RNA–Protein interactions for RNA: ENST00000585894.5

RETREG3-203, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 1 (best) BASIC

Gene RETREG3, Length 1,733 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-203ENST00000585894 NISCHQ9Y2I1 1504 aa30.46■■■□□ 2.47
RETREG3-203ENST00000585894 CCDC180Q9P1Z9 1646 aa27.01■■□□□ 1.91
RETREG3-203ENST00000585894 ABCC9O60706 1549 aa26.36■■□□□ 1.81
RETREG3-203ENST00000585894 DCAF8L2P0C7V8 631 aa25.45■■□□□ 1.66
RETREG3-203ENST00000585894 ZCCHC6Q5VYS8 1495 aaKnown RBP25.42■■□□□ 1.66
RETREG3-203ENST00000585894 RB1CC1Q8TDY2 1594 aa25.34■■□□□ 1.65
RETREG3-203ENST00000585894 NACADO15069 1562 aa25.32■■□□□ 1.64
RETREG3-203ENST00000585894 MYO15BQ96JP2 1530 aa25.16■■□□□ 1.62
RETREG3-203ENST00000585894 DCAF1Q9Y4B6 1507 aa25.14■■□□□ 1.61
RETREG3-203ENST00000585894 UNC13AQ9UPW8 1703 aa24.9■■□□□ 1.58
RETREG3-203ENST00000585894 SCRIBQ14160 1630 aa24.76■■□□□ 1.55
RETREG3-203ENST00000585894 PABPN1Q86U42 306 aaKnown RBP eCLIP24.66■■□□□ 1.54
RETREG3-203ENST00000585894 BICRAQ9NZM4 1560 aa24.63■■□□□ 1.53
RETREG3-203ENST00000585894 SHROOM4Q9ULL8 1493 aa24.27■■□□□ 1.48
RETREG3-203ENST00000585894 DNAJC5BQ9UF47 199 aa24.06■■□□□ 1.44
RETREG3-203ENST00000585894 EIF4G1Q04637 1599 aaKnown RBP23.95■■□□□ 1.42
RETREG3-203ENST00000585894 CC2D2AQ9P2K1 1620 aa23.84■■□□□ 1.41
RETREG3-203ENST00000585894 CECR2Q9BXF3 1484 aa23.78■■□□□ 1.4
RETREG3-203ENST00000585894 SMARCA4P51532 1647 aa23.64■■□□□ 1.37
RETREG3-203ENST00000585894 BAZ1AQ9NRL2 1556 aaPredicted RBP23.59■■□□□ 1.37
RETREG3-203ENST00000585894 MROH2BQ7Z745 1585 aa23.53■■□□□ 1.36
RETREG3-203ENST00000585894 ATAD2BQ9ULI0 1458 aa23.44■■□□□ 1.34
RETREG3-203ENST00000585894 SMARCA2P51531 1590 aa23.38■■□□□ 1.33
RETREG3-203ENST00000585894 NCAPD3P42695 1498 aa23.36■■□□□ 1.33
RETREG3-203ENST00000585894 PEG3Q9GZU2 1588 aa23.35■■□□□ 1.33
RETREG3-203ENST00000585894 WIZO95785 1651 aa23.33■■□□□ 1.32
RETREG3-203ENST00000585894 RSF1Q96T23 1441 aaPredicted RBP23.28■■□□□ 1.32
RETREG3-203ENST00000585894 HMGXB3Q12766 1538 aa23.28■■□□□ 1.32
RETREG3-203ENST00000585894 BAZ1BQ9UIG0 1483 aaKnown RBP23.26■■□□□ 1.31
RETREG3-203ENST00000585894 TOP2AP11388 1531 aaKnown RBP23.01■■□□□ 1.27
RETREG3-203ENST00000585894 NESP48681 1621 aa22.88■■□□□ 1.25
RETREG3-203ENST00000585894 SUPT5HO00267 1087 aaKnown RBP22.87■■□□□ 1.25
RETREG3-203ENST00000585894 CCDC88BA6NC98 1476 aa22.75■■□□□ 1.23
RETREG3-203ENST00000585894 LAMC3Q9Y6N6 1575 aa22.74■■□□□ 1.23
RETREG3-203ENST00000585894 CADPSQ9ULU8 1353 aa22.7■■□□□ 1.22
RETREG3-203ENST00000585894 ERCC6Q03468 1493 aa22.66■■□□□ 1.22
RETREG3-203ENST00000585894 KIF21AQ7Z4S6 1674 aa22.63■■□□□ 1.21
RETREG3-203ENST00000585894 CFTRP13569 1480 aa22.6■■□□□ 1.21
RETREG3-203ENST00000585894 PDS5BQ9NTI5 1447 aa22.55■■□□□ 1.2
RETREG3-203ENST00000585894 PRDM2Q13029 1718 aa22.52■■□□□ 1.2
RETREG3-203ENST00000585894 FANCD2Q9BXW9 1451 aa22.48■■□□□ 1.19
RETREG3-203ENST00000585894 THOC2Q8NI27 1593 aaKnown RBP22.47■■□□□ 1.19
RETREG3-203ENST00000585894 CEP164Q9UPV0 1460 aa22.43■■□□□ 1.18
RETREG3-203ENST00000585894 MRC2Q9UBG0 1479 aa22.36■■□□□ 1.17
RETREG3-203ENST00000585894 CUX2O14529 1486 aa22.3■■□□□ 1.16
RETREG3-203ENST00000585894 WDR62O43379 1518 aa22.28■■□□□ 1.16
RETREG3-203ENST00000585894 URB2Q14146 1524 aaKnown RBP22.28■■□□□ 1.16
RETREG3-203ENST00000585894 TOPBP1Q92547 1522 aa22.15■■□□□ 1.14
RETREG3-203ENST00000585894 DNMBPQ6XZF7 1577 aa22.12■■□□□ 1.13
RETREG3-203ENST00000585894 CUX1P39880 1505 aa22.06■■□□□ 1.12
RETREG3-203ENST00000585894 ABCC8Q09428 1581 aa22.05■■□□□ 1.12
RETREG3-203ENST00000585894 POLA1P09884 1462 aaPredicted RBP21.97■■□□□ 1.11
RETREG3-203ENST00000585894 FGD5Q6ZNL6 1462 aa21.95■■□□□ 1.1
RETREG3-203ENST00000585894 SYNJ1O43426 1573 aa21.95■■□□□ 1.1
RETREG3-203ENST00000585894 WRNQ14191 1432 aaPredicted RBP eCLIP21.93■■□□□ 1.1
RETREG3-203ENST00000585894 IFT140Q96RY7 1462 aa21.92■■□□□ 1.1
RETREG3-203ENST00000585894 RAD54L2Q9Y4B4 1467 aa21.91■■□□□ 1.1
RETREG3-203ENST00000585894 TARBP1Q13395 1621 aaKnown RBP21.91■■□□□ 1.1
RETREG3-203ENST00000585894 ZNF608Q9ULD9 1512 aaPredicted RBP21.9■■□□□ 1.1
RETREG3-203ENST00000585894 BIVM-ERCC5R4GMW8 1640 aa21.9■■□□□ 1.1
RETREG3-203ENST00000585894 TOP2BQ02880 1626 aa21.88■■□□□ 1.09
RETREG3-203ENST00000585894 SOGA1O94964 1423 aa21.86■■□□□ 1.09
RETREG3-203ENST00000585894 EIF4G3O43432 1585 aaKnown RBP21.82■■□□□ 1.08
RETREG3-203ENST00000585894 WDR97A6NE52 1622 aa21.79■■□□□ 1.08
RETREG3-203ENST00000585894 AQRO60306 1485 aaKnown RBP eCLIP21.78■■□□□ 1.085e-6■■■□□ 18.1
RETREG3-203ENST00000585894 TDRD9Q8NDG6 1382 aaKnown RBP21.75■■□□□ 1.07
RETREG3-203ENST00000585894 ABCA10Q8WWZ4 1543 aa21.7■■□□□ 1.06
RETREG3-203ENST00000585894 ABCA5Q8WWZ7 1642 aa21.65■■□□□ 1.06
RETREG3-203ENST00000585894 PBRM1Q86U86 1689 aa21.63■■□□□ 1.05
RETREG3-203ENST00000585894 GAPVD1Q14C86 1478 aa21.61■■□□□ 1.05
RETREG3-203ENST00000585894 GRIN2BQ13224 1484 aa21.57■■□□□ 1.04
RETREG3-203ENST00000585894 SNAPC4Q5SXM2 1469 aa21.57■■□□□ 1.04
RETREG3-203ENST00000585894 CHD1O14646 1710 aa21.55■■□□□ 1.04
RETREG3-203ENST00000585894 TRIM41Q8WV44 630 aa21.52■■□□□ 1.03
RETREG3-203ENST00000585894 FBLN2P98095 1184 aa21.49■■□□□ 1.03
RETREG3-203ENST00000585894 MAGI1Q96QZ7 1491 aaPredicted RBP21.49■■□□□ 1.03
RETREG3-203ENST00000585894 DNAJC5Q9H3Z4 198 aa21.46■■□□□ 1.03
RETREG3-203ENST00000585894 KIF27Q86VH2 1401 aa21.44■■□□□ 1.02
RETREG3-203ENST00000585894 ADAMTS12P58397 1594 aa21.44■■□□□ 1.02
RETREG3-203ENST00000585894 ERICH3Q5RHP9 1530 aa21.44■■□□□ 1.02
RETREG3-203ENST00000585894 SYNJ2O15056 1496 aa21.42■■□□□ 1.02
RETREG3-203ENST00000585894 OSCARQ8IYS5 282 aa21.41■■□□□ 1.02
RETREG3-203ENST00000585894 RUSC2Q8N2Y8 1516 aa21.41■■□□□ 1.02
RETREG3-203ENST00000585894 CHMP7Q8WUX9 453 aaPredicted RBP21.39■■□□□ 1.01
RETREG3-203ENST00000585894 CHIC1Q5VXU3 224 aa21.38■■□□□ 1.01
RETREG3-203ENST00000585894 IGF1RP08069 1367 aa21.34■■□□□ 1.01
RETREG3-203ENST00000585894 FHAD1B1AJZ9 1412 aa21.34■■□□□ 1.01
RETREG3-203ENST00000585894 GRIN2AQ12879 1464 aa21.32■■□□□ 1
RETREG3-203ENST00000585894 CUL7Q14999 1698 aa21.3■■□□□ 1
RETREG3-203ENST00000585894 CEP170Q5SW79 1584 aa21.25■□□□□ 0.99
RETREG3-203ENST00000585894 CLASP1Q7Z460 1538 aa21.25■□□□□ 0.99
RETREG3-203ENST00000585894 CARMIL1Q5VZK9 1371 aa21.22■□□□□ 0.99
RETREG3-203ENST00000585894 NUP160Q12769 1436 aa21.2■□□□□ 0.98
RETREG3-203ENST00000585894 FAM9AQ8IZU1 332 aaPredicted RBP21.17■□□□□ 0.98
RETREG3-203ENST00000585894 RIMBP3CA6NJZ7 1639 aa21.15■□□□□ 0.98
RETREG3-203ENST00000585894 RIMBP3BA6NNM3 1639 aa21.15■□□□□ 0.98
RETREG3-203ENST00000585894 RIMBP3Q9UFD9 1639 aa21.15■□□□□ 0.98
RETREG3-203ENST00000585894 ARHGEF11O15085 1522 aa21.13■□□□□ 0.97
RETREG3-203ENST00000585894 RAPGEF2Q9Y4G8 1499 aa21.12■□□□□ 0.97
RETREG3-203ENST00000585894 CSRNP3Q8WYN3 585 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms