RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 NISCHQ9Y2I1 1504 aa24.77■■□□□ 1.56
VPS4B-204ENST00000589604 CCDC180Q9P1Z9 1646 aa21.88■■□□□ 1.09
VPS4B-204ENST00000589604 ABCC9O60706 1549 aa21.25■□□□□ 0.99
VPS4B-204ENST00000589604 ZCCHC6Q5VYS8 1495 aaKnown RBP20.69■□□□□ 0.9
VPS4B-204ENST00000589604 DCAF8L2P0C7V8 631 aa20.57■□□□□ 0.88
VPS4B-204ENST00000589604 NACADO15069 1562 aa20.5■□□□□ 0.87
VPS4B-204ENST00000589604 RB1CC1Q8TDY2 1594 aa20.47■□□□□ 0.87
VPS4B-204ENST00000589604 DCAF1Q9Y4B6 1507 aa20.45■□□□□ 0.86
VPS4B-204ENST00000589604 MYO15BQ96JP2 1530 aa20.44■□□□□ 0.86
VPS4B-204ENST00000589604 UNC13AQ9UPW8 1703 aa20.11■□□□□ 0.81
VPS4B-204ENST00000589604 CHIC1Q5VXU3 224 aa20.09■□□□□ 0.81
VPS4B-204ENST00000589604 SCRIBQ14160 1630 aa20.04■□□□□ 0.8
VPS4B-204ENST00000589604 BICRAQ9NZM4 1560 aa19.95■□□□□ 0.78
VPS4B-204ENST00000589604 PABPN1Q86U42 306 aaKnown RBP eCLIP19.91■□□□□ 0.78
VPS4B-204ENST00000589604 SHROOM4Q9ULL8 1493 aa19.75■□□□□ 0.75
VPS4B-204ENST00000589604 DNAJC5BQ9UF47 199 aa19.38■□□□□ 0.69
VPS4B-204ENST00000589604 EIF4G1Q04637 1599 aaKnown RBP19.35■□□□□ 0.69
VPS4B-204ENST00000589604 CECR2Q9BXF3 1484 aa19.33■□□□□ 0.69
VPS4B-204ENST00000589604 AEBP2Q6ZN18 517 aaPredicted RBP19.23■□□□□ 0.67
VPS4B-204ENST00000589604 CC2D2AQ9P2K1 1620 aa19.23■□□□□ 0.67
VPS4B-204ENST00000589604 SMARCA4P51532 1647 aa19.18■□□□□ 0.66
VPS4B-204ENST00000589604 MROH2BQ7Z745 1585 aa19.14■□□□□ 0.65
VPS4B-204ENST00000589604 BAZ1AQ9NRL2 1556 aaPredicted RBP19.13■□□□□ 0.65
VPS4B-204ENST00000589604 ATAD2BQ9ULI0 1458 aa19.01■□□□□ 0.63
VPS4B-204ENST00000589604 RSF1Q96T23 1441 aaPredicted RBP18.97■□□□□ 0.63
VPS4B-204ENST00000589604 PEG3Q9GZU2 1588 aa18.97■□□□□ 0.63
VPS4B-204ENST00000589604 WIZO95785 1651 aa18.95■□□□□ 0.62
VPS4B-204ENST00000589604 SMARCA2P51531 1590 aa18.94■□□□□ 0.62
VPS4B-204ENST00000589604 NCAPD3P42695 1498 aa18.94■□□□□ 0.62
VPS4B-204ENST00000589604 HMGXB3Q12766 1538 aa18.86■□□□□ 0.61
VPS4B-204ENST00000589604 BAZ1BQ9UIG0 1483 aaKnown RBP18.83■□□□□ 0.61
VPS4B-204ENST00000589604 TOP2AP11388 1531 aaKnown RBP18.7■□□□□ 0.58
VPS4B-204ENST00000589604 SUPT5HO00267 1087 aaKnown RBP18.65■□□□□ 0.58
VPS4B-204ENST00000589604 CCDC88BA6NC98 1476 aa18.51■□□□□ 0.55
VPS4B-204ENST00000589604 NESP48681 1621 aa18.5■□□□□ 0.55
VPS4B-204ENST00000589604 CADPSQ9ULU8 1353 aa18.39■□□□□ 0.54
VPS4B-204ENST00000589604 LAMC3Q9Y6N6 1575 aa18.38■□□□□ 0.53
VPS4B-204ENST00000589604 CFTRP13569 1480 aa18.35■□□□□ 0.53
VPS4B-204ENST00000589604 KIF21AQ7Z4S6 1674 aa18.26■□□□□ 0.51
VPS4B-204ENST00000589604 ERCC6Q03468 1493 aa18.22■□□□□ 0.51
VPS4B-204ENST00000589604 PDS5BQ9NTI5 1447 aa18.22■□□□□ 0.51
VPS4B-204ENST00000589604 PRDM2Q13029 1718 aa18.22■□□□□ 0.51
VPS4B-204ENST00000589604 FANCD2Q9BXW9 1451 aa18.19■□□□□ 0.5
VPS4B-204ENST00000589604 THOC2Q8NI27 1593 aaKnown RBP18.13■□□□□ 0.49
VPS4B-204ENST00000589604 CEP164Q9UPV0 1460 aa18.13■□□□□ 0.49
VPS4B-204ENST00000589604 MRC2Q9UBG0 1479 aa18.06■□□□□ 0.48
VPS4B-204ENST00000589604 URB2Q14146 1524 aaKnown RBP18.05■□□□□ 0.48
VPS4B-204ENST00000589604 WDR62O43379 1518 aa18.02■□□□□ 0.47
VPS4B-204ENST00000589604 TOPBP1Q92547 1522 aa17.95■□□□□ 0.46
VPS4B-204ENST00000589604 CUX2O14529 1486 aa17.94■□□□□ 0.46
VPS4B-204ENST00000589604 ABCC8Q09428 1581 aa17.94■□□□□ 0.46
VPS4B-204ENST00000589604 CUX1P39880 1505 aa17.93■□□□□ 0.46
VPS4B-204ENST00000589604 DNMBPQ6XZF7 1577 aa17.93■□□□□ 0.46
VPS4B-204ENST00000589604 PHF23Q9BUL5 403 aaPredicted RBP17.87■□□□□ 0.45
VPS4B-204ENST00000589604 SYNJ1O43426 1573 aa17.86■□□□□ 0.45
VPS4B-204ENST00000589604 WRNQ14191 1432 aaPredicted RBP eCLIP17.84■□□□□ 0.45
VPS4B-204ENST00000589604 POLA1P09884 1462 aaPredicted RBP17.82■□□□□ 0.44
VPS4B-204ENST00000589604 FGD5Q6ZNL6 1462 aa17.81■□□□□ 0.44
VPS4B-204ENST00000589604 BIVM-ERCC5R4GMW8 1640 aa17.8■□□□□ 0.44
VPS4B-204ENST00000589604 TOP2BQ02880 1626 aa17.8■□□□□ 0.44
VPS4B-204ENST00000589604 RAD54L2Q9Y4B4 1467 aa17.77■□□□□ 0.43
VPS4B-204ENST00000589604 TARBP1Q13395 1621 aaKnown RBP17.76■□□□□ 0.43
VPS4B-204ENST00000589604 DNAJC5Q9H3Z4 198 aa17.74■□□□□ 0.43
VPS4B-204ENST00000589604 IFT140Q96RY7 1462 aa17.73■□□□□ 0.43
VPS4B-204ENST00000589604 ZNF608Q9ULD9 1512 aaPredicted RBP17.72■□□□□ 0.43
VPS4B-204ENST00000589604 SOGA1O94964 1423 aa17.71■□□□□ 0.43
VPS4B-204ENST00000589604 WDR97A6NE52 1622 aa17.67■□□□□ 0.42
VPS4B-204ENST00000589604 AQRO60306 1485 aaKnown RBP eCLIP17.63■□□□□ 0.41
VPS4B-204ENST00000589604 EIF4G3O43432 1585 aaKnown RBP17.63■□□□□ 0.41
VPS4B-204ENST00000589604 TDRD9Q8NDG6 1382 aaKnown RBP17.62■□□□□ 0.41
VPS4B-204ENST00000589604 ABCA10Q8WWZ4 1543 aa17.62■□□□□ 0.41
VPS4B-204ENST00000589604 ABCA5Q8WWZ7 1642 aa17.57■□□□□ 0.4
VPS4B-204ENST00000589604 TRIM41Q8WV44 630 aa17.55■□□□□ 0.4
VPS4B-204ENST00000589604 GAPVD1Q14C86 1478 aa17.52■□□□□ 0.39
VPS4B-204ENST00000589604 PBRM1Q86U86 1689 aa17.49■□□□□ 0.39
VPS4B-204ENST00000589604 GRIN2BQ13224 1484 aa17.47■□□□□ 0.39
VPS4B-204ENST00000589604 RUSC2Q8N2Y8 1516 aa17.47■□□□□ 0.39
VPS4B-204ENST00000589604 SNAPC4Q5SXM2 1469 aa17.45■□□□□ 0.38
VPS4B-204ENST00000589604 KIF27Q86VH2 1401 aa17.41■□□□□ 0.38
VPS4B-204ENST00000589604 ERICH3Q5RHP9 1530 aa17.39■□□□□ 0.37
VPS4B-204ENST00000589604 MAGI1Q96QZ7 1491 aaPredicted RBP17.38■□□□□ 0.37
VPS4B-204ENST00000589604 IGF1RP08069 1367 aa17.38■□□□□ 0.37
VPS4B-204ENST00000589604 CHD1O14646 1710 aa17.37■□□□□ 0.37
VPS4B-204ENST00000589604 ADAMTS12P58397 1594 aa17.36■□□□□ 0.37
VPS4B-204ENST00000589604 SYNJ2O15056 1496 aa17.33■□□□□ 0.36
VPS4B-204ENST00000589604 FBLN2P98095 1184 aa17.31■□□□□ 0.36
VPS4B-204ENST00000589604 FHAD1B1AJZ9 1412 aa17.31■□□□□ 0.36
VPS4B-204ENST00000589604 CHMP7Q8WUX9 453 aaPredicted RBP17.28■□□□□ 0.36
VPS4B-204ENST00000589604 CUL7Q14999 1698 aa17.27■□□□□ 0.36
VPS4B-204ENST00000589604 GRIN2AQ12879 1464 aa17.27■□□□□ 0.35
VPS4B-204ENST00000589604 FAM9AQ8IZU1 332 aaPredicted RBP17.25■□□□□ 0.35
VPS4B-204ENST00000589604 CARMIL1Q5VZK9 1371 aa17.24■□□□□ 0.35
VPS4B-204ENST00000589604 OSCARQ8IYS5 282 aa17.23■□□□□ 0.35
VPS4B-204ENST00000589604 CEP170Q5SW79 1584 aa17.22■□□□□ 0.35
VPS4B-204ENST00000589604 CSRNP3Q8WYN3 585 aa17.2■□□□□ 0.34
VPS4B-204ENST00000589604 PRXQ9BXM0 1461 aa17.2■□□□□ 0.34
VPS4B-204ENST00000589604 EEA1Q15075 1411 aa17.2■□□□□ 0.34
VPS4B-204ENST00000589604 NUP160Q12769 1436 aa17.18■□□□□ 0.34
VPS4B-204ENST00000589604 CLASP1Q7Z460 1538 aa17.18■□□□□ 0.34
VPS4B-204ENST00000589604 RAPGEF2Q9Y4G8 1499 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms