RNA–Protein interactions for RNA: ENST00000589294.1

DNMT1-218, Transcript of DNA methyltransferase 1, humanhuman

TSL 2

Gene DNMT1, Length 575 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-218ENST00000589294 NISCHQ9Y2I1 1504 aa28.74■■■□□ 2.19
DNMT1-218ENST00000589294 CCDC180Q9P1Z9 1646 aa25.34■■□□□ 1.65
DNMT1-218ENST00000589294 ABCC9O60706 1549 aa24.45■■□□□ 1.5
DNMT1-218ENST00000589294 ZCCHC6Q5VYS8 1495 aaKnown RBP23.99■■□□□ 1.43
DNMT1-218ENST00000589294 DCAF8L2P0C7V8 631 aa23.93■■□□□ 1.42
DNMT1-218ENST00000589294 DCAF1Q9Y4B6 1507 aa23.83■■□□□ 1.41
DNMT1-218ENST00000589294 MYO15BQ96JP2 1530 aa23.81■■□□□ 1.4
DNMT1-218ENST00000589294 NACADO15069 1562 aa23.79■■□□□ 1.4
DNMT1-218ENST00000589294 RB1CC1Q8TDY2 1594 aa23.7■■□□□ 1.38
DNMT1-218ENST00000589294 SCRIBQ14160 1630 aa23.11■■□□□ 1.29
DNMT1-218ENST00000589294 UNC13AQ9UPW8 1703 aa23.06■■□□□ 1.28
DNMT1-218ENST00000589294 PABPN1Q86U42 306 aaKnown RBP eCLIP22.97■■□□□ 1.27
DNMT1-218ENST00000589294 BICRAQ9NZM4 1560 aa22.94■■□□□ 1.26
DNMT1-218ENST00000589294 SHROOM4Q9ULL8 1493 aa22.9■■□□□ 1.26
DNMT1-218ENST00000589294 CECR2Q9BXF3 1484 aa22.34■■□□□ 1.17
DNMT1-218ENST00000589294 EIF4G1Q04637 1599 aaKnown RBP22.32■■□□□ 1.16
DNMT1-218ENST00000589294 BAZ1AQ9NRL2 1556 aaPredicted RBP22.25■■□□□ 1.15
DNMT1-218ENST00000589294 SMARCA4P51532 1647 aa22.17■■□□□ 1.14
DNMT1-218ENST00000589294 DNAJC5BQ9UF47 199 aa22.17■■□□□ 1.14
DNMT1-218ENST00000589294 MROH2BQ7Z745 1585 aa22.13■■□□□ 1.13
DNMT1-218ENST00000589294 CC2D2AQ9P2K1 1620 aa22.12■■□□□ 1.13
DNMT1-218ENST00000589294 RSF1Q96T23 1441 aaPredicted RBP22.06■■□□□ 1.12
DNMT1-218ENST00000589294 ATAD2BQ9ULI0 1458 aa22.02■■□□□ 1.12
DNMT1-218ENST00000589294 SMARCA2P51531 1590 aa22■■□□□ 1.11
DNMT1-218ENST00000589294 PEG3Q9GZU2 1588 aa21.99■■□□□ 1.11
DNMT1-218ENST00000589294 NCAPD3P42695 1498 aa21.98■■□□□ 1.11
DNMT1-218ENST00000589294 WIZO95785 1651 aa21.88■■□□□ 1.09
DNMT1-218ENST00000589294 HMGXB3Q12766 1538 aa21.85■■□□□ 1.09
DNMT1-218ENST00000589294 BAZ1BQ9UIG0 1483 aaKnown RBP21.83■■□□□ 1.09
DNMT1-218ENST00000589294 SUPT5HO00267 1087 aaKnown RBP21.81■■□□□ 1.08
DNMT1-218ENST00000589294 TOP2AP11388 1531 aaKnown RBP21.7■■□□□ 1.06
DNMT1-218ENST00000589294 CCDC88BA6NC98 1476 aa21.49■■□□□ 1.03
DNMT1-218ENST00000589294 CADPSQ9ULU8 1353 aa21.37■■□□□ 1.01
DNMT1-218ENST00000589294 CFTRP13569 1480 aa21.3■■□□□ 1
DNMT1-218ENST00000589294 LAMC3Q9Y6N6 1575 aa21.29■■□□□ 1
DNMT1-218ENST00000589294 NESP48681 1621 aa21.26■□□□□ 0.99
DNMT1-218ENST00000589294 PDS5BQ9NTI5 1447 aa21.2■□□□□ 0.98
DNMT1-218ENST00000589294 FANCD2Q9BXW9 1451 aa21.07■□□□□ 0.96
DNMT1-218ENST00000589294 ERCC6Q03468 1493 aa21.07■□□□□ 0.96
DNMT1-218ENST00000589294 PRDM2Q13029 1718 aa21.04■□□□□ 0.96
DNMT1-218ENST00000589294 CEP164Q9UPV0 1460 aa21■□□□□ 0.95
DNMT1-218ENST00000589294 KIF21AQ7Z4S6 1674 aa20.96■□□□□ 0.95
DNMT1-218ENST00000589294 MRC2Q9UBG0 1479 aa20.89■□□□□ 0.94
DNMT1-218ENST00000589294 ABCC8Q09428 1581 aa20.86■□□□□ 0.93
DNMT1-218ENST00000589294 URB2Q14146 1524 aaKnown RBP20.82■□□□□ 0.92
DNMT1-218ENST00000589294 THOC2Q8NI27 1593 aaKnown RBP20.81■□□□□ 0.92
DNMT1-218ENST00000589294 WDR62O43379 1518 aa20.79■□□□□ 0.92
DNMT1-218ENST00000589294 WRNQ14191 1432 aaPredicted RBP eCLIP20.78■□□□□ 0.92
DNMT1-218ENST00000589294 TOPBP1Q92547 1522 aa20.77■□□□□ 0.92
DNMT1-218ENST00000589294 DNMBPQ6XZF7 1577 aa20.76■□□□□ 0.91
DNMT1-218ENST00000589294 CUX1P39880 1505 aa20.73■□□□□ 0.91
DNMT1-218ENST00000589294 CUX2O14529 1486 aa20.73■□□□□ 0.91
DNMT1-218ENST00000589294 TOP2BQ02880 1626 aa20.67■□□□□ 0.9
DNMT1-218ENST00000589294 SYNJ1O43426 1573 aa20.64■□□□□ 0.9
DNMT1-218ENST00000589294 BIVM-ERCC5R4GMW8 1640 aa20.63■□□□□ 0.89
DNMT1-218ENST00000589294 TRIM41Q8WV44 630 aa20.62■□□□□ 0.89
DNMT1-218ENST00000589294 POLA1P09884 1462 aaPredicted RBP20.62■□□□□ 0.89
DNMT1-218ENST00000589294 FGD5Q6ZNL6 1462 aa20.61■□□□□ 0.89
DNMT1-218ENST00000589294 CHIC1Q5VXU3 224 aa20.6■□□□□ 0.89
DNMT1-218ENST00000589294 SOGA1O94964 1423 aa20.6■□□□□ 0.89
DNMT1-218ENST00000589294 IFT140Q96RY7 1462 aa20.57■□□□□ 0.88
DNMT1-218ENST00000589294 RAD54L2Q9Y4B4 1467 aa20.52■□□□□ 0.88
DNMT1-218ENST00000589294 TARBP1Q13395 1621 aaKnown RBP20.49■□□□□ 0.87
DNMT1-218ENST00000589294 ABCA10Q8WWZ4 1543 aa20.46■□□□□ 0.87
DNMT1-218ENST00000589294 TDRD9Q8NDG6 1382 aaKnown RBP20.42■□□□□ 0.86
DNMT1-218ENST00000589294 ZNF608Q9ULD9 1512 aaPredicted RBP20.41■□□□□ 0.86
DNMT1-218ENST00000589294 WDR97A6NE52 1622 aa20.38■□□□□ 0.85
DNMT1-218ENST00000589294 AQRO60306 1485 aaKnown RBP eCLIP20.37■□□□□ 0.854e-13■■■■■ 41.7
DNMT1-218ENST00000589294 KIF27Q86VH2 1401 aa20.35■□□□□ 0.85
DNMT1-218ENST00000589294 GAPVD1Q14C86 1478 aa20.34■□□□□ 0.85
DNMT1-218ENST00000589294 EIF4G3O43432 1585 aaKnown RBP20.29■□□□□ 0.84
DNMT1-218ENST00000589294 GRIN2BQ13224 1484 aa20.29■□□□□ 0.84
DNMT1-218ENST00000589294 ABCA5Q8WWZ7 1642 aa20.28■□□□□ 0.84
DNMT1-218ENST00000589294 IGF1RP08069 1367 aa20.25■□□□□ 0.83
DNMT1-218ENST00000589294 ERICH3Q5RHP9 1530 aa20.22■□□□□ 0.83
DNMT1-218ENST00000589294 RUSC2Q8N2Y8 1516 aa20.22■□□□□ 0.83
DNMT1-218ENST00000589294 EEA1Q15075 1411 aa20.22■□□□□ 0.83
DNMT1-218ENST00000589294 MAGI1Q96QZ7 1491 aaPredicted RBP20.18■□□□□ 0.82
DNMT1-218ENST00000589294 CSRNP3Q8WYN3 585 aa20.18■□□□□ 0.82
DNMT1-218ENST00000589294 PBRM1Q86U86 1689 aa20.16■□□□□ 0.82
DNMT1-218ENST00000589294 SNAPC4Q5SXM2 1469 aa20.16■□□□□ 0.82
DNMT1-218ENST00000589294 FHAD1B1AJZ9 1412 aa20.13■□□□□ 0.81
DNMT1-218ENST00000589294 FAM9AQ8IZU1 332 aaPredicted RBP20.13■□□□□ 0.81
DNMT1-218ENST00000589294 CHMP7Q8WUX9 453 aaPredicted RBP20.13■□□□□ 0.81
DNMT1-218ENST00000589294 CARMIL1Q5VZK9 1371 aa20.11■□□□□ 0.81
DNMT1-218ENST00000589294 SYNJ2O15056 1496 aa20.11■□□□□ 0.81
DNMT1-218ENST00000589294 FBLN2P98095 1184 aa20.1■□□□□ 0.81
DNMT1-218ENST00000589294 CUL7Q14999 1698 aa20.07■□□□□ 0.8
DNMT1-218ENST00000589294 ADAMTS12P58397 1594 aa20.05■□□□□ 0.8
DNMT1-218ENST00000589294 PRXQ9BXM0 1461 aa20.04■□□□□ 0.8
DNMT1-218ENST00000589294 OSCARQ8IYS5 282 aa20.03■□□□□ 0.8
DNMT1-218ENST00000589294 RAPGEF2Q9Y4G8 1499 aa20.01■□□□□ 0.79
DNMT1-218ENST00000589294 GRIN2AQ12879 1464 aa19.99■□□□□ 0.79
DNMT1-218ENST00000589294 CHD1O14646 1710 aa19.95■□□□□ 0.78
DNMT1-218ENST00000589294 NUP160Q12769 1436 aa19.91■□□□□ 0.78
DNMT1-218ENST00000589294 KIF21BO75037 1637 aa19.9■□□□□ 0.78
DNMT1-218ENST00000589294 GOLGA3Q08378 1498 aa19.85■□□□□ 0.77
DNMT1-218ENST00000589294 CEP170Q5SW79 1584 aa19.84■□□□□ 0.77
DNMT1-218ENST00000589294 KIAA0586Q9BVV6 1533 aa19.84■□□□□ 0.77
DNMT1-218ENST00000589294 UBTFP17480 764 aaKnown RBP19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms