RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 NISCHQ9Y2I1 1504 aa26.17■■□□□ 1.78
CLIP3-203ENST00000586457 CCDC180Q9P1Z9 1646 aa23.27■■□□□ 1.32
CLIP3-203ENST00000586457 ABCC9O60706 1549 aa22.98■■□□□ 1.27
CLIP3-203ENST00000586457 DCAF8L2P0C7V8 631 aa22.23■■□□□ 1.15
CLIP3-203ENST00000586457 RB1CC1Q8TDY2 1594 aa22.04■■□□□ 1.12
CLIP3-203ENST00000586457 NACADO15069 1562 aa21.96■■□□□ 1.11
CLIP3-203ENST00000586457 MYO15BQ96JP2 1530 aa21.73■■□□□ 1.07
CLIP3-203ENST00000586457 ZCCHC6Q5VYS8 1495 aaKnown RBP21.72■■□□□ 1.07
CLIP3-203ENST00000586457 DCAF1Q9Y4B6 1507 aa21.6■■□□□ 1.05
CLIP3-203ENST00000586457 PABPN1Q86U42 306 aaKnown RBP eCLIP21.52■■□□□ 1.04
CLIP3-203ENST00000586457 UNC13AQ9UPW8 1703 aa21.4■■□□□ 1.02
CLIP3-203ENST00000586457 SCRIBQ14160 1630 aa21.29■■□□□ 1
CLIP3-203ENST00000586457 BICRAQ9NZM4 1560 aa21.24■□□□□ 0.99
CLIP3-203ENST00000586457 DNAJC5BQ9UF47 199 aa21.13■□□□□ 0.97
CLIP3-203ENST00000586457 SHROOM4Q9ULL8 1493 aa21.07■□□□□ 0.96
CLIP3-203ENST00000586457 EIF4G1Q04637 1599 aaKnown RBP20.77■□□□□ 0.92
CLIP3-203ENST00000586457 CC2D2AQ9P2K1 1620 aa20.72■□□□□ 0.91
CLIP3-203ENST00000586457 CECR2Q9BXF3 1484 aa20.66■□□□□ 0.9
CLIP3-203ENST00000586457 BAZ1AQ9NRL2 1556 aaPredicted RBP20.32■□□□□ 0.84
CLIP3-203ENST00000586457 SMARCA4P51532 1647 aa20.31■□□□□ 0.84
CLIP3-203ENST00000586457 SMARCA2P51531 1590 aa20.26■□□□□ 0.83
CLIP3-203ENST00000586457 NCAPD3P42695 1498 aa20.25■□□□□ 0.83
CLIP3-203ENST00000586457 ATAD2BQ9ULI0 1458 aa20.24■□□□□ 0.83
CLIP3-203ENST00000586457 MROH2BQ7Z745 1585 aa20.15■□□□□ 0.82
CLIP3-203ENST00000586457 BAZ1BQ9UIG0 1483 aaKnown RBP20.14■□□□□ 0.81
CLIP3-203ENST00000586457 HMGXB3Q12766 1538 aa20.12■□□□□ 0.81
CLIP3-203ENST00000586457 PEG3Q9GZU2 1588 aa20.06■□□□□ 0.8
CLIP3-203ENST00000586457 WIZO95785 1651 aa19.94■□□□□ 0.78
CLIP3-203ENST00000586457 RSF1Q96T23 1441 aaPredicted RBP19.91■□□□□ 0.78
CLIP3-203ENST00000586457 ERCC6Q03468 1493 aa19.9■□□□□ 0.78
CLIP3-203ENST00000586457 NESP48681 1621 aa19.8■□□□□ 0.76
CLIP3-203ENST00000586457 LAMC3Q9Y6N6 1575 aa19.75■□□□□ 0.75
CLIP3-203ENST00000586457 TOP2AP11388 1531 aaKnown RBP19.72■□□□□ 0.75
CLIP3-203ENST00000586457 PDS5BQ9NTI5 1447 aa19.72■□□□□ 0.75
CLIP3-203ENST00000586457 CADPSQ9ULU8 1353 aa19.71■□□□□ 0.75
CLIP3-203ENST00000586457 CUX2O14529 1486 aa19.61■□□□□ 0.73
CLIP3-203ENST00000586457 SUPT5HO00267 1087 aaKnown RBP19.55■□□□□ 0.72
CLIP3-203ENST00000586457 KIF21AQ7Z4S6 1674 aa19.53■□□□□ 0.72
CLIP3-203ENST00000586457 CCDC88BA6NC98 1476 aa19.53■□□□□ 0.72
CLIP3-203ENST00000586457 CFTRP13569 1480 aa19.52■□□□□ 0.72
CLIP3-203ENST00000586457 FANCD2Q9BXW9 1451 aa19.48■□□□□ 0.71
CLIP3-203ENST00000586457 CEP164Q9UPV0 1460 aa19.48■□□□□ 0.71
CLIP3-203ENST00000586457 MRC2Q9UBG0 1479 aa19.45■□□□□ 0.7
CLIP3-203ENST00000586457 THOC2Q8NI27 1593 aaKnown RBP19.44■□□□□ 0.7
CLIP3-203ENST00000586457 WDR62O43379 1518 aa19.32■□□□□ 0.68
CLIP3-203ENST00000586457 PRDM2Q13029 1718 aa19.31■□□□□ 0.68
CLIP3-203ENST00000586457 URB2Q14146 1524 aaKnown RBP19.22■□□□□ 0.67
CLIP3-203ENST00000586457 ABCC8Q09428 1581 aa19.2■□□□□ 0.66
CLIP3-203ENST00000586457 DNAJC5Q9H3Z4 198 aa19.2■□□□□ 0.66
CLIP3-203ENST00000586457 TOPBP1Q92547 1522 aa19.12■□□□□ 0.65
CLIP3-203ENST00000586457 DNMBPQ6XZF7 1577 aa19.09■□□□□ 0.65
CLIP3-203ENST00000586457 IFT140Q96RY7 1462 aa19.07■□□□□ 0.64
CLIP3-203ENST00000586457 SOGA1O94964 1423 aa18.97■□□□□ 0.63
CLIP3-203ENST00000586457 OSCARQ8IYS5 282 aa18.94■□□□□ 0.62
CLIP3-203ENST00000586457 POLA1P09884 1462 aaPredicted RBP18.94■□□□□ 0.62
CLIP3-203ENST00000586457 ZNF608Q9ULD9 1512 aaPredicted RBP18.94■□□□□ 0.62
CLIP3-203ENST00000586457 FGD5Q6ZNL6 1462 aa18.9■□□□□ 0.62
CLIP3-203ENST00000586457 CUX1P39880 1505 aa18.9■□□□□ 0.62
CLIP3-203ENST00000586457 RAD54L2Q9Y4B4 1467 aa18.89■□□□□ 0.61
CLIP3-203ENST00000586457 AQRO60306 1485 aaKnown RBP eCLIP18.88■□□□□ 0.61
CLIP3-203ENST00000586457 TARBP1Q13395 1621 aaKnown RBP18.86■□□□□ 0.61
CLIP3-203ENST00000586457 TDRD9Q8NDG6 1382 aaKnown RBP18.86■□□□□ 0.61
CLIP3-203ENST00000586457 FBLN2P98095 1184 aa18.86■□□□□ 0.61
CLIP3-203ENST00000586457 EIF4G3O43432 1585 aaKnown RBP18.85■□□□□ 0.61
CLIP3-203ENST00000586457 WRNQ14191 1432 aaPredicted RBP eCLIP18.83■□□□□ 0.61
CLIP3-203ENST00000586457 CHMP7Q8WUX9 453 aaPredicted RBP18.75■□□□□ 0.59
CLIP3-203ENST00000586457 WDR97A6NE52 1622 aa18.74■□□□□ 0.59
CLIP3-203ENST00000586457 TOP2BQ02880 1626 aa18.73■□□□□ 0.59
CLIP3-203ENST00000586457 GRIN2BQ13224 1484 aa18.71■□□□□ 0.59
CLIP3-203ENST00000586457 GAPVD1Q14C86 1478 aa18.71■□□□□ 0.59
CLIP3-203ENST00000586457 BIVM-ERCC5R4GMW8 1640 aa18.7■□□□□ 0.58
CLIP3-203ENST00000586457 ABCA10Q8WWZ4 1543 aa18.69■□□□□ 0.58
CLIP3-203ENST00000586457 SYNJ1O43426 1573 aa18.69■□□□□ 0.58
CLIP3-203ENST00000586457 SNAPC4Q5SXM2 1469 aa18.67■□□□□ 0.58
CLIP3-203ENST00000586457 TRIM41Q8WV44 630 aa18.66■□□□□ 0.58
CLIP3-203ENST00000586457 MAGI1Q96QZ7 1491 aaPredicted RBP18.65■□□□□ 0.58
CLIP3-203ENST00000586457 CHD1O14646 1710 aa18.63■□□□□ 0.57
CLIP3-203ENST00000586457 PBRM1Q86U86 1689 aa18.6■□□□□ 0.57
CLIP3-203ENST00000586457 SYNJ2O15056 1496 aa18.59■□□□□ 0.57
CLIP3-203ENST00000586457 ABCA5Q8WWZ7 1642 aa18.57■□□□□ 0.56
CLIP3-203ENST00000586457 KIF27Q86VH2 1401 aa18.49■□□□□ 0.55
CLIP3-203ENST00000586457 ERICH3Q5RHP9 1530 aa18.49■□□□□ 0.55
CLIP3-203ENST00000586457 FHAD1B1AJZ9 1412 aa18.49■□□□□ 0.55
CLIP3-203ENST00000586457 CYB5RLQ6IPT4 315 aa18.47■□□□□ 0.55
CLIP3-203ENST00000586457 RIMBP3CA6NJZ7 1639 aa18.47■□□□□ 0.55
CLIP3-203ENST00000586457 RIMBP3BA6NNM3 1639 aa18.47■□□□□ 0.55
CLIP3-203ENST00000586457 RIMBP3Q9UFD9 1639 aa18.47■□□□□ 0.55
CLIP3-203ENST00000586457 ARHGEF11O15085 1522 aa18.47■□□□□ 0.55
CLIP3-203ENST00000586457 GRIN2AQ12879 1464 aa18.45■□□□□ 0.54
CLIP3-203ENST00000586457 ADAMTS12P58397 1594 aa18.42■□□□□ 0.54
CLIP3-203ENST00000586457 CLASP1Q7Z460 1538 aa18.39■□□□□ 0.53
CLIP3-203ENST00000586457 IGF1RP08069 1367 aa18.37■□□□□ 0.53
CLIP3-203ENST00000586457 NUP160Q12769 1436 aa18.32■□□□□ 0.52
CLIP3-203ENST00000586457 CARMIL1Q5VZK9 1371 aa18.31■□□□□ 0.52
CLIP3-203ENST00000586457 CUL7Q14999 1698 aa18.31■□□□□ 0.52
CLIP3-203ENST00000586457 CEP170Q5SW79 1584 aa18.3■□□□□ 0.52
CLIP3-203ENST00000586457 JPH4Q96JJ6 628 aa18.29■□□□□ 0.52
CLIP3-203ENST00000586457 ARAP1Q96P48 1450 aa18.28■□□□□ 0.52
CLIP3-203ENST00000586457 TRHP20396 242 aaPredicted RBP18.23■□□□□ 0.51
CLIP3-203ENST00000586457 PRG4Q92954 1404 aaPredicted RBP18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms