RNA–Protein interactions for RNA: ENST00000588055.1

SDHDP1-201, Transcript of succinate dehydrogenase complex subunit D pseudogene 1, humanhuman

BASIC

Gene SDHDP1, Length 474 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDHDP1-201ENST00000588055 NISCHQ9Y2I1 1504 aa28.48■■■□□ 2.15
SDHDP1-201ENST00000588055 CCDC180Q9P1Z9 1646 aa25.35■■□□□ 1.65
SDHDP1-201ENST00000588055 ABCC9O60706 1549 aa24.56■■□□□ 1.52
SDHDP1-201ENST00000588055 ZCCHC6Q5VYS8 1495 aaKnown RBP23.78■■□□□ 1.4
SDHDP1-201ENST00000588055 RB1CC1Q8TDY2 1594 aa23.77■■□□□ 1.4
SDHDP1-201ENST00000588055 NACADO15069 1562 aa23.75■■□□□ 1.39
SDHDP1-201ENST00000588055 DCAF8L2P0C7V8 631 aa23.71■■□□□ 1.39
SDHDP1-201ENST00000588055 MYO15BQ96JP2 1530 aa23.64■■□□□ 1.38
SDHDP1-201ENST00000588055 DCAF1Q9Y4B6 1507 aa23.59■■□□□ 1.37
SDHDP1-201ENST00000588055 UNC13AQ9UPW8 1703 aa23.18■■□□□ 1.3
SDHDP1-201ENST00000588055 SCRIBQ14160 1630 aa23.11■■□□□ 1.29
SDHDP1-201ENST00000588055 BICRAQ9NZM4 1560 aa22.93■■□□□ 1.26
SDHDP1-201ENST00000588055 PABPN1Q86U42 306 aaKnown RBP eCLIP22.91■■□□□ 1.26
SDHDP1-201ENST00000588055 SHROOM4Q9ULL8 1493 aa22.85■■□□□ 1.25
SDHDP1-201ENST00000588055 EIF4G1Q04637 1599 aaKnown RBP22.38■■□□□ 1.17
SDHDP1-201ENST00000588055 CC2D2AQ9P2K1 1620 aa22.24■■□□□ 1.15
SDHDP1-201ENST00000588055 DNAJC5BQ9UF47 199 aa22.22■■□□□ 1.15
SDHDP1-201ENST00000588055 BAZ1AQ9NRL2 1556 aaPredicted RBP22.12■■□□□ 1.13
SDHDP1-201ENST00000588055 CECR2Q9BXF3 1484 aa22.1■■□□□ 1.13
SDHDP1-201ENST00000588055 SMARCA4P51532 1647 aa22.1■■□□□ 1.13
SDHDP1-201ENST00000588055 SMARCA2P51531 1590 aa21.96■■□□□ 1.11
SDHDP1-201ENST00000588055 MROH2BQ7Z745 1585 aa21.92■■□□□ 1.1
SDHDP1-201ENST00000588055 ATAD2BQ9ULI0 1458 aa21.9■■□□□ 1.1
SDHDP1-201ENST00000588055 PEG3Q9GZU2 1588 aa21.87■■□□□ 1.09
SDHDP1-201ENST00000588055 NCAPD3P42695 1498 aa21.84■■□□□ 1.09
SDHDP1-201ENST00000588055 HMGXB3Q12766 1538 aa21.84■■□□□ 1.09
SDHDP1-201ENST00000588055 BAZ1BQ9UIG0 1483 aaKnown RBP21.8■■□□□ 1.08
SDHDP1-201ENST00000588055 WIZO95785 1651 aa21.72■■□□□ 1.07
SDHDP1-201ENST00000588055 RSF1Q96T23 1441 aaPredicted RBP21.72■■□□□ 1.07
SDHDP1-201ENST00000588055 TOP2AP11388 1531 aaKnown RBP21.55■■□□□ 1.04
SDHDP1-201ENST00000588055 LAMC3Q9Y6N6 1575 aa21.33■■□□□ 1.01
SDHDP1-201ENST00000588055 SUPT5HO00267 1087 aaKnown RBP21.3■■□□□ 1
SDHDP1-201ENST00000588055 NESP48681 1621 aa21.26■□□□□ 0.99
SDHDP1-201ENST00000588055 ERCC6Q03468 1493 aa21.25■□□□□ 0.99
SDHDP1-201ENST00000588055 CADPSQ9ULU8 1353 aa21.23■□□□□ 0.99
SDHDP1-201ENST00000588055 CCDC88BA6NC98 1476 aa21.22■□□□□ 0.99
SDHDP1-201ENST00000588055 PDS5BQ9NTI5 1447 aa21.17■□□□□ 0.98
SDHDP1-201ENST00000588055 CFTRP13569 1480 aa21.14■□□□□ 0.98
SDHDP1-201ENST00000588055 PRDM2Q13029 1718 aa21.12■□□□□ 0.97
SDHDP1-201ENST00000588055 KIF21AQ7Z4S6 1674 aa21.1■□□□□ 0.97
SDHDP1-201ENST00000588055 CEP164Q9UPV0 1460 aa21.03■□□□□ 0.96
SDHDP1-201ENST00000588055 FANCD2Q9BXW9 1451 aa21.02■□□□□ 0.96
SDHDP1-201ENST00000588055 THOC2Q8NI27 1593 aaKnown RBP20.98■□□□□ 0.95
SDHDP1-201ENST00000588055 MRC2Q9UBG0 1479 aa20.94■□□□□ 0.94
SDHDP1-201ENST00000588055 CUX2O14529 1486 aa20.94■□□□□ 0.94
SDHDP1-201ENST00000588055 WDR62O43379 1518 aa20.86■□□□□ 0.93
SDHDP1-201ENST00000588055 URB2Q14146 1524 aaKnown RBP20.77■□□□□ 0.92
SDHDP1-201ENST00000588055 ABCC8Q09428 1581 aa20.76■□□□□ 0.91
SDHDP1-201ENST00000588055 DNMBPQ6XZF7 1577 aa20.73■□□□□ 0.91
SDHDP1-201ENST00000588055 TOPBP1Q92547 1522 aa20.69■□□□□ 0.9
SDHDP1-201ENST00000588055 CUX1P39880 1505 aa20.58■□□□□ 0.89
SDHDP1-201ENST00000588055 IFT140Q96RY7 1462 aa20.56■□□□□ 0.88
SDHDP1-201ENST00000588055 WRNQ14191 1432 aaPredicted RBP eCLIP20.53■□□□□ 0.88
SDHDP1-201ENST00000588055 POLA1P09884 1462 aaPredicted RBP20.53■□□□□ 0.88
SDHDP1-201ENST00000588055 FGD5Q6ZNL6 1462 aa20.51■□□□□ 0.87
SDHDP1-201ENST00000588055 BIVM-ERCC5R4GMW8 1640 aa20.49■□□□□ 0.87
SDHDP1-201ENST00000588055 TOP2BQ02880 1626 aa20.49■□□□□ 0.87
SDHDP1-201ENST00000588055 SYNJ1O43426 1573 aa20.46■□□□□ 0.87
SDHDP1-201ENST00000588055 TARBP1Q13395 1621 aaKnown RBP20.45■□□□□ 0.86
SDHDP1-201ENST00000588055 SOGA1O94964 1423 aa20.43■□□□□ 0.86
SDHDP1-201ENST00000588055 EIF4G3O43432 1585 aaKnown RBP20.41■□□□□ 0.86
SDHDP1-201ENST00000588055 WDR97A6NE52 1622 aa20.4■□□□□ 0.86
SDHDP1-201ENST00000588055 RAD54L2Q9Y4B4 1467 aa20.39■□□□□ 0.85
SDHDP1-201ENST00000588055 ZNF608Q9ULD9 1512 aaPredicted RBP20.37■□□□□ 0.85
SDHDP1-201ENST00000588055 ABCA10Q8WWZ4 1543 aa20.32■□□□□ 0.84
SDHDP1-201ENST00000588055 AQRO60306 1485 aaKnown RBP eCLIP20.28■□□□□ 0.84
SDHDP1-201ENST00000588055 TDRD9Q8NDG6 1382 aaKnown RBP20.27■□□□□ 0.84
SDHDP1-201ENST00000588055 ABCA5Q8WWZ7 1642 aa20.25■□□□□ 0.83
SDHDP1-201ENST00000588055 PBRM1Q86U86 1689 aa20.23■□□□□ 0.83
SDHDP1-201ENST00000588055 GAPVD1Q14C86 1478 aa20.23■□□□□ 0.83
SDHDP1-201ENST00000588055 GRIN2BQ13224 1484 aa20.22■□□□□ 0.83
SDHDP1-201ENST00000588055 SNAPC4Q5SXM2 1469 aa20.17■□□□□ 0.82
SDHDP1-201ENST00000588055 MAGI1Q96QZ7 1491 aaPredicted RBP20.17■□□□□ 0.82
SDHDP1-201ENST00000588055 TRIM41Q8WV44 630 aa20.14■□□□□ 0.81
SDHDP1-201ENST00000588055 KIF27Q86VH2 1401 aa20.11■□□□□ 0.81
SDHDP1-201ENST00000588055 ERICH3Q5RHP9 1530 aa20.11■□□□□ 0.81
SDHDP1-201ENST00000588055 CHD1O14646 1710 aa20.1■□□□□ 0.81
SDHDP1-201ENST00000588055 SYNJ2O15056 1496 aa20.07■□□□□ 0.8
SDHDP1-201ENST00000588055 ADAMTS12P58397 1594 aa20.07■□□□□ 0.8
SDHDP1-201ENST00000588055 FBLN2P98095 1184 aa20.06■□□□□ 0.8
SDHDP1-201ENST00000588055 OSCARQ8IYS5 282 aa20.02■□□□□ 0.8
SDHDP1-201ENST00000588055 CHMP7Q8WUX9 453 aaPredicted RBP20.02■□□□□ 0.8
SDHDP1-201ENST00000588055 CUL7Q14999 1698 aa20.01■□□□□ 0.79
SDHDP1-201ENST00000588055 FHAD1B1AJZ9 1412 aa20.01■□□□□ 0.79
SDHDP1-201ENST00000588055 DNAJC5Q9H3Z4 198 aa19.97■□□□□ 0.79
SDHDP1-201ENST00000588055 GRIN2AQ12879 1464 aa19.95■□□□□ 0.78
SDHDP1-201ENST00000588055 CHIC1Q5VXU3 224 aa19.91■□□□□ 0.78
SDHDP1-201ENST00000588055 IGF1RP08069 1367 aa19.9■□□□□ 0.78
SDHDP1-201ENST00000588055 EEA1Q15075 1411 aa19.86■□□□□ 0.77
SDHDP1-201ENST00000588055 CLASP1Q7Z460 1538 aa19.86■□□□□ 0.77
SDHDP1-201ENST00000588055 RUSC2Q8N2Y8 1516 aa19.86■□□□□ 0.77
SDHDP1-201ENST00000588055 CARMIL1Q5VZK9 1371 aa19.84■□□□□ 0.77
SDHDP1-201ENST00000588055 CEP170Q5SW79 1584 aa19.83■□□□□ 0.77
SDHDP1-201ENST00000588055 NUP160Q12769 1436 aa19.83■□□□□ 0.76
SDHDP1-201ENST00000588055 RAPGEF2Q9Y4G8 1499 aa19.79■□□□□ 0.76
SDHDP1-201ENST00000588055 ARHGEF11O15085 1522 aa19.74■□□□□ 0.75
SDHDP1-201ENST00000588055 RIMBP3CA6NJZ7 1639 aa19.73■□□□□ 0.75
SDHDP1-201ENST00000588055 RIMBP3BA6NNM3 1639 aa19.73■□□□□ 0.75
SDHDP1-201ENST00000588055 RIMBP3Q9UFD9 1639 aa19.73■□□□□ 0.75
SDHDP1-201ENST00000588055 PRXQ9BXM0 1461 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms