RNA–Protein interactions for RNA: ENST00000582293.1

RNF43-206, Transcript of ring finger protein 43, humanhuman

TSL 2

Gene RNF43, Length 324 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43-206ENST00000582293 NISCHQ9Y2I1 1504 aa39.81■■■■□ 3.96
RNF43-206ENST00000582293 CCDC180Q9P1Z9 1646 aa35.28■■■■□ 3.24
RNF43-206ENST00000582293 ABCC9O60706 1549 aa34.35■■■■□ 3.09
RNF43-206ENST00000582293 ZCCHC6Q5VYS8 1495 aaKnown RBP33.23■■■□□ 2.91
RNF43-206ENST00000582293 NACADO15069 1562 aa33.1■■■□□ 2.89
RNF43-206ENST00000582293 RB1CC1Q8TDY2 1594 aa33.09■■■□□ 2.89
RNF43-206ENST00000582293 DCAF8L2P0C7V8 631 aa33.05■■■□□ 2.88
RNF43-206ENST00000582293 MYO15BQ96JP2 1530 aa33■■■□□ 2.87
RNF43-206ENST00000582293 DCAF1Q9Y4B6 1507 aa32.94■■■□□ 2.86
RNF43-206ENST00000582293 UNC13AQ9UPW8 1703 aa32.44■■■□□ 2.78
RNF43-206ENST00000582293 SCRIBQ14160 1630 aa32.23■■■□□ 2.75
RNF43-206ENST00000582293 BICRAQ9NZM4 1560 aa32.2■■■□□ 2.75
RNF43-206ENST00000582293 PABPN1Q86U42 306 aaKnown RBP eCLIP32.12■■■□□ 2.73
RNF43-206ENST00000582293 SHROOM4Q9ULL8 1493 aa31.75■■■□□ 2.67
RNF43-206ENST00000582293 DNAJC5BQ9UF47 199 aa31.43■■■□□ 2.62
RNF43-206ENST00000582293 EIF4G1Q04637 1599 aaKnown RBP31.27■■■□□ 2.6
RNF43-206ENST00000582293 CC2D2AQ9P2K1 1620 aa31.09■■■□□ 2.57
RNF43-206ENST00000582293 CECR2Q9BXF3 1484 aa31.04■■■□□ 2.56
RNF43-206ENST00000582293 SMARCA4P51532 1647 aa30.85■■■□□ 2.53
RNF43-206ENST00000582293 BAZ1AQ9NRL2 1556 aaPredicted RBP30.8■■■□□ 2.52
RNF43-206ENST00000582293 MROH2BQ7Z745 1585 aa30.72■■■□□ 2.51
RNF43-206ENST00000582293 ATAD2BQ9ULI0 1458 aa30.63■■■□□ 2.49
RNF43-206ENST00000582293 NCAPD3P42695 1498 aa30.57■■■□□ 2.48
RNF43-206ENST00000582293 PEG3Q9GZU2 1588 aa30.56■■■□□ 2.48
RNF43-206ENST00000582293 SMARCA2P51531 1590 aa30.55■■■□□ 2.48
RNF43-206ENST00000582293 HMGXB3Q12766 1538 aa30.43■■■□□ 2.46
RNF43-206ENST00000582293 RSF1Q96T23 1441 aaPredicted RBP30.42■■■□□ 2.46
RNF43-206ENST00000582293 WIZO95785 1651 aa30.39■■■□□ 2.46
RNF43-206ENST00000582293 BAZ1BQ9UIG0 1483 aaKnown RBP30.34■■■□□ 2.45
RNF43-206ENST00000582293 TOP2AP11388 1531 aaKnown RBP30.05■■■□□ 2.4
RNF43-206ENST00000582293 NESP48681 1621 aa29.83■■■□□ 2.37
RNF43-206ENST00000582293 CCDC88BA6NC98 1476 aa29.71■■■□□ 2.35
RNF43-206ENST00000582293 LAMC3Q9Y6N6 1575 aa29.71■■■□□ 2.35
RNF43-206ENST00000582293 SUPT5HO00267 1087 aaKnown RBP29.7■■■□□ 2.35
RNF43-206ENST00000582293 CADPSQ9ULU8 1353 aa29.67■■■□□ 2.34
RNF43-206ENST00000582293 CFTRP13569 1480 aa29.56■■■□□ 2.32
RNF43-206ENST00000582293 ERCC6Q03468 1493 aa29.5■■■□□ 2.31
RNF43-206ENST00000582293 KIF21AQ7Z4S6 1674 aa29.47■■■□□ 2.31
RNF43-206ENST00000582293 PDS5BQ9NTI5 1447 aa29.45■■■□□ 2.31
RNF43-206ENST00000582293 PRDM2Q13029 1718 aa29.34■■■□□ 2.29
RNF43-206ENST00000582293 FANCD2Q9BXW9 1451 aa29.34■■■□□ 2.29
RNF43-206ENST00000582293 THOC2Q8NI27 1593 aaKnown RBP29.34■■■□□ 2.29
RNF43-206ENST00000582293 CEP164Q9UPV0 1460 aa29.26■■■□□ 2.27
RNF43-206ENST00000582293 MRC2Q9UBG0 1479 aa29.19■■■□□ 2.26
RNF43-206ENST00000582293 CUX2O14529 1486 aa29.17■■■□□ 2.26
RNF43-206ENST00000582293 WDR62O43379 1518 aa29.13■■■□□ 2.25
RNF43-206ENST00000582293 URB2Q14146 1524 aaKnown RBP29.09■■■□□ 2.25
RNF43-206ENST00000582293 TOPBP1Q92547 1522 aa28.91■■■□□ 2.22
RNF43-206ENST00000582293 DNMBPQ6XZF7 1577 aa28.88■■■□□ 2.21
RNF43-206ENST00000582293 ABCC8Q09428 1581 aa28.84■■■□□ 2.21
RNF43-206ENST00000582293 CUX1P39880 1505 aa28.8■■■□□ 2.2
RNF43-206ENST00000582293 POLA1P09884 1462 aaPredicted RBP28.69■■■□□ 2.18
RNF43-206ENST00000582293 FGD5Q6ZNL6 1462 aa28.64■■■□□ 2.17
RNF43-206ENST00000582293 IFT140Q96RY7 1462 aa28.64■■■□□ 2.17
RNF43-206ENST00000582293 WRNQ14191 1432 aaPredicted RBP eCLIP28.62■■■□□ 2.17
RNF43-206ENST00000582293 SYNJ1O43426 1573 aa28.62■■■□□ 2.17
RNF43-206ENST00000582293 TARBP1Q13395 1621 aaKnown RBP28.61■■■□□ 2.17
RNF43-206ENST00000582293 BIVM-ERCC5R4GMW8 1640 aa28.58■■■□□ 2.17
RNF43-206ENST00000582293 RAD54L2Q9Y4B4 1467 aa28.58■■■□□ 2.17
RNF43-206ENST00000582293 ZNF608Q9ULD9 1512 aaPredicted RBP28.57■■■□□ 2.16
RNF43-206ENST00000582293 TOP2BQ02880 1626 aa28.57■■■□□ 2.16
RNF43-206ENST00000582293 SOGA1O94964 1423 aa28.52■■■□□ 2.16
RNF43-206ENST00000582293 EIF4G3O43432 1585 aaKnown RBP28.45■■■□□ 2.14
RNF43-206ENST00000582293 WDR97A6NE52 1622 aa28.44■■■□□ 2.14
RNF43-206ENST00000582293 AQRO60306 1485 aaKnown RBP eCLIP28.4■■■□□ 2.148e-8■■■■■ 28.4
RNF43-206ENST00000582293 ABCA10Q8WWZ4 1543 aa28.37■■■□□ 2.13
RNF43-206ENST00000582293 TDRD9Q8NDG6 1382 aaKnown RBP28.37■■■□□ 2.13
RNF43-206ENST00000582293 ABCA5Q8WWZ7 1642 aa28.27■■■□□ 2.12
RNF43-206ENST00000582293 GAPVD1Q14C86 1478 aa28.21■■■□□ 2.11
RNF43-206ENST00000582293 PBRM1Q86U86 1689 aa28.17■■■□□ 2.1
RNF43-206ENST00000582293 GRIN2BQ13224 1484 aa28.17■■■□□ 2.1
RNF43-206ENST00000582293 SNAPC4Q5SXM2 1469 aa28.14■■■□□ 2.09
RNF43-206ENST00000582293 MAGI1Q96QZ7 1491 aaPredicted RBP28.07■■■□□ 2.08
RNF43-206ENST00000582293 DNAJC5Q9H3Z4 198 aa28.06■■■□□ 2.08
RNF43-206ENST00000582293 CHD1O14646 1710 aa28.04■■■□□ 2.08
RNF43-206ENST00000582293 TRIM41Q8WV44 630 aa28.01■■■□□ 2.07
RNF43-206ENST00000582293 ERICH3Q5RHP9 1530 aa28.01■■■□□ 2.07
RNF43-206ENST00000582293 KIF27Q86VH2 1401 aa27.98■■■□□ 2.07
RNF43-206ENST00000582293 SYNJ2O15056 1496 aa27.97■■■□□ 2.07
RNF43-206ENST00000582293 ADAMTS12P58397 1594 aa27.97■■■□□ 2.07
RNF43-206ENST00000582293 OSCARQ8IYS5 282 aa27.95■■■□□ 2.06
RNF43-206ENST00000582293 RUSC2Q8N2Y8 1516 aa27.92■■■□□ 2.06
RNF43-206ENST00000582293 FBLN2P98095 1184 aa27.91■■■□□ 2.06
RNF43-206ENST00000582293 IGF1RP08069 1367 aa27.9■■■□□ 2.06
RNF43-206ENST00000582293 CHIC1Q5VXU3 224 aa27.89■■■□□ 2.06
RNF43-206ENST00000582293 FHAD1B1AJZ9 1412 aa27.88■■■□□ 2.05
RNF43-206ENST00000582293 CHMP7Q8WUX9 453 aaPredicted RBP27.87■■■□□ 2.05
RNF43-206ENST00000582293 GRIN2AQ12879 1464 aa27.83■■■□□ 2.05
RNF43-206ENST00000582293 CUL7Q14999 1698 aa27.78■■■□□ 2.04
RNF43-206ENST00000582293 CLASP1Q7Z460 1538 aa27.77■■■□□ 2.04
RNF43-206ENST00000582293 CEP170Q5SW79 1584 aa27.73■■■□□ 2.03
RNF43-206ENST00000582293 NUP160Q12769 1436 aa27.72■■■□□ 2.03
RNF43-206ENST00000582293 CARMIL1Q5VZK9 1371 aa27.7■■■□□ 2.02
RNF43-206ENST00000582293 ARHGEF11O15085 1522 aa27.58■■■□□ 2.01
RNF43-206ENST00000582293 RIMBP3CA6NJZ7 1639 aa27.58■■■□□ 2.01
RNF43-206ENST00000582293 RIMBP3BA6NNM3 1639 aa27.58■■■□□ 2.01
RNF43-206ENST00000582293 RIMBP3Q9UFD9 1639 aa27.58■■■□□ 2.01
RNF43-206ENST00000582293 PRXQ9BXM0 1461 aa27.57■■■□□ 2
RNF43-206ENST00000582293 RAPGEF2Q9Y4G8 1499 aa27.56■■■□□ 2
RNF43-206ENST00000582293 EEA1Q15075 1411 aa27.55■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 160.9 ms