RNA–Protein interactions for RNA: ENST00000586870.5

RETREG3-205, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 2

Gene RETREG3, Length 1,632 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-205ENST00000586870 NISCHQ9Y2I1 1504 aa42.74■■■■■ 4.43
RETREG3-205ENST00000586870 CCDC180Q9P1Z9 1646 aa37.78■■■■□ 3.64
RETREG3-205ENST00000586870 ABCC9O60706 1549 aa37■■■■□ 3.51
RETREG3-205ENST00000586870 DCAF8L2P0C7V8 631 aa35.97■■■■□ 3.35
RETREG3-205ENST00000586870 ZCCHC6Q5VYS8 1495 aaKnown RBP35.6■■■■□ 3.29
RETREG3-205ENST00000586870 RB1CC1Q8TDY2 1594 aa35.59■■■■□ 3.29
RETREG3-205ENST00000586870 NACADO15069 1562 aa35.58■■■■□ 3.29
RETREG3-205ENST00000586870 MYO15BQ96JP2 1530 aa35.38■■■■□ 3.25
RETREG3-205ENST00000586870 DCAF1Q9Y4B6 1507 aa35.31■■■■□ 3.24
RETREG3-205ENST00000586870 PABPN1Q86U42 306 aaKnown RBP eCLIP34.7■■■■□ 3.15
RETREG3-205ENST00000586870 SCRIBQ14160 1630 aa34.62■■■■□ 3.13
RETREG3-205ENST00000586870 UNC13AQ9UPW8 1703 aa34.58■■■■□ 3.13
RETREG3-205ENST00000586870 BICRAQ9NZM4 1560 aa34.41■■■■□ 3.1
RETREG3-205ENST00000586870 SHROOM4Q9ULL8 1493 aa34.11■■■■□ 3.05
RETREG3-205ENST00000586870 DNAJC5BQ9UF47 199 aa34■■■■□ 3.03
RETREG3-205ENST00000586870 EIF4G1Q04637 1599 aaKnown RBP33.56■■■□□ 2.96
RETREG3-205ENST00000586870 CC2D2AQ9P2K1 1620 aa33.37■■■□□ 2.93
RETREG3-205ENST00000586870 CECR2Q9BXF3 1484 aa33.29■■■□□ 2.92
RETREG3-205ENST00000586870 BAZ1AQ9NRL2 1556 aaPredicted RBP33.12■■■□□ 2.89
RETREG3-205ENST00000586870 SMARCA4P51532 1647 aa33.07■■■□□ 2.88
RETREG3-205ENST00000586870 MROH2BQ7Z745 1585 aa32.94■■■□□ 2.86
RETREG3-205ENST00000586870 ATAD2BQ9ULI0 1458 aa32.91■■■□□ 2.86
RETREG3-205ENST00000586870 SMARCA2P51531 1590 aa32.88■■■□□ 2.85
RETREG3-205ENST00000586870 NCAPD3P42695 1498 aa32.87■■■□□ 2.85
RETREG3-205ENST00000586870 PEG3Q9GZU2 1588 aa32.7■■■□□ 2.83
RETREG3-205ENST00000586870 BAZ1BQ9UIG0 1483 aaKnown RBP32.7■■■□□ 2.82
RETREG3-205ENST00000586870 RSF1Q96T23 1441 aaPredicted RBP32.68■■■□□ 2.82
RETREG3-205ENST00000586870 HMGXB3Q12766 1538 aa32.66■■■□□ 2.82
RETREG3-205ENST00000586870 WIZO95785 1651 aa32.56■■■□□ 2.8
RETREG3-205ENST00000586870 SUPT5HO00267 1087 aaKnown RBP32.36■■■□□ 2.77
RETREG3-205ENST00000586870 TOP2AP11388 1531 aaKnown RBP32.24■■■□□ 2.75
RETREG3-205ENST00000586870 NESP48681 1621 aa32.02■■■□□ 2.72
RETREG3-205ENST00000586870 CADPSQ9ULU8 1353 aa31.98■■■□□ 2.71
RETREG3-205ENST00000586870 CCDC88BA6NC98 1476 aa31.93■■■□□ 2.7
RETREG3-205ENST00000586870 ERCC6Q03468 1493 aa31.93■■■□□ 2.7
RETREG3-205ENST00000586870 LAMC3Q9Y6N6 1575 aa31.93■■■□□ 2.7
RETREG3-205ENST00000586870 PDS5BQ9NTI5 1447 aa31.84■■■□□ 2.69
RETREG3-205ENST00000586870 CFTRP13569 1480 aa31.77■■■□□ 2.68
RETREG3-205ENST00000586870 FANCD2Q9BXW9 1451 aa31.59■■■□□ 2.65
RETREG3-205ENST00000586870 CEP164Q9UPV0 1460 aa31.53■■■□□ 2.64
RETREG3-205ENST00000586870 KIF21AQ7Z4S6 1674 aa31.52■■■□□ 2.64
RETREG3-205ENST00000586870 CUX2O14529 1486 aa31.48■■■□□ 2.63
RETREG3-205ENST00000586870 MRC2Q9UBG0 1479 aa31.42■■■□□ 2.62
RETREG3-205ENST00000586870 THOC2Q8NI27 1593 aaKnown RBP31.37■■■□□ 2.61
RETREG3-205ENST00000586870 PRDM2Q13029 1718 aa31.33■■■□□ 2.61
RETREG3-205ENST00000586870 WDR62O43379 1518 aa31.24■■■□□ 2.59
RETREG3-205ENST00000586870 CHIC1Q5VXU3 224 aa31.24■■■□□ 2.59
RETREG3-205ENST00000586870 URB2Q14146 1524 aaKnown RBP31.2■■■□□ 2.58
RETREG3-205ENST00000586870 ABCC8Q09428 1581 aa31.12■■■□□ 2.57
RETREG3-205ENST00000586870 TOPBP1Q92547 1522 aa31.07■■■□□ 2.56
RETREG3-205ENST00000586870 DNMBPQ6XZF7 1577 aa31.02■■■□□ 2.56
RETREG3-205ENST00000586870 DNAJC5Q9H3Z4 198 aa30.88■■■□□ 2.53
RETREG3-205ENST00000586870 CUX1P39880 1505 aa30.88■■■□□ 2.53
RETREG3-205ENST00000586870 IFT140Q96RY7 1462 aa30.87■■■□□ 2.53
RETREG3-205ENST00000586870 WRNQ14191 1432 aaPredicted RBP eCLIP30.85■■■□□ 2.53
RETREG3-205ENST00000586870 POLA1P09884 1462 aaPredicted RBP30.82■■■□□ 2.52
RETREG3-205ENST00000586870 SOGA1O94964 1423 aa30.8■■■□□ 2.52
RETREG3-205ENST00000586870 FGD5Q6ZNL6 1462 aa30.79■■■□□ 2.52
RETREG3-205ENST00000586870 RAD54L2Q9Y4B4 1467 aa30.73■■■□□ 2.51
RETREG3-205ENST00000586870 ZNF608Q9ULD9 1512 aaPredicted RBP30.68■■■□□ 2.5
RETREG3-205ENST00000586870 TOP2BQ02880 1626 aa30.65■■■□□ 2.5
RETREG3-205ENST00000586870 SYNJ1O43426 1573 aa30.64■■■□□ 2.5
RETREG3-205ENST00000586870 TARBP1Q13395 1621 aaKnown RBP30.63■■■□□ 2.49
RETREG3-205ENST00000586870 TDRD9Q8NDG6 1382 aaKnown RBP30.62■■■□□ 2.49
RETREG3-205ENST00000586870 AQRO60306 1485 aaKnown RBP eCLIP30.59■■■□□ 2.495e-6■■■□□ 18.1
RETREG3-205ENST00000586870 BIVM-ERCC5R4GMW8 1640 aa30.58■■■□□ 2.49
RETREG3-205ENST00000586870 EIF4G3O43432 1585 aaKnown RBP30.49■■■□□ 2.47
RETREG3-205ENST00000586870 ABCA10Q8WWZ4 1543 aa30.48■■■□□ 2.47
RETREG3-205ENST00000586870 TRIM41Q8WV44 630 aa30.43■■■□□ 2.46
RETREG3-205ENST00000586870 WDR97A6NE52 1622 aa30.4■■■□□ 2.46
RETREG3-205ENST00000586870 GAPVD1Q14C86 1478 aa30.4■■■□□ 2.46
RETREG3-205ENST00000586870 FBLN2P98095 1184 aa30.37■■■□□ 2.45
RETREG3-205ENST00000586870 GRIN2BQ13224 1484 aa30.36■■■□□ 2.45
RETREG3-205ENST00000586870 OSCARQ8IYS5 282 aa30.33■■■□□ 2.45
RETREG3-205ENST00000586870 CHMP7Q8WUX9 453 aaPredicted RBP30.28■■■□□ 2.44
RETREG3-205ENST00000586870 SNAPC4Q5SXM2 1469 aa30.28■■■□□ 2.44
RETREG3-205ENST00000586870 ABCA5Q8WWZ7 1642 aa30.25■■■□□ 2.43
RETREG3-205ENST00000586870 MAGI1Q96QZ7 1491 aaPredicted RBP30.23■■■□□ 2.43
RETREG3-205ENST00000586870 KIF27Q86VH2 1401 aa30.22■■■□□ 2.43
RETREG3-205ENST00000586870 PBRM1Q86U86 1689 aa30.15■■■□□ 2.42
RETREG3-205ENST00000586870 SYNJ2O15056 1496 aa30.13■■■□□ 2.41
RETREG3-205ENST00000586870 ERICH3Q5RHP9 1530 aa30.11■■■□□ 2.41
RETREG3-205ENST00000586870 FHAD1B1AJZ9 1412 aa30.06■■■□□ 2.4
RETREG3-205ENST00000586870 IGF1RP08069 1367 aa30.06■■■□□ 2.4
RETREG3-205ENST00000586870 CHD1O14646 1710 aa30.03■■■□□ 2.4
RETREG3-205ENST00000586870 LOC105371045A0A1W2PR82 267 aa30.03■■■□□ 2.4
RETREG3-205ENST00000586870 ADAMTS12P58397 1594 aa29.98■■■□□ 2.39
RETREG3-205ENST00000586870 RUSC2Q8N2Y8 1516 aa29.94■■■□□ 2.38
RETREG3-205ENST00000586870 GRIN2AQ12879 1464 aa29.94■■■□□ 2.38
RETREG3-205ENST00000586870 CARMIL1Q5VZK9 1371 aa29.92■■■□□ 2.38
RETREG3-205ENST00000586870 FAM9AQ8IZU1 332 aaPredicted RBP29.84■■■□□ 2.37
RETREG3-205ENST00000586870 CUL7Q14999 1698 aa29.84■■■□□ 2.37
RETREG3-205ENST00000586870 CSRNP3Q8WYN3 585 aa29.78■■■□□ 2.36
RETREG3-205ENST00000586870 NUP160Q12769 1436 aa29.77■■■□□ 2.36
RETREG3-205ENST00000586870 EEA1Q15075 1411 aa29.75■■■□□ 2.35
RETREG3-205ENST00000586870 CLASP1Q7Z460 1538 aa29.74■■■□□ 2.35
RETREG3-205ENST00000586870 CEP170Q5SW79 1584 aa29.73■■■□□ 2.35
RETREG3-205ENST00000586870 RAPGEF2Q9Y4G8 1499 aa29.72■■■□□ 2.35
RETREG3-205ENST00000586870 RIMBP3CA6NJZ7 1639 aa29.71■■■□□ 2.35
RETREG3-205ENST00000586870 RIMBP3BA6NNM3 1639 aa29.71■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms