RNA–Protein interactions for RNA: ENST00000585134.1

MKS1-213, Transcript of Meckel syndrome, type 1, humanhuman

TSL 2

Gene MKS1, Length 824 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-213ENST00000585134 NISCHQ9Y2I1 1504 aa34.04■■■■□ 3.04
MKS1-213ENST00000585134 CCDC180Q9P1Z9 1646 aa30.2■■■□□ 2.43
MKS1-213ENST00000585134 ABCC9O60706 1549 aa29.45■■■□□ 2.3
MKS1-213ENST00000585134 DCAF8L2P0C7V8 631 aa28.43■■■□□ 2.14
MKS1-213ENST00000585134 ZCCHC6Q5VYS8 1495 aaKnown RBP28.41■■■□□ 2.14
MKS1-213ENST00000585134 RB1CC1Q8TDY2 1594 aa28.35■■■□□ 2.13
MKS1-213ENST00000585134 NACADO15069 1562 aa28.32■■■□□ 2.12
MKS1-213ENST00000585134 MYO15BQ96JP2 1530 aa28.13■■■□□ 2.09
MKS1-213ENST00000585134 DCAF1Q9Y4B6 1507 aa28.11■■■□□ 2.09
MKS1-213ENST00000585134 UNC13AQ9UPW8 1703 aa27.74■■■□□ 2.03
MKS1-213ENST00000585134 SCRIBQ14160 1630 aa27.68■■■□□ 2.02
MKS1-213ENST00000585134 PABPN1Q86U42 306 aaKnown RBP eCLIP27.52■■■□□ 2
MKS1-213ENST00000585134 BICRAQ9NZM4 1560 aa27.48■■□□□ 1.99
MKS1-213ENST00000585134 SHROOM4Q9ULL8 1493 aa27.15■■□□□ 1.94
MKS1-213ENST00000585134 DNAJC5BQ9UF47 199 aa26.77■■□□□ 1.88
MKS1-213ENST00000585134 EIF4G1Q04637 1599 aaKnown RBP26.75■■□□□ 1.87
MKS1-213ENST00000585134 CC2D2AQ9P2K1 1620 aa26.61■■□□□ 1.85
MKS1-213ENST00000585134 CECR2Q9BXF3 1484 aa26.54■■□□□ 1.84
MKS1-213ENST00000585134 SMARCA4P51532 1647 aa26.42■■□□□ 1.82
MKS1-213ENST00000585134 BAZ1AQ9NRL2 1556 aaPredicted RBP26.38■■□□□ 1.81
MKS1-213ENST00000585134 MROH2BQ7Z745 1585 aa26.28■■□□□ 1.8
MKS1-213ENST00000585134 ATAD2BQ9ULI0 1458 aa26.18■■□□□ 1.78
MKS1-213ENST00000585134 SMARCA2P51531 1590 aa26.17■■□□□ 1.78
MKS1-213ENST00000585134 NCAPD3P42695 1498 aa26.09■■□□□ 1.77
MKS1-213ENST00000585134 PEG3Q9GZU2 1588 aa26.07■■□□□ 1.76
MKS1-213ENST00000585134 HMGXB3Q12766 1538 aa26.04■■□□□ 1.76
MKS1-213ENST00000585134 BAZ1BQ9UIG0 1483 aaKnown RBP26.03■■□□□ 1.76
MKS1-213ENST00000585134 WIZO95785 1651 aa26.03■■□□□ 1.76
MKS1-213ENST00000585134 RSF1Q96T23 1441 aaPredicted RBP25.99■■□□□ 1.75
MKS1-213ENST00000585134 TOP2AP11388 1531 aaKnown RBP25.74■■□□□ 1.71
MKS1-213ENST00000585134 SUPT5HO00267 1087 aaKnown RBP25.55■■□□□ 1.68
MKS1-213ENST00000585134 NESP48681 1621 aa25.52■■□□□ 1.68
MKS1-213ENST00000585134 LAMC3Q9Y6N6 1575 aa25.43■■□□□ 1.66
MKS1-213ENST00000585134 CCDC88BA6NC98 1476 aa25.4■■□□□ 1.66
MKS1-213ENST00000585134 ERCC6Q03468 1493 aa25.38■■□□□ 1.65
MKS1-213ENST00000585134 CADPSQ9ULU8 1353 aa25.37■■□□□ 1.65
MKS1-213ENST00000585134 CFTRP13569 1480 aa25.26■■□□□ 1.63
MKS1-213ENST00000585134 KIF21AQ7Z4S6 1674 aa25.25■■□□□ 1.63
MKS1-213ENST00000585134 PDS5BQ9NTI5 1447 aa25.24■■□□□ 1.63
MKS1-213ENST00000585134 PRDM2Q13029 1718 aa25.15■■□□□ 1.62
MKS1-213ENST00000585134 FANCD2Q9BXW9 1451 aa25.14■■□□□ 1.61
MKS1-213ENST00000585134 THOC2Q8NI27 1593 aaKnown RBP25.1■■□□□ 1.61
MKS1-213ENST00000585134 CEP164Q9UPV0 1460 aa25.1■■□□□ 1.61
MKS1-213ENST00000585134 MRC2Q9UBG0 1479 aa25.02■■□□□ 1.6
MKS1-213ENST00000585134 CUX2O14529 1486 aa24.96■■□□□ 1.59
MKS1-213ENST00000585134 WDR62O43379 1518 aa24.91■■□□□ 1.58
MKS1-213ENST00000585134 URB2Q14146 1524 aaKnown RBP24.88■■□□□ 1.57
MKS1-213ENST00000585134 TOPBP1Q92547 1522 aa24.76■■□□□ 1.55
MKS1-213ENST00000585134 DNMBPQ6XZF7 1577 aa24.75■■□□□ 1.55
MKS1-213ENST00000585134 ABCC8Q09428 1581 aa24.68■■□□□ 1.54
MKS1-213ENST00000585134 CUX1P39880 1505 aa24.65■■□□□ 1.54
MKS1-213ENST00000585134 POLA1P09884 1462 aaPredicted RBP24.56■■□□□ 1.52
MKS1-213ENST00000585134 FGD5Q6ZNL6 1462 aa24.54■■□□□ 1.52
MKS1-213ENST00000585134 IFT140Q96RY7 1462 aa24.54■■□□□ 1.52
MKS1-213ENST00000585134 WRNQ14191 1432 aaPredicted RBP eCLIP24.53■■□□□ 1.52
MKS1-213ENST00000585134 SYNJ1O43426 1573 aa24.51■■□□□ 1.51
MKS1-213ENST00000585134 BIVM-ERCC5R4GMW8 1640 aa24.47■■□□□ 1.51
MKS1-213ENST00000585134 RAD54L2Q9Y4B4 1467 aa24.47■■□□□ 1.51
MKS1-213ENST00000585134 TOP2BQ02880 1626 aa24.46■■□□□ 1.51
MKS1-213ENST00000585134 TARBP1Q13395 1621 aaKnown RBP24.46■■□□□ 1.51
MKS1-213ENST00000585134 ZNF608Q9ULD9 1512 aaPredicted RBP24.45■■□□□ 1.5
MKS1-213ENST00000585134 SOGA1O94964 1423 aa24.44■■□□□ 1.5
MKS1-213ENST00000585134 EIF4G3O43432 1585 aaKnown RBP24.39■■□□□ 1.5
MKS1-213ENST00000585134 WDR97A6NE52 1622 aa24.34■■□□□ 1.49
MKS1-213ENST00000585134 AQRO60306 1485 aaKnown RBP eCLIP24.31■■□□□ 1.48
MKS1-213ENST00000585134 TDRD9Q8NDG6 1382 aaKnown RBP24.29■■□□□ 1.48
MKS1-213ENST00000585134 ABCA10Q8WWZ4 1543 aa24.27■■□□□ 1.48
MKS1-213ENST00000585134 ABCA5Q8WWZ7 1642 aa24.2■■□□□ 1.46
MKS1-213ENST00000585134 PBRM1Q86U86 1689 aa24.18■■□□□ 1.46
MKS1-213ENST00000585134 GAPVD1Q14C86 1478 aa24.17■■□□□ 1.46
MKS1-213ENST00000585134 GRIN2BQ13224 1484 aa24.14■■□□□ 1.46
MKS1-213ENST00000585134 SNAPC4Q5SXM2 1469 aa24.14■■□□□ 1.46
MKS1-213ENST00000585134 TRIM41Q8WV44 630 aa24.06■■□□□ 1.44
MKS1-213ENST00000585134 CHD1O14646 1710 aa24.06■■□□□ 1.44
MKS1-213ENST00000585134 MAGI1Q96QZ7 1491 aaPredicted RBP24.05■■□□□ 1.44
MKS1-213ENST00000585134 FBLN2P98095 1184 aa24.02■■□□□ 1.44
MKS1-213ENST00000585134 KIF27Q86VH2 1401 aa24■■□□□ 1.43
MKS1-213ENST00000585134 ADAMTS12P58397 1594 aa23.99■■□□□ 1.43
MKS1-213ENST00000585134 ERICH3Q5RHP9 1530 aa23.98■■□□□ 1.43
MKS1-213ENST00000585134 SYNJ2O15056 1496 aa23.95■■□□□ 1.42
MKS1-213ENST00000585134 CHMP7Q8WUX9 453 aaPredicted RBP23.93■■□□□ 1.42
MKS1-213ENST00000585134 DNAJC5Q9H3Z4 198 aa23.93■■□□□ 1.42
MKS1-213ENST00000585134 OSCARQ8IYS5 282 aa23.92■■□□□ 1.42
MKS1-213ENST00000585134 FHAD1B1AJZ9 1412 aa23.89■■□□□ 1.41
MKS1-213ENST00000585134 CHIC1Q5VXU3 224 aa23.87■■□□□ 1.41
MKS1-213ENST00000585134 RUSC2Q8N2Y8 1516 aa23.87■■□□□ 1.41
MKS1-213ENST00000585134 CUL7Q14999 1698 aa23.84■■□□□ 1.41
MKS1-213ENST00000585134 GRIN2AQ12879 1464 aa23.84■■□□□ 1.41
MKS1-213ENST00000585134 IGF1RP08069 1367 aa23.82■■□□□ 1.4
MKS1-213ENST00000585134 CLASP1Q7Z460 1538 aa23.74■■□□□ 1.39
MKS1-213ENST00000585134 CEP170Q5SW79 1584 aa23.74■■□□□ 1.39
MKS1-213ENST00000585134 CARMIL1Q5VZK9 1371 aa23.73■■□□□ 1.39
MKS1-213ENST00000585134 NUP160Q12769 1436 aa23.69■■□□□ 1.38
MKS1-213ENST00000585134 FAM9AQ8IZU1 332 aaPredicted RBP23.65■■□□□ 1.38
MKS1-213ENST00000585134 EEA1Q15075 1411 aa23.63■■□□□ 1.37
MKS1-213ENST00000585134 RIMBP3CA6NJZ7 1639 aa23.62■■□□□ 1.37
MKS1-213ENST00000585134 RIMBP3BA6NNM3 1639 aa23.62■■□□□ 1.37
MKS1-213ENST00000585134 RIMBP3Q9UFD9 1639 aa23.62■■□□□ 1.37
MKS1-213ENST00000585134 RAPGEF2Q9Y4G8 1499 aa23.62■■□□□ 1.37
MKS1-213ENST00000585134 ARHGEF11O15085 1522 aa23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms