RNA–Protein interactions for RNA: ENST00000585540.1

PRKCSH-202, Transcript of protein kinase C substrate 80K-H, humanhuman

TSL 3

Gene PRKCSH, Length 501 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCSH-202ENST00000585540 NISCHQ9Y2I1 1504 aa33.53■■■□□ 2.96
PRKCSH-202ENST00000585540 CCDC180Q9P1Z9 1646 aa29.93■■■□□ 2.38
PRKCSH-202ENST00000585540 ABCC9O60706 1549 aa28.99■■■□□ 2.23
PRKCSH-202ENST00000585540 NACADO15069 1562 aa28.11■■■□□ 2.09
PRKCSH-202ENST00000585540 RB1CC1Q8TDY2 1594 aa28.11■■■□□ 2.09
PRKCSH-202ENST00000585540 MYO15BQ96JP2 1530 aa28.04■■■□□ 2.08
PRKCSH-202ENST00000585540 ZCCHC6Q5VYS8 1495 aaKnown RBP27.98■■■□□ 2.07
PRKCSH-202ENST00000585540 DCAF1Q9Y4B6 1507 aa27.9■■■□□ 2.06
PRKCSH-202ENST00000585540 DCAF8L2P0C7V8 631 aa27.75■■■□□ 2.03
PRKCSH-202ENST00000585540 UNC13AQ9UPW8 1703 aa27.34■■□□□ 1.97
PRKCSH-202ENST00000585540 SHROOM4Q9ULL8 1493 aa27.15■■□□□ 1.94
PRKCSH-202ENST00000585540 BICRAQ9NZM4 1560 aa27.12■■□□□ 1.93
PRKCSH-202ENST00000585540 SCRIBQ14160 1630 aa27.09■■□□□ 1.93
PRKCSH-202ENST00000585540 PABPN1Q86U42 306 aaKnown RBP eCLIP26.99■■□□□ 1.91
PRKCSH-202ENST00000585540 EIF4G1Q04637 1599 aaKnown RBP26.46■■□□□ 1.83
PRKCSH-202ENST00000585540 DNAJC5BQ9UF47 199 aa26.42■■□□□ 1.82
PRKCSH-202ENST00000585540 CC2D2AQ9P2K1 1620 aa26.31■■□□□ 1.8
PRKCSH-202ENST00000585540 CECR2Q9BXF3 1484 aa26.12■■□□□ 1.77
PRKCSH-202ENST00000585540 BAZ1AQ9NRL2 1556 aaPredicted RBP26.06■■□□□ 1.76
PRKCSH-202ENST00000585540 SMARCA4P51532 1647 aa26.01■■□□□ 1.75
PRKCSH-202ENST00000585540 SMARCA2P51531 1590 aa25.92■■□□□ 1.74
PRKCSH-202ENST00000585540 NCAPD3P42695 1498 aa25.88■■□□□ 1.73
PRKCSH-202ENST00000585540 PEG3Q9GZU2 1588 aa25.86■■□□□ 1.73
PRKCSH-202ENST00000585540 ATAD2BQ9ULI0 1458 aa25.85■■□□□ 1.73
PRKCSH-202ENST00000585540 HMGXB3Q12766 1538 aa25.82■■□□□ 1.72
PRKCSH-202ENST00000585540 MROH2BQ7Z745 1585 aa25.75■■□□□ 1.71
PRKCSH-202ENST00000585540 BAZ1BQ9UIG0 1483 aaKnown RBP25.66■■□□□ 1.7
PRKCSH-202ENST00000585540 RSF1Q96T23 1441 aaPredicted RBP25.49■■□□□ 1.67
PRKCSH-202ENST00000585540 WIZO95785 1651 aa25.46■■□□□ 1.67
PRKCSH-202ENST00000585540 TOP2AP11388 1531 aaKnown RBP25.33■■□□□ 1.65
PRKCSH-202ENST00000585540 LAMC3Q9Y6N6 1575 aa25.24■■□□□ 1.63
PRKCSH-202ENST00000585540 CADPSQ9ULU8 1353 aa25.09■■□□□ 1.61
PRKCSH-202ENST00000585540 ERCC6Q03468 1493 aa25.08■■□□□ 1.6
PRKCSH-202ENST00000585540 NESP48681 1621 aa25.06■■□□□ 1.6
PRKCSH-202ENST00000585540 PDS5BQ9NTI5 1447 aa25.04■■□□□ 1.6
PRKCSH-202ENST00000585540 CFTRP13569 1480 aa24.97■■□□□ 1.59
PRKCSH-202ENST00000585540 CCDC88BA6NC98 1476 aa24.92■■□□□ 1.58
PRKCSH-202ENST00000585540 CUX2O14529 1486 aa24.92■■□□□ 1.58
PRKCSH-202ENST00000585540 PRDM2Q13029 1718 aa24.86■■□□□ 1.57
PRKCSH-202ENST00000585540 KIF21AQ7Z4S6 1674 aa24.85■■□□□ 1.57
PRKCSH-202ENST00000585540 THOC2Q8NI27 1593 aaKnown RBP24.83■■□□□ 1.57
PRKCSH-202ENST00000585540 CEP164Q9UPV0 1460 aa24.8■■□□□ 1.56
PRKCSH-202ENST00000585540 FANCD2Q9BXW9 1451 aa24.79■■□□□ 1.56
PRKCSH-202ENST00000585540 MRC2Q9UBG0 1479 aa24.75■■□□□ 1.55
PRKCSH-202ENST00000585540 SUPT5HO00267 1087 aaKnown RBP24.71■■□□□ 1.55
PRKCSH-202ENST00000585540 WDR62O43379 1518 aa24.69■■□□□ 1.54
PRKCSH-202ENST00000585540 ABCC8Q09428 1581 aa24.54■■□□□ 1.52
PRKCSH-202ENST00000585540 URB2Q14146 1524 aaKnown RBP24.49■■□□□ 1.51
PRKCSH-202ENST00000585540 DNMBPQ6XZF7 1577 aa24.42■■□□□ 1.5
PRKCSH-202ENST00000585540 TOPBP1Q92547 1522 aa24.4■■□□□ 1.5
PRKCSH-202ENST00000585540 IFT140Q96RY7 1462 aa24.3■■□□□ 1.48
PRKCSH-202ENST00000585540 POLA1P09884 1462 aaPredicted RBP24.19■■□□□ 1.46
PRKCSH-202ENST00000585540 CUX1P39880 1505 aa24.18■■□□□ 1.46
PRKCSH-202ENST00000585540 DNAJC5Q9H3Z4 198 aa24.17■■□□□ 1.46
PRKCSH-202ENST00000585540 WDR97A6NE52 1622 aa24.16■■□□□ 1.46
PRKCSH-202ENST00000585540 TARBP1Q13395 1621 aaKnown RBP24.13■■□□□ 1.45
PRKCSH-202ENST00000585540 FGD5Q6ZNL6 1462 aa24.12■■□□□ 1.45
PRKCSH-202ENST00000585540 WRNQ14191 1432 aaPredicted RBP eCLIP24.09■■□□□ 1.45
PRKCSH-202ENST00000585540 BIVM-ERCC5R4GMW8 1640 aa24.08■■□□□ 1.45
PRKCSH-202ENST00000585540 SOGA1O94964 1423 aa24.07■■□□□ 1.44
PRKCSH-202ENST00000585540 TOP2BQ02880 1626 aa24.06■■□□□ 1.44
PRKCSH-202ENST00000585540 EIF4G3O43432 1585 aaKnown RBP24.03■■□□□ 1.44
PRKCSH-202ENST00000585540 ZNF608Q9ULD9 1512 aaPredicted RBP24.02■■□□□ 1.44
PRKCSH-202ENST00000585540 RAD54L2Q9Y4B4 1467 aa23.97■■□□□ 1.43
PRKCSH-202ENST00000585540 SYNJ1O43426 1573 aa23.96■■□□□ 1.43
PRKCSH-202ENST00000585540 ABCA10Q8WWZ4 1543 aa23.96■■□□□ 1.43
PRKCSH-202ENST00000585540 AQRO60306 1485 aaKnown RBP eCLIP23.88■■□□□ 1.411e-7■■□□□ 12.8
PRKCSH-202ENST00000585540 ABCA5Q8WWZ7 1642 aa23.85■■□□□ 1.41
PRKCSH-202ENST00000585540 GRIN2BQ13224 1484 aa23.85■■□□□ 1.41
PRKCSH-202ENST00000585540 MAGI1Q96QZ7 1491 aaPredicted RBP23.83■■□□□ 1.41
PRKCSH-202ENST00000585540 TDRD9Q8NDG6 1382 aaKnown RBP23.83■■□□□ 1.41
PRKCSH-202ENST00000585540 GAPVD1Q14C86 1478 aa23.81■■□□□ 1.4
PRKCSH-202ENST00000585540 PBRM1Q86U86 1689 aa23.79■■□□□ 1.4
PRKCSH-202ENST00000585540 OSCARQ8IYS5 282 aa23.76■■□□□ 1.39
PRKCSH-202ENST00000585540 SNAPC4Q5SXM2 1469 aa23.75■■□□□ 1.39
PRKCSH-202ENST00000585540 ERICH3Q5RHP9 1530 aa23.71■■□□□ 1.39
PRKCSH-202ENST00000585540 SYNJ2O15056 1496 aa23.69■■□□□ 1.38
PRKCSH-202ENST00000585540 CHD1O14646 1710 aa23.69■■□□□ 1.38
PRKCSH-202ENST00000585540 KIF27Q86VH2 1401 aa23.62■■□□□ 1.37
PRKCSH-202ENST00000585540 ADAMTS12P58397 1594 aa23.61■■□□□ 1.37
PRKCSH-202ENST00000585540 CHMP7Q8WUX9 453 aaPredicted RBP23.59■■□□□ 1.37
PRKCSH-202ENST00000585540 FHAD1B1AJZ9 1412 aa23.59■■□□□ 1.37
PRKCSH-202ENST00000585540 FBLN2P98095 1184 aa23.55■■□□□ 1.36
PRKCSH-202ENST00000585540 CUL7Q14999 1698 aa23.52■■□□□ 1.36
PRKCSH-202ENST00000585540 GRIN2AQ12879 1464 aa23.52■■□□□ 1.36
PRKCSH-202ENST00000585540 CLASP1Q7Z460 1538 aa23.49■■□□□ 1.35
PRKCSH-202ENST00000585540 TRIM41Q8WV44 630 aa23.45■■□□□ 1.34
PRKCSH-202ENST00000585540 NUP160Q12769 1436 aa23.44■■□□□ 1.34
PRKCSH-202ENST00000585540 IGF1RP08069 1367 aa23.42■■□□□ 1.34
PRKCSH-202ENST00000585540 ARHGEF11O15085 1522 aa23.4■■□□□ 1.34
PRKCSH-202ENST00000585540 RIMBP3CA6NJZ7 1639 aa23.37■■□□□ 1.33
PRKCSH-202ENST00000585540 RIMBP3BA6NNM3 1639 aa23.37■■□□□ 1.33
PRKCSH-202ENST00000585540 RIMBP3Q9UFD9 1639 aa23.37■■□□□ 1.33
PRKCSH-202ENST00000585540 CEP170Q5SW79 1584 aa23.35■■□□□ 1.33
PRKCSH-202ENST00000585540 CARMIL1Q5VZK9 1371 aa23.32■■□□□ 1.32
PRKCSH-202ENST00000585540 EEA1Q15075 1411 aa23.29■■□□□ 1.32
PRKCSH-202ENST00000585540 SHROOM2Q13796 1616 aa23.27■■□□□ 1.32
PRKCSH-202ENST00000585540 RUSC2Q8N2Y8 1516 aa23.27■■□□□ 1.32
PRKCSH-202ENST00000585540 RAPGEF2Q9Y4G8 1499 aa23.24■■□□□ 1.31
PRKCSH-202ENST00000585540 KIAA0586Q9BVV6 1533 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms