RNA–Protein interactions for RNA: ENST00000590180.1

TPM4-212, Transcript of tropomyosin 4, humanhuman

TSL 3

Gene TPM4, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-212ENST00000590180 NISCHQ9Y2I1 1504 aa29.31■■■□□ 2.28
TPM4-212ENST00000590180 CCDC180Q9P1Z9 1646 aa26■■□□□ 1.75
TPM4-212ENST00000590180 ABCC9O60706 1549 aa25.82■■□□□ 1.72
TPM4-212ENST00000590180 DCAF8L2P0C7V8 631 aa24.87■■□□□ 1.57
TPM4-212ENST00000590180 RB1CC1Q8TDY2 1594 aa24.66■■□□□ 1.54
TPM4-212ENST00000590180 NACADO15069 1562 aa24.59■■□□□ 1.53
TPM4-212ENST00000590180 ZCCHC6Q5VYS8 1495 aaKnown RBP24.33■■□□□ 1.49
TPM4-212ENST00000590180 MYO15BQ96JP2 1530 aa24.33■■□□□ 1.49
TPM4-212ENST00000590180 PABPN1Q86U42 306 aaKnown RBP eCLIP24.21■■□□□ 1.47
TPM4-212ENST00000590180 DCAF1Q9Y4B6 1507 aa24.17■■□□□ 1.46
TPM4-212ENST00000590180 UNC13AQ9UPW8 1703 aa24■■□□□ 1.43
TPM4-212ENST00000590180 DNAJC5BQ9UF47 199 aa23.93■■□□□ 1.42
TPM4-212ENST00000590180 BICRAQ9NZM4 1560 aa23.88■■□□□ 1.41
TPM4-212ENST00000590180 SCRIBQ14160 1630 aa23.83■■□□□ 1.41
TPM4-212ENST00000590180 SHROOM4Q9ULL8 1493 aa23.56■■□□□ 1.36
TPM4-212ENST00000590180 EIF4G1Q04637 1599 aaKnown RBP23.3■■□□□ 1.32
TPM4-212ENST00000590180 CC2D2AQ9P2K1 1620 aa23.26■■□□□ 1.31
TPM4-212ENST00000590180 CECR2Q9BXF3 1484 aa23.19■■□□□ 1.3
TPM4-212ENST00000590180 NCAPD3P42695 1498 aa22.73■■□□□ 1.23
TPM4-212ENST00000590180 SMARCA4P51532 1647 aa22.73■■□□□ 1.23
TPM4-212ENST00000590180 ATAD2BQ9ULI0 1458 aa22.73■■□□□ 1.23
TPM4-212ENST00000590180 BAZ1AQ9NRL2 1556 aaPredicted RBP22.72■■□□□ 1.23
TPM4-212ENST00000590180 SMARCA2P51531 1590 aa22.65■■□□□ 1.22
TPM4-212ENST00000590180 MROH2BQ7Z745 1585 aa22.6■■□□□ 1.21
TPM4-212ENST00000590180 BAZ1BQ9UIG0 1483 aaKnown RBP22.54■■□□□ 1.2
TPM4-212ENST00000590180 HMGXB3Q12766 1538 aa22.52■■□□□ 1.19
TPM4-212ENST00000590180 PEG3Q9GZU2 1588 aa22.47■■□□□ 1.19
TPM4-212ENST00000590180 WIZO95785 1651 aa22.33■■□□□ 1.17
TPM4-212ENST00000590180 RSF1Q96T23 1441 aaPredicted RBP22.31■■□□□ 1.16
TPM4-212ENST00000590180 NESP48681 1621 aa22.27■■□□□ 1.16
TPM4-212ENST00000590180 ERCC6Q03468 1493 aa22.27■■□□□ 1.16
TPM4-212ENST00000590180 CADPSQ9ULU8 1353 aa22.12■■□□□ 1.13
TPM4-212ENST00000590180 LAMC3Q9Y6N6 1575 aa22.1■■□□□ 1.13
TPM4-212ENST00000590180 PDS5BQ9NTI5 1447 aa22.06■■□□□ 1.12
TPM4-212ENST00000590180 TOP2AP11388 1531 aaKnown RBP22.06■■□□□ 1.12
TPM4-212ENST00000590180 CUX2O14529 1486 aa22.01■■□□□ 1.11
TPM4-212ENST00000590180 CCDC88BA6NC98 1476 aa21.89■■□□□ 1.09
TPM4-212ENST00000590180 CFTRP13569 1480 aa21.89■■□□□ 1.09
TPM4-212ENST00000590180 KIF21AQ7Z4S6 1674 aa21.88■■□□□ 1.09
TPM4-212ENST00000590180 THOC2Q8NI27 1593 aaKnown RBP21.83■■□□□ 1.09
TPM4-212ENST00000590180 SUPT5HO00267 1087 aaKnown RBP21.83■■□□□ 1.09
TPM4-212ENST00000590180 FANCD2Q9BXW9 1451 aa21.83■■□□□ 1.08
TPM4-212ENST00000590180 MRC2Q9UBG0 1479 aa21.79■■□□□ 1.08
TPM4-212ENST00000590180 CEP164Q9UPV0 1460 aa21.79■■□□□ 1.08
TPM4-212ENST00000590180 DNAJC5Q9H3Z4 198 aa21.69■■□□□ 1.06
TPM4-212ENST00000590180 WDR62O43379 1518 aa21.66■■□□□ 1.06
TPM4-212ENST00000590180 URB2Q14146 1524 aaKnown RBP21.59■■□□□ 1.05
TPM4-212ENST00000590180 PRDM2Q13029 1718 aa21.55■■□□□ 1.04
TPM4-212ENST00000590180 TOPBP1Q92547 1522 aa21.44■■□□□ 1.02
TPM4-212ENST00000590180 ABCC8Q09428 1581 aa21.44■■□□□ 1.02
TPM4-212ENST00000590180 IFT140Q96RY7 1462 aa21.36■■□□□ 1.01
TPM4-212ENST00000590180 DNMBPQ6XZF7 1577 aa21.36■■□□□ 1.01
TPM4-212ENST00000590180 ZNF608Q9ULD9 1512 aaPredicted RBP21.29■■□□□ 1
TPM4-212ENST00000590180 OSCARQ8IYS5 282 aa21.25■□□□□ 0.99
TPM4-212ENST00000590180 SOGA1O94964 1423 aa21.24■□□□□ 0.99
TPM4-212ENST00000590180 POLA1P09884 1462 aaPredicted RBP21.24■□□□□ 0.99
TPM4-212ENST00000590180 RAD54L2Q9Y4B4 1467 aa21.21■□□□□ 0.99
TPM4-212ENST00000590180 AQRO60306 1485 aaKnown RBP eCLIP21.2■□□□□ 0.98
TPM4-212ENST00000590180 CUX1P39880 1505 aa21.19■□□□□ 0.98
TPM4-212ENST00000590180 FGD5Q6ZNL6 1462 aa21.18■□□□□ 0.98
TPM4-212ENST00000590180 TDRD9Q8NDG6 1382 aaKnown RBP21.17■□□□□ 0.98
TPM4-212ENST00000590180 TARBP1Q13395 1621 aaKnown RBP21.15■□□□□ 0.98
TPM4-212ENST00000590180 FBLN2P98095 1184 aa21.11■□□□□ 0.97
TPM4-212ENST00000590180 EIF4G3O43432 1585 aaKnown RBP21.1■□□□□ 0.97
TPM4-212ENST00000590180 WRNQ14191 1432 aaPredicted RBP eCLIP21.06■□□□□ 0.96
TPM4-212ENST00000590180 CHMP7Q8WUX9 453 aaPredicted RBP20.98■□□□□ 0.95
TPM4-212ENST00000590180 TRIM41Q8WV44 630 aa20.98■□□□□ 0.95
TPM4-212ENST00000590180 GRIN2BQ13224 1484 aa20.95■□□□□ 0.94
TPM4-212ENST00000590180 GAPVD1Q14C86 1478 aa20.94■□□□□ 0.94
TPM4-212ENST00000590180 ABCA10Q8WWZ4 1543 aa20.94■□□□□ 0.94
TPM4-212ENST00000590180 SNAPC4Q5SXM2 1469 aa20.94■□□□□ 0.94
TPM4-212ENST00000590180 SYNJ1O43426 1573 aa20.93■□□□□ 0.94
TPM4-212ENST00000590180 TOP2BQ02880 1626 aa20.93■□□□□ 0.94
TPM4-212ENST00000590180 WDR97A6NE52 1622 aa20.93■□□□□ 0.94
TPM4-212ENST00000590180 BIVM-ERCC5R4GMW8 1640 aa20.89■□□□□ 0.94
TPM4-212ENST00000590180 MAGI1Q96QZ7 1491 aaPredicted RBP20.87■□□□□ 0.93
TPM4-212ENST00000590180 CHD1O14646 1710 aa20.87■□□□□ 0.93
TPM4-212ENST00000590180 SYNJ2O15056 1496 aa20.81■□□□□ 0.92
TPM4-212ENST00000590180 ABCA5Q8WWZ7 1642 aa20.8■□□□□ 0.92
TPM4-212ENST00000590180 PBRM1Q86U86 1689 aa20.78■□□□□ 0.92
TPM4-212ENST00000590180 CYB5RLQ6IPT4 315 aa20.75■□□□□ 0.91
TPM4-212ENST00000590180 ARHGEF11O15085 1522 aa20.74■□□□□ 0.91
TPM4-212ENST00000590180 RIMBP3CA6NJZ7 1639 aa20.74■□□□□ 0.91
TPM4-212ENST00000590180 RIMBP3BA6NNM3 1639 aa20.74■□□□□ 0.91
TPM4-212ENST00000590180 RIMBP3Q9UFD9 1639 aa20.74■□□□□ 0.91
TPM4-212ENST00000590180 FHAD1B1AJZ9 1412 aa20.7■□□□□ 0.9
TPM4-212ENST00000590180 ERICH3Q5RHP9 1530 aa20.67■□□□□ 0.9
TPM4-212ENST00000590180 GRIN2AQ12879 1464 aa20.65■□□□□ 0.9
TPM4-212ENST00000590180 KIF27Q86VH2 1401 aa20.65■□□□□ 0.9
TPM4-212ENST00000590180 CLASP1Q7Z460 1538 aa20.64■□□□□ 0.9
TPM4-212ENST00000590180 ADAMTS12P58397 1594 aa20.63■□□□□ 0.89
TPM4-212ENST00000590180 IGF1RP08069 1367 aa20.61■□□□□ 0.89
TPM4-212ENST00000590180 ARAP1Q96P48 1450 aa20.56■□□□□ 0.88
TPM4-212ENST00000590180 NUP160Q12769 1436 aa20.56■□□□□ 0.88
TPM4-212ENST00000590180 CEP170Q5SW79 1584 aa20.52■□□□□ 0.88
TPM4-212ENST00000590180 JPH4Q96JJ6 628 aa20.51■□□□□ 0.87
TPM4-212ENST00000590180 CARMIL1Q5VZK9 1371 aa20.5■□□□□ 0.87
TPM4-212ENST00000590180 TRHP20396 242 aaPredicted RBP20.43■□□□□ 0.86
TPM4-212ENST00000590180 RUSC2Q8N2Y8 1516 aa20.43■□□□□ 0.86
TPM4-212ENST00000590180 PRG4Q92954 1404 aaPredicted RBP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms