RNA–Protein interactions for RNA: ENST00000583391.1

ERBB2-215, Transcript of erb-b2 receptor tyrosine kinase 2, humanhuman

TSL 3

Gene ERBB2, Length 465 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB2-215ENST00000583391 NISCHQ9Y2I1 1504 aa31.2■■■□□ 2.59
ERBB2-215ENST00000583391 CCDC180Q9P1Z9 1646 aa27.72■■■□□ 2.03
ERBB2-215ENST00000583391 ABCC9O60706 1549 aa26.72■■□□□ 1.87
ERBB2-215ENST00000583391 ZCCHC6Q5VYS8 1495 aaKnown RBP26.1■■□□□ 1.77
ERBB2-215ENST00000583391 NACADO15069 1562 aa25.88■■□□□ 1.73
ERBB2-215ENST00000583391 RB1CC1Q8TDY2 1594 aa25.87■■□□□ 1.73
ERBB2-215ENST00000583391 DCAF8L2P0C7V8 631 aa25.86■■□□□ 1.73
ERBB2-215ENST00000583391 DCAF1Q9Y4B6 1507 aa25.82■■□□□ 1.72
ERBB2-215ENST00000583391 MYO15BQ96JP2 1530 aa25.78■■□□□ 1.72
ERBB2-215ENST00000583391 UNC13AQ9UPW8 1703 aa25.46■■□□□ 1.67
ERBB2-215ENST00000583391 SCRIBQ14160 1630 aa25.33■■□□□ 1.65
ERBB2-215ENST00000583391 BICRAQ9NZM4 1560 aa25.08■■□□□ 1.61
ERBB2-215ENST00000583391 PABPN1Q86U42 306 aaKnown RBP eCLIP24.94■■□□□ 1.58
ERBB2-215ENST00000583391 SHROOM4Q9ULL8 1493 aa24.87■■□□□ 1.57
ERBB2-215ENST00000583391 EIF4G1Q04637 1599 aaKnown RBP24.39■■□□□ 1.5
ERBB2-215ENST00000583391 CECR2Q9BXF3 1484 aa24.26■■□□□ 1.47
ERBB2-215ENST00000583391 CC2D2AQ9P2K1 1620 aa24.23■■□□□ 1.47
ERBB2-215ENST00000583391 SMARCA4P51532 1647 aa24.22■■□□□ 1.47
ERBB2-215ENST00000583391 BAZ1AQ9NRL2 1556 aaPredicted RBP24.19■■□□□ 1.46
ERBB2-215ENST00000583391 DNAJC5BQ9UF47 199 aa24.11■■□□□ 1.45
ERBB2-215ENST00000583391 MROH2BQ7Z745 1585 aa24.08■■□□□ 1.44
ERBB2-215ENST00000583391 SMARCA2P51531 1590 aa23.95■■□□□ 1.42
ERBB2-215ENST00000583391 PEG3Q9GZU2 1588 aa23.93■■□□□ 1.42
ERBB2-215ENST00000583391 ATAD2BQ9ULI0 1458 aa23.91■■□□□ 1.42
ERBB2-215ENST00000583391 WIZO95785 1651 aa23.91■■□□□ 1.42
ERBB2-215ENST00000583391 RSF1Q96T23 1441 aaPredicted RBP23.86■■□□□ 1.41
ERBB2-215ENST00000583391 HMGXB3Q12766 1538 aa23.82■■□□□ 1.4
ERBB2-215ENST00000583391 NCAPD3P42695 1498 aa23.81■■□□□ 1.4
ERBB2-215ENST00000583391 BAZ1BQ9UIG0 1483 aaKnown RBP23.78■■□□□ 1.4
ERBB2-215ENST00000583391 TOP2AP11388 1531 aaKnown RBP23.63■■□□□ 1.37
ERBB2-215ENST00000583391 SUPT5HO00267 1087 aaKnown RBP23.49■■□□□ 1.35
ERBB2-215ENST00000583391 CCDC88BA6NC98 1476 aa23.29■■□□□ 1.32
ERBB2-215ENST00000583391 NESP48681 1621 aa23.23■■□□□ 1.31
ERBB2-215ENST00000583391 LAMC3Q9Y6N6 1575 aa23.23■■□□□ 1.31
ERBB2-215ENST00000583391 PRDM2Q13029 1718 aa23.2■■□□□ 1.3
ERBB2-215ENST00000583391 CADPSQ9ULU8 1353 aa23.13■■□□□ 1.29
ERBB2-215ENST00000583391 KIF21AQ7Z4S6 1674 aa23.1■■□□□ 1.29
ERBB2-215ENST00000583391 CFTRP13569 1480 aa23.09■■□□□ 1.29
ERBB2-215ENST00000583391 ERCC6Q03468 1493 aa23.01■■□□□ 1.27
ERBB2-215ENST00000583391 PDS5BQ9NTI5 1447 aa22.98■■□□□ 1.27
ERBB2-215ENST00000583391 FANCD2Q9BXW9 1451 aa22.93■■□□□ 1.26
ERBB2-215ENST00000583391 CEP164Q9UPV0 1460 aa22.89■■□□□ 1.25
ERBB2-215ENST00000583391 THOC2Q8NI27 1593 aaKnown RBP22.89■■□□□ 1.25
ERBB2-215ENST00000583391 MRC2Q9UBG0 1479 aa22.79■■□□□ 1.24
ERBB2-215ENST00000583391 WDR62O43379 1518 aa22.72■■□□□ 1.23
ERBB2-215ENST00000583391 URB2Q14146 1524 aaKnown RBP22.7■■□□□ 1.22
ERBB2-215ENST00000583391 DNMBPQ6XZF7 1577 aa22.66■■□□□ 1.22
ERBB2-215ENST00000583391 ABCC8Q09428 1581 aa22.63■■□□□ 1.21
ERBB2-215ENST00000583391 TOPBP1Q92547 1522 aa22.62■■□□□ 1.21
ERBB2-215ENST00000583391 CUX2O14529 1486 aa22.61■■□□□ 1.21
ERBB2-215ENST00000583391 CUX1P39880 1505 aa22.58■■□□□ 1.21
ERBB2-215ENST00000583391 SYNJ1O43426 1573 aa22.54■■□□□ 1.2
ERBB2-215ENST00000583391 BIVM-ERCC5R4GMW8 1640 aa22.53■■□□□ 1.2
ERBB2-215ENST00000583391 WRNQ14191 1432 aaPredicted RBP eCLIP22.51■■□□□ 1.19
ERBB2-215ENST00000583391 TOP2BQ02880 1626 aa22.49■■□□□ 1.19
ERBB2-215ENST00000583391 FGD5Q6ZNL6 1462 aa22.45■■□□□ 1.18
ERBB2-215ENST00000583391 POLA1P09884 1462 aaPredicted RBP22.44■■□□□ 1.18
ERBB2-215ENST00000583391 TARBP1Q13395 1621 aaKnown RBP22.39■■□□□ 1.17
ERBB2-215ENST00000583391 WDR97A6NE52 1622 aa22.37■■□□□ 1.17
ERBB2-215ENST00000583391 IFT140Q96RY7 1462 aa22.36■■□□□ 1.17
ERBB2-215ENST00000583391 RAD54L2Q9Y4B4 1467 aa22.33■■□□□ 1.16
ERBB2-215ENST00000583391 SOGA1O94964 1423 aa22.29■■□□□ 1.16
ERBB2-215ENST00000583391 EIF4G3O43432 1585 aaKnown RBP22.29■■□□□ 1.16
ERBB2-215ENST00000583391 ZNF608Q9ULD9 1512 aaPredicted RBP22.26■■□□□ 1.15
ERBB2-215ENST00000583391 ABCA10Q8WWZ4 1543 aa22.21■■□□□ 1.15
ERBB2-215ENST00000583391 PBRM1Q86U86 1689 aa22.2■■□□□ 1.14
ERBB2-215ENST00000583391 ABCA5Q8WWZ7 1642 aa22.19■■□□□ 1.14
ERBB2-215ENST00000583391 AQRO60306 1485 aaKnown RBP eCLIP22.14■■□□□ 1.132e-8■■■■□ 20.8
ERBB2-215ENST00000583391 TDRD9Q8NDG6 1382 aaKnown RBP22.13■■□□□ 1.13
ERBB2-215ENST00000583391 TRIM41Q8WV44 630 aa22.13■■□□□ 1.13
ERBB2-215ENST00000583391 GAPVD1Q14C86 1478 aa22.09■■□□□ 1.13
ERBB2-215ENST00000583391 CHIC1Q5VXU3 224 aa22.07■■□□□ 1.12
ERBB2-215ENST00000583391 GRIN2BQ13224 1484 aa22.03■■□□□ 1.12
ERBB2-215ENST00000583391 CHD1O14646 1710 aa22■■□□□ 1.11
ERBB2-215ENST00000583391 KIF27Q86VH2 1401 aa22■■□□□ 1.11
ERBB2-215ENST00000583391 SNAPC4Q5SXM2 1469 aa22■■□□□ 1.11
ERBB2-215ENST00000583391 ERICH3Q5RHP9 1530 aa21.98■■□□□ 1.11
ERBB2-215ENST00000583391 ADAMTS12P58397 1594 aa21.96■■□□□ 1.11
ERBB2-215ENST00000583391 MAGI1Q96QZ7 1491 aaPredicted RBP21.96■■□□□ 1.11
ERBB2-215ENST00000583391 RUSC2Q8N2Y8 1516 aa21.93■■□□□ 1.1
ERBB2-215ENST00000583391 CUL7Q14999 1698 aa21.91■■□□□ 1.1
ERBB2-215ENST00000583391 SYNJ2O15056 1496 aa21.85■■□□□ 1.09
ERBB2-215ENST00000583391 FHAD1B1AJZ9 1412 aa21.81■■□□□ 1.08
ERBB2-215ENST00000583391 IGF1RP08069 1367 aa21.81■■□□□ 1.08
ERBB2-215ENST00000583391 EEA1Q15075 1411 aa21.79■■□□□ 1.08
ERBB2-215ENST00000583391 FBLN2P98095 1184 aa21.78■■□□□ 1.08
ERBB2-215ENST00000583391 GRIN2AQ12879 1464 aa21.77■■□□□ 1.08
ERBB2-215ENST00000583391 CHMP7Q8WUX9 453 aaPredicted RBP21.74■■□□□ 1.07
ERBB2-215ENST00000583391 CARMIL1Q5VZK9 1371 aa21.72■■□□□ 1.07
ERBB2-215ENST00000583391 FAM9AQ8IZU1 332 aaPredicted RBP21.71■■□□□ 1.07
ERBB2-215ENST00000583391 CEP170Q5SW79 1584 aa21.7■■□□□ 1.06
ERBB2-215ENST00000583391 RAPGEF2Q9Y4G8 1499 aa21.67■■□□□ 1.06
ERBB2-215ENST00000583391 CLASP1Q7Z460 1538 aa21.65■■□□□ 1.06
ERBB2-215ENST00000583391 PRXQ9BXM0 1461 aa21.65■■□□□ 1.06
ERBB2-215ENST00000583391 KIF21BO75037 1637 aa21.65■■□□□ 1.06
ERBB2-215ENST00000583391 CTTNBP2Q8WZ74 1663 aa21.64■■□□□ 1.05
ERBB2-215ENST00000583391 CSRNP3Q8WYN3 585 aa21.64■■□□□ 1.05
ERBB2-215ENST00000583391 NUP160Q12769 1436 aa21.63■■□□□ 1.05
ERBB2-215ENST00000583391 OSCARQ8IYS5 282 aa21.63■■□□□ 1.05
ERBB2-215ENST00000583391 IQGAP2Q13576 1575 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms