RNA–Protein interactions for RNA: ENST00000586796.1

RETREG3-204, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 2

Gene RETREG3, Length 576 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-204ENST00000586796 NISCHQ9Y2I1 1504 aa51.48■■■■■ 5.83
RETREG3-204ENST00000586796 CCDC180Q9P1Z9 1646 aa45.57■■■■■ 4.89
RETREG3-204ENST00000586796 ABCC9O60706 1549 aa44.55■■■■■ 4.72
RETREG3-204ENST00000586796 DCAF8L2P0C7V8 631 aa43.18■■■■■ 4.5
RETREG3-204ENST00000586796 ZCCHC6Q5VYS8 1495 aaKnown RBP42.91■■■■■ 4.46
RETREG3-204ENST00000586796 RB1CC1Q8TDY2 1594 aa42.85■■■■■ 4.45
RETREG3-204ENST00000586796 NACADO15069 1562 aa42.83■■■■■ 4.45
RETREG3-204ENST00000586796 MYO15BQ96JP2 1530 aa42.57■■■■■ 4.41
RETREG3-204ENST00000586796 DCAF1Q9Y4B6 1507 aa42.51■■■■■ 4.4
RETREG3-204ENST00000586796 UNC13AQ9UPW8 1703 aa41.86■■■■■ 4.29
RETREG3-204ENST00000586796 SCRIBQ14160 1630 aa41.77■■■■■ 4.28
RETREG3-204ENST00000586796 PABPN1Q86U42 306 aaKnown RBP eCLIP41.75■■■■■ 4.27
RETREG3-204ENST00000586796 BICRAQ9NZM4 1560 aa41.54■■■■■ 4.24
RETREG3-204ENST00000586796 SHROOM4Q9ULL8 1493 aa41.02■■■■■ 4.16
RETREG3-204ENST00000586796 DNAJC5BQ9UF47 199 aa40.69■■■■■ 4.1
RETREG3-204ENST00000586796 EIF4G1Q04637 1599 aaKnown RBP40.44■■■■■ 4.06
RETREG3-204ENST00000586796 CC2D2AQ9P2K1 1620 aa40.24■■■■■ 4.03
RETREG3-204ENST00000586796 CECR2Q9BXF3 1484 aa40.15■■■■■ 4.02
RETREG3-204ENST00000586796 SMARCA4P51532 1647 aa39.89■■■■□ 3.98
RETREG3-204ENST00000586796 BAZ1AQ9NRL2 1556 aaPredicted RBP39.88■■■■□ 3.97
RETREG3-204ENST00000586796 MROH2BQ7Z745 1585 aa39.72■■■■□ 3.95
RETREG3-204ENST00000586796 ATAD2BQ9ULI0 1458 aa39.63■■■■□ 3.94
RETREG3-204ENST00000586796 SMARCA2P51531 1590 aa39.56■■■■□ 3.92
RETREG3-204ENST00000586796 NCAPD3P42695 1498 aa39.54■■■■□ 3.92
RETREG3-204ENST00000586796 PEG3Q9GZU2 1588 aa39.42■■■■□ 3.9
RETREG3-204ENST00000586796 RSF1Q96T23 1441 aaPredicted RBP39.35■■■■□ 3.89
RETREG3-204ENST00000586796 BAZ1BQ9UIG0 1483 aaKnown RBP39.35■■■■□ 3.89
RETREG3-204ENST00000586796 HMGXB3Q12766 1538 aa39.34■■■■□ 3.89
RETREG3-204ENST00000586796 WIZO95785 1651 aa39.32■■■■□ 3.88
RETREG3-204ENST00000586796 TOP2AP11388 1531 aaKnown RBP38.86■■■■□ 3.81
RETREG3-204ENST00000586796 SUPT5HO00267 1087 aaKnown RBP38.72■■■■□ 3.79
RETREG3-204ENST00000586796 NESP48681 1621 aa38.62■■■■□ 3.77
RETREG3-204ENST00000586796 CCDC88BA6NC98 1476 aa38.46■■■■□ 3.75
RETREG3-204ENST00000586796 CADPSQ9ULU8 1353 aa38.45■■■■□ 3.75
RETREG3-204ENST00000586796 LAMC3Q9Y6N6 1575 aa38.45■■■■□ 3.75
RETREG3-204ENST00000586796 ERCC6Q03468 1493 aa38.38■■■■□ 3.73
RETREG3-204ENST00000586796 PDS5BQ9NTI5 1447 aa38.24■■■■□ 3.71
RETREG3-204ENST00000586796 CFTRP13569 1480 aa38.23■■■■□ 3.71
RETREG3-204ENST00000586796 KIF21AQ7Z4S6 1674 aa38.1■■■■□ 3.69
RETREG3-204ENST00000586796 FANCD2Q9BXW9 1451 aa38.03■■■■□ 3.68
RETREG3-204ENST00000586796 CEP164Q9UPV0 1460 aa37.94■■■■□ 3.66
RETREG3-204ENST00000586796 PRDM2Q13029 1718 aa37.89■■■■□ 3.66
RETREG3-204ENST00000586796 THOC2Q8NI27 1593 aaKnown RBP37.88■■■■□ 3.65
RETREG3-204ENST00000586796 MRC2Q9UBG0 1479 aa37.83■■■■□ 3.65
RETREG3-204ENST00000586796 CUX2O14529 1486 aa37.78■■■■□ 3.64
RETREG3-204ENST00000586796 WDR62O43379 1518 aa37.66■■■■□ 3.62
RETREG3-204ENST00000586796 URB2Q14146 1524 aaKnown RBP37.61■■■■□ 3.61
RETREG3-204ENST00000586796 TOPBP1Q92547 1522 aa37.42■■■■□ 3.58
RETREG3-204ENST00000586796 ABCC8Q09428 1581 aa37.38■■■■□ 3.58
RETREG3-204ENST00000586796 DNMBPQ6XZF7 1577 aa37.38■■■■□ 3.57
RETREG3-204ENST00000586796 CUX1P39880 1505 aa37.24■■■■□ 3.55
RETREG3-204ENST00000586796 POLA1P09884 1462 aaPredicted RBP37.12■■■■□ 3.53
RETREG3-204ENST00000586796 IFT140Q96RY7 1462 aa37.12■■■■□ 3.53
RETREG3-204ENST00000586796 WRNQ14191 1432 aaPredicted RBP eCLIP37.11■■■■□ 3.53
RETREG3-204ENST00000586796 FGD5Q6ZNL6 1462 aa37.09■■■■□ 3.53
RETREG3-204ENST00000586796 SOGA1O94964 1423 aa37.02■■■■□ 3.52
RETREG3-204ENST00000586796 RAD54L2Q9Y4B4 1467 aa37.02■■■■□ 3.52
RETREG3-204ENST00000586796 SYNJ1O43426 1573 aa37■■■■□ 3.51
RETREG3-204ENST00000586796 ZNF608Q9ULD9 1512 aaPredicted RBP36.98■■■■□ 3.51
RETREG3-204ENST00000586796 TARBP1Q13395 1621 aaKnown RBP36.96■■■■□ 3.51
RETREG3-204ENST00000586796 TOP2BQ02880 1626 aa36.95■■■■□ 3.51
RETREG3-204ENST00000586796 BIVM-ERCC5R4GMW8 1640 aa36.92■■■■□ 3.5
RETREG3-204ENST00000586796 AQRO60306 1485 aaKnown RBP eCLIP36.83■■■■□ 3.495e-6■■□□□ 14.3
RETREG3-204ENST00000586796 TDRD9Q8NDG6 1382 aaKnown RBP36.82■■■■□ 3.49
RETREG3-204ENST00000586796 EIF4G3O43432 1585 aaKnown RBP36.79■■■■□ 3.48
RETREG3-204ENST00000586796 ABCA10Q8WWZ4 1543 aa36.69■■■■□ 3.46
RETREG3-204ENST00000586796 WDR97A6NE52 1622 aa36.68■■■■□ 3.46
RETREG3-204ENST00000586796 GAPVD1Q14C86 1478 aa36.57■■■■□ 3.45
RETREG3-204ENST00000586796 GRIN2BQ13224 1484 aa36.51■■■■□ 3.44
RETREG3-204ENST00000586796 TRIM41Q8WV44 630 aa36.51■■■■□ 3.44
RETREG3-204ENST00000586796 ABCA5Q8WWZ7 1642 aa36.51■■■■□ 3.43
RETREG3-204ENST00000586796 SNAPC4Q5SXM2 1469 aa36.47■■■■□ 3.43
RETREG3-204ENST00000586796 FBLN2P98095 1184 aa36.45■■■■□ 3.43
RETREG3-204ENST00000586796 PBRM1Q86U86 1689 aa36.44■■■■□ 3.42
RETREG3-204ENST00000586796 DNAJC5Q9H3Z4 198 aa36.41■■■■□ 3.42
RETREG3-204ENST00000586796 OSCARQ8IYS5 282 aa36.37■■■■□ 3.41
RETREG3-204ENST00000586796 MAGI1Q96QZ7 1491 aaPredicted RBP36.36■■■■□ 3.41
RETREG3-204ENST00000586796 KIF27Q86VH2 1401 aa36.32■■■■□ 3.4
RETREG3-204ENST00000586796 CHMP7Q8WUX9 453 aaPredicted RBP36.31■■■■□ 3.4
RETREG3-204ENST00000586796 CHD1O14646 1710 aa36.28■■■■□ 3.4
RETREG3-204ENST00000586796 SYNJ2O15056 1496 aa36.24■■■■□ 3.39
RETREG3-204ENST00000586796 ERICH3Q5RHP9 1530 aa36.24■■■■□ 3.39
RETREG3-204ENST00000586796 CHIC1Q5VXU3 224 aa36.2■■■■□ 3.39
RETREG3-204ENST00000586796 ADAMTS12P58397 1594 aa36.17■■■■□ 3.38
RETREG3-204ENST00000586796 IGF1RP08069 1367 aa36.15■■■■□ 3.38
RETREG3-204ENST00000586796 FHAD1B1AJZ9 1412 aa36.14■■■■□ 3.38
RETREG3-204ENST00000586796 RUSC2Q8N2Y8 1516 aa36.12■■■■□ 3.37
RETREG3-204ENST00000586796 GRIN2AQ12879 1464 aa36.05■■■■□ 3.36
RETREG3-204ENST00000586796 CUL7Q14999 1698 aa35.97■■■■□ 3.35
RETREG3-204ENST00000586796 CARMIL1Q5VZK9 1371 aa35.95■■■■□ 3.35
RETREG3-204ENST00000586796 CLASP1Q7Z460 1538 aa35.87■■■■□ 3.33
RETREG3-204ENST00000586796 CEP170Q5SW79 1584 aa35.86■■■■□ 3.33
RETREG3-204ENST00000586796 NUP160Q12769 1436 aa35.85■■■■□ 3.33
RETREG3-204ENST00000586796 FAM9AQ8IZU1 332 aaPredicted RBP35.84■■■■□ 3.33
RETREG3-204ENST00000586796 CSRNP3Q8WYN3 585 aa35.76■■■■□ 3.32
RETREG3-204ENST00000586796 RAPGEF2Q9Y4G8 1499 aa35.74■■■■□ 3.31
RETREG3-204ENST00000586796 EEA1Q15075 1411 aa35.73■■■■□ 3.31
RETREG3-204ENST00000586796 ARHGEF11O15085 1522 aa35.72■■■■□ 3.31
RETREG3-204ENST00000586796 RIMBP3CA6NJZ7 1639 aa35.69■■■■□ 3.3
RETREG3-204ENST00000586796 RIMBP3BA6NNM3 1639 aa35.69■■■■□ 3.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms