RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 NISCHQ9Y2I1 1504 aa26.39■■□□□ 1.82
VMP1-207ENST00000588131 CCDC180Q9P1Z9 1646 aa23.18■■□□□ 1.3
VMP1-207ENST00000588131 AEBP2Q6ZN18 517 aaPredicted RBP22.74■■□□□ 1.23
VMP1-207ENST00000588131 ABCC9O60706 1549 aa22.15■■□□□ 1.14
VMP1-207ENST00000588131 ZCCHC6Q5VYS8 1495 aaKnown RBP22.12■■□□□ 1.13
VMP1-207ENST00000588131 CHIC1Q5VXU3 224 aa21.83■■□□□ 1.09
VMP1-207ENST00000588131 DCAF1Q9Y4B6 1507 aa21.82■■□□□ 1.08
VMP1-207ENST00000588131 DCAF8L2P0C7V8 631 aa21.8■■□□□ 1.08
VMP1-207ENST00000588131 MYO15BQ96JP2 1530 aa21.66■■□□□ 1.06
VMP1-207ENST00000588131 NACADO15069 1562 aa21.63■■□□□ 1.05
VMP1-207ENST00000588131 RB1CC1Q8TDY2 1594 aa21.52■■□□□ 1.04
VMP1-207ENST00000588131 SHROOM4Q9ULL8 1493 aa21.29■■□□□ 1
VMP1-207ENST00000588131 SCRIBQ14160 1630 aa21.26■□□□□ 0.99
VMP1-207ENST00000588131 UNC13AQ9UPW8 1703 aa21.12■□□□□ 0.97
VMP1-207ENST00000588131 BICRAQ9NZM4 1560 aa20.9■□□□□ 0.94
VMP1-207ENST00000588131 PABPN1Q86U42 306 aaKnown RBP eCLIP20.8■□□□□ 0.92
VMP1-207ENST00000588131 CECR2Q9BXF3 1484 aa20.54■□□□□ 0.88
VMP1-207ENST00000588131 BAZ1AQ9NRL2 1556 aaPredicted RBP20.39■□□□□ 0.85
VMP1-207ENST00000588131 MROH2BQ7Z745 1585 aa20.38■□□□□ 0.85
VMP1-207ENST00000588131 SMARCA4P51532 1647 aa20.37■□□□□ 0.85
VMP1-207ENST00000588131 RSF1Q96T23 1441 aaPredicted RBP20.35■□□□□ 0.85
VMP1-207ENST00000588131 SUPT5HO00267 1087 aaKnown RBP20.3■□□□□ 0.84
VMP1-207ENST00000588131 EIF4G1Q04637 1599 aaKnown RBP20.28■□□□□ 0.84
VMP1-207ENST00000588131 WIZO95785 1651 aa20.22■□□□□ 0.83
VMP1-207ENST00000588131 PEG3Q9GZU2 1588 aa20.12■□□□□ 0.81
VMP1-207ENST00000588131 ATAD2BQ9ULI0 1458 aa20.09■□□□□ 0.81
VMP1-207ENST00000588131 CC2D2AQ9P2K1 1620 aa20.05■□□□□ 0.8
VMP1-207ENST00000588131 SMARCA2P51531 1590 aa20.05■□□□□ 0.8
VMP1-207ENST00000588131 TOP2AP11388 1531 aaKnown RBP19.99■□□□□ 0.79
VMP1-207ENST00000588131 NCAPD3P42695 1498 aa19.95■□□□□ 0.78
VMP1-207ENST00000588131 BAZ1BQ9UIG0 1483 aaKnown RBP19.94■□□□□ 0.78
VMP1-207ENST00000588131 DNAJC5BQ9UF47 199 aa19.94■□□□□ 0.78
VMP1-207ENST00000588131 HMGXB3Q12766 1538 aa19.92■□□□□ 0.78
VMP1-207ENST00000588131 CCDC88BA6NC98 1476 aa19.76■□□□□ 0.75
VMP1-207ENST00000588131 SENP3Q9H4L4 574 aaPredicted RBP19.59■□□□□ 0.73
VMP1-207ENST00000588131 CFTRP13569 1480 aa19.43■□□□□ 0.7
VMP1-207ENST00000588131 CADPSQ9ULU8 1353 aa19.41■□□□□ 0.7
VMP1-207ENST00000588131 PRDM2Q13029 1718 aa19.37■□□□□ 0.69
VMP1-207ENST00000588131 NESP48681 1621 aa19.36■□□□□ 0.69
VMP1-207ENST00000588131 LAMC3Q9Y6N6 1575 aa19.34■□□□□ 0.69
VMP1-207ENST00000588131 ABCC8Q09428 1581 aa19.27■□□□□ 0.67
VMP1-207ENST00000588131 PHF23Q9BUL5 403 aaPredicted RBP19.23■□□□□ 0.67
VMP1-207ENST00000588131 FANCD2Q9BXW9 1451 aa19.21■□□□□ 0.67
VMP1-207ENST00000588131 KIF21AQ7Z4S6 1674 aa19.16■□□□□ 0.66
VMP1-207ENST00000588131 PDS5BQ9NTI5 1447 aa19.16■□□□□ 0.66
VMP1-207ENST00000588131 WRNQ14191 1432 aaPredicted RBP eCLIP19.15■□□□□ 0.66
VMP1-207ENST00000588131 SYNJ1O43426 1573 aa19.13■□□□□ 0.65
VMP1-207ENST00000588131 CEP164Q9UPV0 1460 aa19.11■□□□□ 0.65
VMP1-207ENST00000588131 TRIM41Q8WV44 630 aa19.1■□□□□ 0.65
VMP1-207ENST00000588131 CUX1P39880 1505 aa19.09■□□□□ 0.65
VMP1-207ENST00000588131 BIVM-ERCC5R4GMW8 1640 aa19.07■□□□□ 0.64
VMP1-207ENST00000588131 TOP2BQ02880 1626 aa19.06■□□□□ 0.64
VMP1-207ENST00000588131 URB2Q14146 1524 aaKnown RBP19■□□□□ 0.63
VMP1-207ENST00000588131 DNMBPQ6XZF7 1577 aa19■□□□□ 0.63
VMP1-207ENST00000588131 ERCC6Q03468 1493 aa18.99■□□□□ 0.63
VMP1-207ENST00000588131 TOPBP1Q92547 1522 aa18.98■□□□□ 0.63
VMP1-207ENST00000588131 MRC2Q9UBG0 1479 aa18.97■□□□□ 0.63
VMP1-207ENST00000588131 THOC2Q8NI27 1593 aaKnown RBP18.93■□□□□ 0.62
VMP1-207ENST00000588131 FGD5Q6ZNL6 1462 aa18.91■□□□□ 0.62
VMP1-207ENST00000588131 WDR62O43379 1518 aa18.9■□□□□ 0.62
VMP1-207ENST00000588131 POLA1P09884 1462 aaPredicted RBP18.86■□□□□ 0.61
VMP1-207ENST00000588131 SOGA1O94964 1423 aa18.83■□□□□ 0.6
VMP1-207ENST00000588131 RAD54L2Q9Y4B4 1467 aa18.8■□□□□ 0.6
VMP1-207ENST00000588131 RUSC2Q8N2Y8 1516 aa18.79■□□□□ 0.6
VMP1-207ENST00000588131 DNAJC5Q9H3Z4 198 aa18.78■□□□□ 0.6
VMP1-207ENST00000588131 FAM9AQ8IZU1 332 aaPredicted RBP18.76■□□□□ 0.59
VMP1-207ENST00000588131 CUX2O14529 1486 aa18.76■□□□□ 0.59
VMP1-207ENST00000588131 WDR97A6NE52 1622 aa18.75■□□□□ 0.59
VMP1-207ENST00000588131 TARBP1Q13395 1621 aaKnown RBP18.74■□□□□ 0.59
VMP1-207ENST00000588131 ABCA10Q8WWZ4 1543 aa18.73■□□□□ 0.59
VMP1-207ENST00000588131 EEA1Q15075 1411 aa18.7■□□□□ 0.58
VMP1-207ENST00000588131 KIF27Q86VH2 1401 aa18.67■□□□□ 0.58
VMP1-207ENST00000588131 IFT140Q96RY7 1462 aa18.67■□□□□ 0.58
VMP1-207ENST00000588131 ABCA5Q8WWZ7 1642 aa18.63■□□□□ 0.57
VMP1-207ENST00000588131 TDRD9Q8NDG6 1382 aaKnown RBP18.61■□□□□ 0.57
VMP1-207ENST00000588131 CSRNP3Q8WYN3 585 aa18.61■□□□□ 0.57
VMP1-207ENST00000588131 ZNF608Q9ULD9 1512 aaPredicted RBP18.6■□□□□ 0.57
VMP1-207ENST00000588131 GAPVD1Q14C86 1478 aa18.57■□□□□ 0.56
VMP1-207ENST00000588131 AQRO60306 1485 aaKnown RBP eCLIP18.56■□□□□ 0.56
VMP1-207ENST00000588131 EIF4G3O43432 1585 aaKnown RBP18.55■□□□□ 0.56
VMP1-207ENST00000588131 IGF1RP08069 1367 aa18.55■□□□□ 0.56
VMP1-207ENST00000588131 PBRM1Q86U86 1689 aa18.54■□□□□ 0.56
VMP1-207ENST00000588131 LOC105371045A0A1W2PR82 267 aa18.54■□□□□ 0.56
VMP1-207ENST00000588131 KIF21BO75037 1637 aa18.52■□□□□ 0.56
VMP1-207ENST00000588131 PRXQ9BXM0 1461 aa18.51■□□□□ 0.55
VMP1-207ENST00000588131 ERICH3Q5RHP9 1530 aa18.5■□□□□ 0.55
VMP1-207ENST00000588131 EHMT2Q96KQ7 1210 aa18.5■□□□□ 0.55
VMP1-207ENST00000588131 GRIN2BQ13224 1484 aa18.47■□□□□ 0.55
VMP1-207ENST00000588131 CUL7Q14999 1698 aa18.47■□□□□ 0.55
VMP1-207ENST00000588131 GOLGA3Q08378 1498 aa18.46■□□□□ 0.54
VMP1-207ENST00000588131 RAPGEF2Q9Y4G8 1499 aa18.46■□□□□ 0.54
VMP1-207ENST00000588131 CARMIL1Q5VZK9 1371 aa18.43■□□□□ 0.54
VMP1-207ENST00000588131 ADAMTS12P58397 1594 aa18.42■□□□□ 0.54
VMP1-207ENST00000588131 SNAPC4Q5SXM2 1469 aa18.4■□□□□ 0.54
VMP1-207ENST00000588131 FHAD1B1AJZ9 1412 aa18.36■□□□□ 0.53
VMP1-207ENST00000588131 MAGI1Q96QZ7 1491 aaPredicted RBP18.35■□□□□ 0.53
VMP1-207ENST00000588131 UBTFP17480 764 aaKnown RBP18.33■□□□□ 0.52
VMP1-207ENST00000588131 TNIKQ9UKE5 1360 aa18.32■□□□□ 0.52
VMP1-207ENST00000588131 SYNJ2O15056 1496 aa18.28■□□□□ 0.52
VMP1-207ENST00000588131 GRIN2AQ12879 1464 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms