RNA–Protein interactions for RNA: ENST00000586833.5

TPM4-205, Transcript of tropomyosin 4, humanhuman

TSL 5

Gene TPM4, Length 558 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-205ENST00000586833 NISCHQ9Y2I1 1504 aa33.75■■■□□ 2.99
TPM4-205ENST00000586833 CCDC180Q9P1Z9 1646 aa29.91■■■□□ 2.38
TPM4-205ENST00000586833 ABCC9O60706 1549 aa29.24■■■□□ 2.27
TPM4-205ENST00000586833 DCAF8L2P0C7V8 631 aa28.31■■■□□ 2.12
TPM4-205ENST00000586833 RB1CC1Q8TDY2 1594 aa28.2■■■□□ 2.11
TPM4-205ENST00000586833 NACADO15069 1562 aa28.2■■■□□ 2.1
TPM4-205ENST00000586833 ZCCHC6Q5VYS8 1495 aaKnown RBP28.13■■■□□ 2.09
TPM4-205ENST00000586833 MYO15BQ96JP2 1530 aa28.08■■■□□ 2.09
TPM4-205ENST00000586833 DCAF1Q9Y4B6 1507 aa27.97■■■□□ 2.07
TPM4-205ENST00000586833 PABPN1Q86U42 306 aaKnown RBP eCLIP27.37■■□□□ 1.97
TPM4-205ENST00000586833 SCRIBQ14160 1630 aa27.3■■□□□ 1.96
TPM4-205ENST00000586833 UNC13AQ9UPW8 1703 aa27.23■■□□□ 1.95
TPM4-205ENST00000586833 BICRAQ9NZM4 1560 aa27.18■■□□□ 1.94
TPM4-205ENST00000586833 SHROOM4Q9ULL8 1493 aa27.15■■□□□ 1.94
TPM4-205ENST00000586833 DNAJC5BQ9UF47 199 aa26.66■■□□□ 1.86
TPM4-205ENST00000586833 EIF4G1Q04637 1599 aaKnown RBP26.55■■□□□ 1.84
TPM4-205ENST00000586833 CC2D2AQ9P2K1 1620 aa26.39■■□□□ 1.81
TPM4-205ENST00000586833 CECR2Q9BXF3 1484 aa26.3■■□□□ 1.8
TPM4-205ENST00000586833 BAZ1AQ9NRL2 1556 aaPredicted RBP26.2■■□□□ 1.78
TPM4-205ENST00000586833 SMARCA4P51532 1647 aa26.11■■□□□ 1.77
TPM4-205ENST00000586833 SMARCA2P51531 1590 aa26.04■■□□□ 1.76
TPM4-205ENST00000586833 ATAD2BQ9ULI0 1458 aa26.03■■□□□ 1.76
TPM4-205ENST00000586833 NCAPD3P42695 1498 aa26.02■■□□□ 1.76
TPM4-205ENST00000586833 MROH2BQ7Z745 1585 aa25.95■■□□□ 1.75
TPM4-205ENST00000586833 PEG3Q9GZU2 1588 aa25.88■■□□□ 1.73
TPM4-205ENST00000586833 HMGXB3Q12766 1538 aa25.88■■□□□ 1.73
TPM4-205ENST00000586833 BAZ1BQ9UIG0 1483 aaKnown RBP25.86■■□□□ 1.73
TPM4-205ENST00000586833 RSF1Q96T23 1441 aaPredicted RBP25.75■■□□□ 1.71
TPM4-205ENST00000586833 WIZO95785 1651 aa25.61■■□□□ 1.69
TPM4-205ENST00000586833 TOP2AP11388 1531 aaKnown RBP25.47■■□□□ 1.67
TPM4-205ENST00000586833 ERCC6Q03468 1493 aa25.31■■□□□ 1.64
TPM4-205ENST00000586833 CADPSQ9ULU8 1353 aa25.31■■□□□ 1.64
TPM4-205ENST00000586833 LAMC3Q9Y6N6 1575 aa25.3■■□□□ 1.64
TPM4-205ENST00000586833 SUPT5HO00267 1087 aaKnown RBP25.25■■□□□ 1.63
TPM4-205ENST00000586833 NESP48681 1621 aa25.25■■□□□ 1.63
TPM4-205ENST00000586833 PDS5BQ9NTI5 1447 aa25.24■■□□□ 1.63
TPM4-205ENST00000586833 CCDC88BA6NC98 1476 aa25.16■■□□□ 1.62
TPM4-205ENST00000586833 CFTRP13569 1480 aa25.13■■□□□ 1.61
TPM4-205ENST00000586833 CUX2O14529 1486 aa24.98■■□□□ 1.59
TPM4-205ENST00000586833 FANCD2Q9BXW9 1451 aa24.98■■□□□ 1.59
TPM4-205ENST00000586833 CEP164Q9UPV0 1460 aa24.96■■□□□ 1.59
TPM4-205ENST00000586833 MRC2Q9UBG0 1479 aa24.89■■□□□ 1.58
TPM4-205ENST00000586833 KIF21AQ7Z4S6 1674 aa24.87■■□□□ 1.57
TPM4-205ENST00000586833 THOC2Q8NI27 1593 aaKnown RBP24.83■■□□□ 1.57
TPM4-205ENST00000586833 WDR62O43379 1518 aa24.75■■□□□ 1.55
TPM4-205ENST00000586833 PRDM2Q13029 1718 aa24.74■■□□□ 1.55
TPM4-205ENST00000586833 ABCC8Q09428 1581 aa24.69■■□□□ 1.54
TPM4-205ENST00000586833 URB2Q14146 1524 aaKnown RBP24.64■■□□□ 1.53
TPM4-205ENST00000586833 TOPBP1Q92547 1522 aa24.55■■□□□ 1.52
TPM4-205ENST00000586833 DNMBPQ6XZF7 1577 aa24.54■■□□□ 1.52
TPM4-205ENST00000586833 IFT140Q96RY7 1462 aa24.46■■□□□ 1.51
TPM4-205ENST00000586833 POLA1P09884 1462 aaPredicted RBP24.35■■□□□ 1.49
TPM4-205ENST00000586833 CUX1P39880 1505 aa24.35■■□□□ 1.49
TPM4-205ENST00000586833 WRNQ14191 1432 aaPredicted RBP eCLIP24.35■■□□□ 1.49
TPM4-205ENST00000586833 SOGA1O94964 1423 aa24.33■■□□□ 1.49
TPM4-205ENST00000586833 FGD5Q6ZNL6 1462 aa24.31■■□□□ 1.48
TPM4-205ENST00000586833 RAD54L2Q9Y4B4 1467 aa24.22■■□□□ 1.47
TPM4-205ENST00000586833 ZNF608Q9ULD9 1512 aaPredicted RBP24.21■■□□□ 1.47
TPM4-205ENST00000586833 TOP2BQ02880 1626 aa24.18■■□□□ 1.46
TPM4-205ENST00000586833 TARBP1Q13395 1621 aaKnown RBP24.18■■□□□ 1.46
TPM4-205ENST00000586833 WDR97A6NE52 1622 aa24.15■■□□□ 1.46
TPM4-205ENST00000586833 TDRD9Q8NDG6 1382 aaKnown RBP24.14■■□□□ 1.45
TPM4-205ENST00000586833 BIVM-ERCC5R4GMW8 1640 aa24.13■■□□□ 1.45
TPM4-205ENST00000586833 AQRO60306 1485 aaKnown RBP eCLIP24.13■■□□□ 1.457e-7■■■■□ 20.3
TPM4-205ENST00000586833 SYNJ1O43426 1573 aa24.12■■□□□ 1.45
TPM4-205ENST00000586833 EIF4G3O43432 1585 aaKnown RBP24.11■■□□□ 1.45
TPM4-205ENST00000586833 ABCA10Q8WWZ4 1543 aa24.1■■□□□ 1.45
TPM4-205ENST00000586833 DNAJC5Q9H3Z4 198 aa24.09■■□□□ 1.45
TPM4-205ENST00000586833 GRIN2BQ13224 1484 aa24.04■■□□□ 1.44
TPM4-205ENST00000586833 GAPVD1Q14C86 1478 aa24.02■■□□□ 1.44
TPM4-205ENST00000586833 OSCARQ8IYS5 282 aa24.02■■□□□ 1.44
TPM4-205ENST00000586833 MAGI1Q96QZ7 1491 aaPredicted RBP23.96■■□□□ 1.43
TPM4-205ENST00000586833 FBLN2P98095 1184 aa23.96■■□□□ 1.43
TPM4-205ENST00000586833 SNAPC4Q5SXM2 1469 aa23.94■■□□□ 1.42
TPM4-205ENST00000586833 CHMP7Q8WUX9 453 aaPredicted RBP23.93■■□□□ 1.42
TPM4-205ENST00000586833 TRIM41Q8WV44 630 aa23.92■■□□□ 1.42
TPM4-205ENST00000586833 ABCA5Q8WWZ7 1642 aa23.91■■□□□ 1.42
TPM4-205ENST00000586833 KIF27Q86VH2 1401 aa23.89■■□□□ 1.41
TPM4-205ENST00000586833 SYNJ2O15056 1496 aa23.85■■□□□ 1.41
TPM4-205ENST00000586833 ERICH3Q5RHP9 1530 aa23.83■■□□□ 1.41
TPM4-205ENST00000586833 PBRM1Q86U86 1689 aa23.79■■□□□ 1.4
TPM4-205ENST00000586833 FHAD1B1AJZ9 1412 aa23.79■■□□□ 1.4
TPM4-205ENST00000586833 ADAMTS12P58397 1594 aa23.7■■□□□ 1.38
TPM4-205ENST00000586833 IGF1RP08069 1367 aa23.69■■□□□ 1.38
TPM4-205ENST00000586833 CHD1O14646 1710 aa23.69■■□□□ 1.38
TPM4-205ENST00000586833 GRIN2AQ12879 1464 aa23.68■■□□□ 1.38
TPM4-205ENST00000586833 CARMIL1Q5VZK9 1371 aa23.61■■□□□ 1.37
TPM4-205ENST00000586833 CUL7Q14999 1698 aa23.59■■□□□ 1.37
TPM4-205ENST00000586833 CHIC1Q5VXU3 224 aa23.57■■□□□ 1.36
TPM4-205ENST00000586833 NUP160Q12769 1436 aa23.57■■□□□ 1.36
TPM4-205ENST00000586833 CLASP1Q7Z460 1538 aa23.54■■□□□ 1.36
TPM4-205ENST00000586833 EEA1Q15075 1411 aa23.52■■□□□ 1.36
TPM4-205ENST00000586833 ARHGEF11O15085 1522 aa23.49■■□□□ 1.35
TPM4-205ENST00000586833 RUSC2Q8N2Y8 1516 aa23.48■■□□□ 1.35
TPM4-205ENST00000586833 RAPGEF2Q9Y4G8 1499 aa23.47■■□□□ 1.35
TPM4-205ENST00000586833 CEP170Q5SW79 1584 aa23.46■■□□□ 1.35
TPM4-205ENST00000586833 CSRNP3Q8WYN3 585 aa23.44■■□□□ 1.34
TPM4-205ENST00000586833 RIMBP3CA6NJZ7 1639 aa23.42■■□□□ 1.34
TPM4-205ENST00000586833 RIMBP3BA6NNM3 1639 aa23.42■■□□□ 1.34
TPM4-205ENST00000586833 RIMBP3Q9UFD9 1639 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms