RNA–Protein interactions for RNA: ENST00000586245.5

VMP1-203, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 544 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-203ENST00000586245 NISCHQ9Y2I1 1504 aa32.22■■■□□ 2.75
VMP1-203ENST00000586245 CCDC180Q9P1Z9 1646 aa28.46■■■□□ 2.15
VMP1-203ENST00000586245 ABCC9O60706 1549 aa27.48■■□□□ 1.99
VMP1-203ENST00000586245 ZCCHC6Q5VYS8 1495 aaKnown RBP26.93■■□□□ 1.9
VMP1-203ENST00000586245 DCAF8L2P0C7V8 631 aa26.83■■□□□ 1.89
VMP1-203ENST00000586245 NACADO15069 1562 aa26.68■■□□□ 1.86
VMP1-203ENST00000586245 DCAF1Q9Y4B6 1507 aa26.68■■□□□ 1.86
VMP1-203ENST00000586245 MYO15BQ96JP2 1530 aa26.64■■□□□ 1.85
VMP1-203ENST00000586245 RB1CC1Q8TDY2 1594 aa26.63■■□□□ 1.85
VMP1-203ENST00000586245 SCRIBQ14160 1630 aa26.03■■□□□ 1.76
VMP1-203ENST00000586245 UNC13AQ9UPW8 1703 aa25.95■■□□□ 1.74
VMP1-203ENST00000586245 PABPN1Q86U42 306 aaKnown RBP eCLIP25.76■■□□□ 1.71
VMP1-203ENST00000586245 BICRAQ9NZM4 1560 aa25.75■■□□□ 1.71
VMP1-203ENST00000586245 SHROOM4Q9ULL8 1493 aa25.74■■□□□ 1.71
VMP1-203ENST00000586245 EIF4G1Q04637 1599 aaKnown RBP25.06■■□□□ 1.6
VMP1-203ENST00000586245 CECR2Q9BXF3 1484 aa25.04■■□□□ 1.6
VMP1-203ENST00000586245 BAZ1AQ9NRL2 1556 aaPredicted RBP24.97■■□□□ 1.59
VMP1-203ENST00000586245 SMARCA4P51532 1647 aa24.91■■□□□ 1.58
VMP1-203ENST00000586245 CC2D2AQ9P2K1 1620 aa24.86■■□□□ 1.57
VMP1-203ENST00000586245 MROH2BQ7Z745 1585 aa24.84■■□□□ 1.57
VMP1-203ENST00000586245 DNAJC5BQ9UF47 199 aa24.81■■□□□ 1.56
VMP1-203ENST00000586245 RSF1Q96T23 1441 aaPredicted RBP24.7■■□□□ 1.55
VMP1-203ENST00000586245 SMARCA2P51531 1590 aa24.69■■□□□ 1.54
VMP1-203ENST00000586245 ATAD2BQ9ULI0 1458 aa24.68■■□□□ 1.54
VMP1-203ENST00000586245 PEG3Q9GZU2 1588 aa24.65■■□□□ 1.54
VMP1-203ENST00000586245 NCAPD3P42695 1498 aa24.6■■□□□ 1.53
VMP1-203ENST00000586245 WIZO95785 1651 aa24.59■■□□□ 1.53
VMP1-203ENST00000586245 BAZ1BQ9UIG0 1483 aaKnown RBP24.52■■□□□ 1.52
VMP1-203ENST00000586245 HMGXB3Q12766 1538 aa24.52■■□□□ 1.52
VMP1-203ENST00000586245 SUPT5HO00267 1087 aaKnown RBP24.45■■□□□ 1.5
VMP1-203ENST00000586245 TOP2AP11388 1531 aaKnown RBP24.37■■□□□ 1.49
VMP1-203ENST00000586245 CCDC88BA6NC98 1476 aa24.07■■□□□ 1.44
VMP1-203ENST00000586245 CADPSQ9ULU8 1353 aa23.92■■□□□ 1.42
VMP1-203ENST00000586245 LAMC3Q9Y6N6 1575 aa23.91■■□□□ 1.42
VMP1-203ENST00000586245 NESP48681 1621 aa23.88■■□□□ 1.41
VMP1-203ENST00000586245 CFTRP13569 1480 aa23.86■■□□□ 1.41
VMP1-203ENST00000586245 PDS5BQ9NTI5 1447 aa23.76■■□□□ 1.39
VMP1-203ENST00000586245 ERCC6Q03468 1493 aa23.7■■□□□ 1.38
VMP1-203ENST00000586245 PRDM2Q13029 1718 aa23.68■■□□□ 1.38
VMP1-203ENST00000586245 FANCD2Q9BXW9 1451 aa23.66■■□□□ 1.38
VMP1-203ENST00000586245 CEP164Q9UPV0 1460 aa23.6■■□□□ 1.37
VMP1-203ENST00000586245 KIF21AQ7Z4S6 1674 aa23.6■■□□□ 1.37
VMP1-203ENST00000586245 MRC2Q9UBG0 1479 aa23.47■■□□□ 1.35
VMP1-203ENST00000586245 THOC2Q8NI27 1593 aaKnown RBP23.42■■□□□ 1.34
VMP1-203ENST00000586245 URB2Q14146 1524 aaKnown RBP23.37■■□□□ 1.33
VMP1-203ENST00000586245 ABCC8Q09428 1581 aa23.36■■□□□ 1.33
VMP1-203ENST00000586245 WDR62O43379 1518 aa23.35■■□□□ 1.33
VMP1-203ENST00000586245 DNMBPQ6XZF7 1577 aa23.32■■□□□ 1.32
VMP1-203ENST00000586245 WRNQ14191 1432 aaPredicted RBP eCLIP23.32■■□□□ 1.32
VMP1-203ENST00000586245 TOPBP1Q92547 1522 aa23.31■■□□□ 1.32
VMP1-203ENST00000586245 CUX1P39880 1505 aa23.28■■□□□ 1.32
VMP1-203ENST00000586245 CUX2O14529 1486 aa23.27■■□□□ 1.32
VMP1-203ENST00000586245 SYNJ1O43426 1573 aa23.2■■□□□ 1.3
VMP1-203ENST00000586245 TOP2BQ02880 1626 aa23.19■■□□□ 1.3
VMP1-203ENST00000586245 BIVM-ERCC5R4GMW8 1640 aa23.18■■□□□ 1.3
VMP1-203ENST00000586245 FGD5Q6ZNL6 1462 aa23.15■■□□□ 1.3
VMP1-203ENST00000586245 POLA1P09884 1462 aaPredicted RBP23.14■■□□□ 1.29
VMP1-203ENST00000586245 IFT140Q96RY7 1462 aa23.08■■□□□ 1.29
VMP1-203ENST00000586245 SOGA1O94964 1423 aa23.08■■□□□ 1.28
VMP1-203ENST00000586245 TRIM41Q8WV44 630 aa23.07■■□□□ 1.28
VMP1-203ENST00000586245 RAD54L2Q9Y4B4 1467 aa23.04■■□□□ 1.28
VMP1-203ENST00000586245 CHIC1Q5VXU3 224 aa23.03■■□□□ 1.28
VMP1-203ENST00000586245 TARBP1Q13395 1621 aaKnown RBP23■■□□□ 1.27
VMP1-203ENST00000586245 ABCA10Q8WWZ4 1543 aa22.94■■□□□ 1.26
VMP1-203ENST00000586245 ZNF608Q9ULD9 1512 aaPredicted RBP22.92■■□□□ 1.26
VMP1-203ENST00000586245 WDR97A6NE52 1622 aa22.9■■□□□ 1.26
VMP1-203ENST00000586245 TDRD9Q8NDG6 1382 aaKnown RBP22.89■■□□□ 1.25
VMP1-203ENST00000586245 AQRO60306 1485 aaKnown RBP eCLIP22.85■■□□□ 1.25
VMP1-203ENST00000586245 EIF4G3O43432 1585 aaKnown RBP22.84■■□□□ 1.25
VMP1-203ENST00000586245 GAPVD1Q14C86 1478 aa22.81■■□□□ 1.24
VMP1-203ENST00000586245 KIF27Q86VH2 1401 aa22.8■■□□□ 1.24
VMP1-203ENST00000586245 ABCA5Q8WWZ7 1642 aa22.79■■□□□ 1.24
VMP1-203ENST00000586245 GRIN2BQ13224 1484 aa22.76■■□□□ 1.23
VMP1-203ENST00000586245 PBRM1Q86U86 1689 aa22.71■■□□□ 1.23
VMP1-203ENST00000586245 ERICH3Q5RHP9 1530 aa22.68■■□□□ 1.22
VMP1-203ENST00000586245 RUSC2Q8N2Y8 1516 aa22.67■■□□□ 1.22
VMP1-203ENST00000586245 SNAPC4Q5SXM2 1469 aa22.66■■□□□ 1.22
VMP1-203ENST00000586245 EEA1Q15075 1411 aa22.65■■□□□ 1.22
VMP1-203ENST00000586245 MAGI1Q96QZ7 1491 aaPredicted RBP22.65■■□□□ 1.22
VMP1-203ENST00000586245 IGF1RP08069 1367 aa22.63■■□□□ 1.21
VMP1-203ENST00000586245 FAM9AQ8IZU1 332 aaPredicted RBP22.59■■□□□ 1.21
VMP1-203ENST00000586245 FHAD1B1AJZ9 1412 aa22.57■■□□□ 1.2
VMP1-203ENST00000586245 CUL7Q14999 1698 aa22.56■■□□□ 1.2
VMP1-203ENST00000586245 ADAMTS12P58397 1594 aa22.56■■□□□ 1.2
VMP1-203ENST00000586245 FBLN2P98095 1184 aa22.56■■□□□ 1.2
VMP1-203ENST00000586245 CSRNP3Q8WYN3 585 aa22.56■■□□□ 1.2
VMP1-203ENST00000586245 SYNJ2O15056 1496 aa22.55■■□□□ 1.2
VMP1-203ENST00000586245 CHMP7Q8WUX9 453 aaPredicted RBP22.55■■□□□ 1.2
VMP1-203ENST00000586245 CARMIL1Q5VZK9 1371 aa22.53■■□□□ 1.2
VMP1-203ENST00000586245 CHD1O14646 1710 aa22.47■■□□□ 1.19
VMP1-203ENST00000586245 GRIN2AQ12879 1464 aa22.45■■□□□ 1.18
VMP1-203ENST00000586245 RAPGEF2Q9Y4G8 1499 aa22.44■■□□□ 1.18
VMP1-203ENST00000586245 PRXQ9BXM0 1461 aa22.43■■□□□ 1.18
VMP1-203ENST00000586245 OSCARQ8IYS5 282 aa22.4■■□□□ 1.18
VMP1-203ENST00000586245 KIF21BO75037 1637 aa22.35■■□□□ 1.17
VMP1-203ENST00000586245 NUP160Q12769 1436 aa22.32■■□□□ 1.16
VMP1-203ENST00000586245 CEP170Q5SW79 1584 aa22.31■■□□□ 1.16
VMP1-203ENST00000586245 GOLGA3Q08378 1498 aa22.28■■□□□ 1.16
VMP1-203ENST00000586245 EHMT2Q96KQ7 1210 aa22.27■■□□□ 1.16
VMP1-203ENST00000586245 CLASP1Q7Z460 1538 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 131.3 ms