P39880	1505 aa		32.72	■■■□□ 2.83
MBD1-223	ENST00000590215	IFT140	Q96RY7	1462 aa		32.64	■■■□□ 2.82
MBD1-223	ENST00000590215	POLA1	P09884	1462 aa	Predicted RBP	32.62	■■■□□ 2.81
MBD1-223	ENST00000590215	WRN	Q14191	1432 aa	Predicted RBP eCLIP	32.58	■■■□□ 2.81
MBD1-223	ENST00000590215	FGD5	Q6ZNL6	1462 aa		32.55	■■■□□ 2.8
MBD1-223	ENST00000590215	TARBP1	Q13395	1621 aa	Known RBP	32.51	■■■□□ 2.79
MBD1-223	ENST00000590215	SOGA1	O94964	1423 aa		32.49	■■■□□ 2.79
MBD1-223	ENST00000590215	TOP2B	Q02880	1626 aa		32.48	■■■□□ 2.79
MBD1-223	ENST00000590215	BIVM-ERCC5	R4GMW8	1640 aa		32.47	■■■□□ 2.79
MBD1-223	ENST00000590215	SYNJ1	O43426	1573 aa		32.46	■■■□□ 2.79
MBD1-223	ENST00000590215	RAD54L2	Q9Y4B4	1467 aa		32.46	■■■□□ 2.79
MBD1-223	ENST00000590215	ZNF608	Q9ULD9	1512 aa	Predicted RBP	32.45	■■■□□ 2.78
MBD1-223	ENST00000590215	AQR	O60306	1485 aa	Known RBP eCLIP	32.29	■■■□□ 2.76
MBD1-223	ENST00000590215	EIF4G3	O43432	1585 aa	Known RBP	32.29	■■■□□ 2.76
MBD1-223	ENST00000590215	ABCA10	Q8WWZ4	1543 aa		32.29	■■■□□ 2.76
MBD1-223	ENST00000590215	WDR97	A6NE52	1622 aa		32.29	■■■□□ 2.76
MBD1-223	ENST00000590215	TDRD9	Q8NDG6	1382 aa	Known RBP	32.27	■■■□□ 2.76
MBD1-223	ENST00000590215	GAPVD1	Q14C86	1478 aa		32.12	■■■□□ 2.73
MBD1-223	ENST00000590215	ABCA5	Q8WWZ7	1642 aa		32.11	■■■□□ 2.73
MBD1-223	ENST00000590215	GRIN2B	Q13224	1484 aa		32.1	■■■□□ 2.73
MBD1-223	ENST00000590215	DNAJC5	Q9H3Z4	198 aa		32.02	■■■□□ 2.72
MBD1-223	ENST00000590215	SNAPC4	Q5SXM2	1469 aa		31.99	■■■□□ 2.71
MBD1-223	ENST00000590215	MAGI1	Q96QZ7	1491 aa	Predicted RBP	31.99	■■■□□ 2.71
MBD1-223	ENST00000590215	PBRM1	Q86U86	1689 aa		31.96	■■■□□ 2.71
MBD1-223	ENST00000590215	OSCAR	Q8IYS5	282 aa		31.92	■■■□□ 2.7
MBD1-223	ENST00000590215	TRIM41	Q8WV44	630 aa		31.92	■■■□□ 2.7
MBD1-223	ENST00000590215	ERICH3	Q5RHP9	1530 aa		31.9	■■■□□ 2.7
MBD1-223	ENST00000590215	KIF27	Q86VH2	1401 aa		31.89	■■■□□ 2.7
MBD1-223	ENST00000590215	SYNJ2	O15056	1496 aa		31.85	■■■□□ 2.69
MBD1-223	ENST00000590215	CHD1	O14646	1710 aa		31.82	■■■□□ 2.68
MBD1-223	ENST00000590215	FBLN2	P98095	1184 aa		31.81	■■■□□ 2.68
MBD1-223	ENST00000590215	CHMP7	Q8WUX9	453 aa	Predicted RBP	31.8	■■■□□ 2.68
MBD1-223	ENST00000590215	IGF1R	P08069	1367 aa		31.78	■■■□□ 2.68
MBD1-223	ENST00000590215	ADAMTS12	P58397	1594 aa		31.77	■■■□□ 2.68
MBD1-223	ENST00000590215	FHAD1	B1AJZ9	1412 aa		31.77	■■■□□ 2.68
MBD1-223	ENST00000590215	CHIC1	Q5VXU3	224 aa		31.72	■■■□□ 2.67
MBD1-223	ENST00000590215	GRIN2A	Q12879	1464 aa		31.67	■■■□□ 2.66
MBD1-223	ENST00000590215	RUSC2	Q8N2Y8	1516 aa		31.64	■■■□□ 2.66
MBD1-223	ENST00000590215	CUL7	Q14999	1698 aa		31.6	■■■□□ 2.65
MBD1-223	ENST00000590215	NUP160	Q12769	1436 aa		31.57	■■■□□ 2.64
MBD1-223	ENST00000590215	CARMIL1	Q5VZK9	1371 aa		31.56	■■■□□ 2.64
MBD1-223	ENST00000590215	CLASP1	Q7Z460	1538 aa		31.56	■■■□□ 2.64
MBD1-223	ENST00000590215	CEP170	Q5SW79	1584 aa		31.48	■■■□□ 2.63
MBD1-223	ENST00000590215	EEA1	Q15075	1411 aa		31.43	■■■□□ 2.62
MBD1-223	ENST00000590215	RAPGEF2	Q9Y4G8	1499 aa		31.39	■■■□□ 2.62
MBD1-223	ENST00000590215	ARHGEF11	O15085	1522 aa		31.38	■■■□□ 2.61
MBD1-223	ENST00000590215	PRX	Q9BXM0	1461 aa		31.36	■■■□□ 2.61
MBD1-223	ENST00000590215	CSRNP3	Q8WYN3	585 aa		31.36	■■■□□ 2.61
MBD1-223	ENST00000590215	RIMBP3C	A6NJZ7	1639 aa		31.33	■■■□□ 2.61
MBD1-223	ENST00000590215	RIMBP3B	A6NNM3	1639 aa		31.33	■■■□□ 2.61

Retrieved 100 of 20,778 RNA–protein pairs in 151 ms