RNA–Protein interactions for RNA: ENST00000587223.1

NPC1-206, Transcript of NPC intracellular cholesterol transporter 1, humanhuman

TSL 4

Gene NPC1, Length 590 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1-206ENST00000587223 NISCHQ9Y2I1 1504 aa15.61■□□□□ 0.09
NPC1-206ENST00000587223 CHIC1Q5VXU3 224 aa13.86□□□□□ -0.19
NPC1-206ENST00000587223 AEBP2Q6ZN18 517 aaPredicted RBP13.81□□□□□ -0.2
NPC1-206ENST00000587223 CCDC180Q9P1Z9 1646 aa13.8□□□□□ -0.2
NPC1-206ENST00000587223 ABCC9O60706 1549 aa13.52□□□□□ -0.25
NPC1-206ENST00000587223 DCAF8L2P0C7V8 631 aa13.18□□□□□ -0.3
NPC1-206ENST00000587223 NACADO15069 1562 aa13.01□□□□□ -0.33
NPC1-206ENST00000587223 RB1CC1Q8TDY2 1594 aa13.01□□□□□ -0.33
NPC1-206ENST00000587223 ZCCHC6Q5VYS8 1495 aaKnown RBP12.98□□□□□ -0.33
NPC1-206ENST00000587223 MYO15BQ96JP2 1530 aa12.93□□□□□ -0.34
NPC1-206ENST00000587223 DCAF1Q9Y4B6 1507 aa12.89□□□□□ -0.35
NPC1-206ENST00000587223 PABPN1Q86U42 306 aaKnown RBP eCLIP12.71□□□□□ -0.37
NPC1-206ENST00000587223 UNC13AQ9UPW8 1703 aa12.67□□□□□ -0.38
NPC1-206ENST00000587223 SCRIBQ14160 1630 aa12.63□□□□□ -0.39
NPC1-206ENST00000587223 BICRAQ9NZM4 1560 aa12.58□□□□□ -0.4
NPC1-206ENST00000587223 SHROOM4Q9ULL8 1493 aa12.44□□□□□ -0.42
NPC1-206ENST00000587223 DNAJC5BQ9UF47 199 aa12.39□□□□□ -0.43
NPC1-206ENST00000587223 EIF4G1Q04637 1599 aaKnown RBP12.26□□□□□ -0.45
NPC1-206ENST00000587223 PHF23Q9BUL5 403 aaPredicted RBP12.24□□□□□ -0.45
NPC1-206ENST00000587223 CC2D2AQ9P2K1 1620 aa12.2□□□□□ -0.46
NPC1-206ENST00000587223 CECR2Q9BXF3 1484 aa12.17□□□□□ -0.46
NPC1-206ENST00000587223 BAZ1AQ9NRL2 1556 aaPredicted RBP12.09□□□□□ -0.47
NPC1-206ENST00000587223 SMARCA4P51532 1647 aa12.08□□□□□ -0.48
NPC1-206ENST00000587223 MROH2BQ7Z745 1585 aa12.04□□□□□ -0.48
NPC1-206ENST00000587223 ATAD2BQ9ULI0 1458 aa12.02□□□□□ -0.48
NPC1-206ENST00000587223 NCAPD3P42695 1498 aa12.02□□□□□ -0.49
NPC1-206ENST00000587223 SMARCA2P51531 1590 aa12.01□□□□□ -0.49
NPC1-206ENST00000587223 PEG3Q9GZU2 1588 aa11.94□□□□□ -0.5
NPC1-206ENST00000587223 BAZ1BQ9UIG0 1483 aaKnown RBP11.94□□□□□ -0.5
NPC1-206ENST00000587223 RSF1Q96T23 1441 aaPredicted RBP11.94□□□□□ -0.5
NPC1-206ENST00000587223 HMGXB3Q12766 1538 aa11.91□□□□□ -0.5
NPC1-206ENST00000587223 WIZO95785 1651 aa11.91□□□□□ -0.5
NPC1-206ENST00000587223 SUPT5HO00267 1087 aaKnown RBP11.79□□□□□ -0.52
NPC1-206ENST00000587223 TOP2AP11388 1531 aaKnown RBP11.77□□□□□ -0.52
NPC1-206ENST00000587223 NESP48681 1621 aa11.71□□□□□ -0.54
NPC1-206ENST00000587223 CADPSQ9ULU8 1353 aa11.69□□□□□ -0.54
NPC1-206ENST00000587223 CCDC88BA6NC98 1476 aa11.67□□□□□ -0.54
NPC1-206ENST00000587223 LAMC3Q9Y6N6 1575 aa11.67□□□□□ -0.54
NPC1-206ENST00000587223 ERCC6Q03468 1493 aa11.66□□□□□ -0.54
NPC1-206ENST00000587223 PDS5BQ9NTI5 1447 aa11.64□□□□□ -0.55
NPC1-206ENST00000587223 SENP3Q9H4L4 574 aaPredicted RBP11.64□□□□□ -0.55
NPC1-206ENST00000587223 CFTRP13569 1480 aa11.61□□□□□ -0.55
NPC1-206ENST00000587223 FANCD2Q9BXW9 1451 aa11.54□□□□□ -0.56
NPC1-206ENST00000587223 KIF21AQ7Z4S6 1674 aa11.53□□□□□ -0.56
NPC1-206ENST00000587223 CEP164Q9UPV0 1460 aa11.51□□□□□ -0.57
NPC1-206ENST00000587223 CUX2O14529 1486 aa11.48□□□□□ -0.57
NPC1-206ENST00000587223 MRC2Q9UBG0 1479 aa11.48□□□□□ -0.57
NPC1-206ENST00000587223 PRDM2Q13029 1718 aa11.46□□□□□ -0.57
NPC1-206ENST00000587223 THOC2Q8NI27 1593 aaKnown RBP11.45□□□□□ -0.58
NPC1-206ENST00000587223 PLPPR3Q6T4P5 718 aa11.43□□□□□ -0.58
NPC1-206ENST00000587223 WDR62O43379 1518 aa11.41□□□□□ -0.58
NPC1-206ENST00000587223 URB2Q14146 1524 aaKnown RBP11.4□□□□□ -0.58
NPC1-206ENST00000587223 ABCC8Q09428 1581 aa11.38□□□□□ -0.59
NPC1-206ENST00000587223 TOPBP1Q92547 1522 aa11.35□□□□□ -0.59
NPC1-206ENST00000587223 DNMBPQ6XZF7 1577 aa11.33□□□□□ -0.6
NPC1-206ENST00000587223 CUX1P39880 1505 aa11.28□□□□□ -0.6
NPC1-206ENST00000587223 IFT140Q96RY7 1462 aa11.27□□□□□ -0.6
NPC1-206ENST00000587223 SOGA1O94964 1423 aa11.26□□□□□ -0.61
NPC1-206ENST00000587223 WRNQ14191 1432 aaPredicted RBP eCLIP11.26□□□□□ -0.61
NPC1-206ENST00000587223 POLA1P09884 1462 aaPredicted RBP11.25□□□□□ -0.61
NPC1-206ENST00000587223 FGD5Q6ZNL6 1462 aa11.25□□□□□ -0.61
NPC1-206ENST00000587223 RAD54L2Q9Y4B4 1467 aa11.24□□□□□ -0.61
NPC1-206ENST00000587223 ZNF608Q9ULD9 1512 aaPredicted RBP11.21□□□□□ -0.61
NPC1-206ENST00000587223 TARBP1Q13395 1621 aaKnown RBP11.2□□□□□ -0.62
NPC1-206ENST00000587223 TDRD9Q8NDG6 1382 aaKnown RBP11.19□□□□□ -0.62
NPC1-206ENST00000587223 TOP2BQ02880 1626 aa11.19□□□□□ -0.62
NPC1-206ENST00000587223 SYNJ1O43426 1573 aa11.19□□□□□ -0.62
NPC1-206ENST00000587223 AQRO60306 1485 aaKnown RBP eCLIP11.19□□□□□ -0.62
NPC1-206ENST00000587223 BIVM-ERCC5R4GMW8 1640 aa11.17□□□□□ -0.62
NPC1-206ENST00000587223 EIF4G3O43432 1585 aaKnown RBP11.13□□□□□ -0.63
NPC1-206ENST00000587223 TRIM41Q8WV44 630 aa11.13□□□□□ -0.63
NPC1-206ENST00000587223 ABCA10Q8WWZ4 1543 aa11.13□□□□□ -0.63
NPC1-206ENST00000587223 FBLN2P98095 1184 aa11.12□□□□□ -0.63
NPC1-206ENST00000587223 DNAJC5Q9H3Z4 198 aa11.12□□□□□ -0.63
NPC1-206ENST00000587223 OSCARQ8IYS5 282 aa11.11□□□□□ -0.63
NPC1-206ENST00000587223 GAPVD1Q14C86 1478 aa11.11□□□□□ -0.63
NPC1-206ENST00000587223 WDR97A6NE52 1622 aa11.1□□□□□ -0.63
NPC1-206ENST00000587223 GRIN2BQ13224 1484 aa11.09□□□□□ -0.63
NPC1-206ENST00000587223 CHMP7Q8WUX9 453 aaPredicted RBP11.08□□□□□ -0.64
NPC1-206ENST00000587223 SNAPC4Q5SXM2 1469 aa11.06□□□□□ -0.64
NPC1-206ENST00000587223 KIF27Q86VH2 1401 aa11.04□□□□□ -0.64
NPC1-206ENST00000587223 ABCA5Q8WWZ7 1642 aa11.04□□□□□ -0.64
NPC1-206ENST00000587223 MAGI1Q96QZ7 1491 aaPredicted RBP11.04□□□□□ -0.64
NPC1-206ENST00000587223 PBRM1Q86U86 1689 aa11.02□□□□□ -0.64
NPC1-206ENST00000587223 SYNJ2O15056 1496 aa11□□□□□ -0.65
NPC1-206ENST00000587223 ERICH3Q5RHP9 1530 aa10.99□□□□□ -0.65
NPC1-206ENST00000587223 IGF1RP08069 1367 aa10.99□□□□□ -0.65
NPC1-206ENST00000587223 CHD1O14646 1710 aa10.98□□□□□ -0.65
NPC1-206ENST00000587223 FHAD1B1AJZ9 1412 aa10.98□□□□□ -0.65
NPC1-206ENST00000587223 RUSC2Q8N2Y8 1516 aa10.94□□□□□ -0.66
NPC1-206ENST00000587223 CARMIL1Q5VZK9 1371 aa10.94□□□□□ -0.66
NPC1-206ENST00000587223 ADAMTS12P58397 1594 aa10.94□□□□□ -0.66
NPC1-206ENST00000587223 GRIN2AQ12879 1464 aa10.93□□□□□ -0.66
NPC1-206ENST00000587223 FAM9AQ8IZU1 332 aaPredicted RBP10.91□□□□□ -0.66
NPC1-206ENST00000587223 CSRNP3Q8WYN3 585 aa10.9□□□□□ -0.66
NPC1-206ENST00000587223 CUL7Q14999 1698 aa10.89□□□□□ -0.67
NPC1-206ENST00000587223 NUP160Q12769 1436 aa10.87□□□□□ -0.67
NPC1-206ENST00000587223 CLASP1Q7Z460 1538 aa10.86□□□□□ -0.67
NPC1-206ENST00000587223 RAPGEF2Q9Y4G8 1499 aa10.86□□□□□ -0.67
NPC1-206ENST00000587223 CEP170Q5SW79 1584 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms