RNA–Protein interactions for RNA: ENST00000580646.5

GGA3-209, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 4

Gene GGA3, Length 829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-209ENST00000580646 NISCHQ9Y2I1 1504 aa23.95■■□□□ 1.43
GGA3-209ENST00000580646 CCDC180Q9P1Z9 1646 aa21.31■■□□□ 1
GGA3-209ENST00000580646 ABCC9O60706 1549 aa21.17■□□□□ 0.98
GGA3-209ENST00000580646 DNAJC5BQ9UF47 199 aa20.48■□□□□ 0.87
GGA3-209ENST00000580646 RB1CC1Q8TDY2 1594 aa20.22■□□□□ 0.83
GGA3-209ENST00000580646 DCAF8L2P0C7V8 631 aa20.21■□□□□ 0.83
GGA3-209ENST00000580646 NACADO15069 1562 aa20.15■□□□□ 0.82
GGA3-209ENST00000580646 MYO15BQ96JP2 1530 aa19.96■□□□□ 0.79
GGA3-209ENST00000580646 ZCCHC6Q5VYS8 1495 aaKnown RBP19.89■□□□□ 0.77
GGA3-209ENST00000580646 PABPN1Q86U42 306 aaKnown RBP eCLIP19.8■□□□□ 0.76
GGA3-209ENST00000580646 DCAF1Q9Y4B6 1507 aa19.79■□□□□ 0.76
GGA3-209ENST00000580646 UNC13AQ9UPW8 1703 aa19.67■□□□□ 0.74
GGA3-209ENST00000580646 BICRAQ9NZM4 1560 aa19.61■□□□□ 0.73
GGA3-209ENST00000580646 SCRIBQ14160 1630 aa19.47■□□□□ 0.71
GGA3-209ENST00000580646 SHROOM4Q9ULL8 1493 aa19.39■□□□□ 0.69
GGA3-209ENST00000580646 DNAJC5Q9H3Z4 198 aa19.15■□□□□ 0.66
GGA3-209ENST00000580646 EIF4G1Q04637 1599 aaKnown RBP19.12■□□□□ 0.65
GGA3-209ENST00000580646 CC2D2AQ9P2K1 1620 aa19.1■□□□□ 0.65
GGA3-209ENST00000580646 CECR2Q9BXF3 1484 aa19.05■□□□□ 0.64
GGA3-209ENST00000580646 NCAPD3P42695 1498 aa18.65■□□□□ 0.58
GGA3-209ENST00000580646 ATAD2BQ9ULI0 1458 aa18.61■□□□□ 0.57
GGA3-209ENST00000580646 SMARCA4P51532 1647 aa18.6■□□□□ 0.57
GGA3-209ENST00000580646 BAZ1AQ9NRL2 1556 aaPredicted RBP18.56■□□□□ 0.56
GGA3-209ENST00000580646 SMARCA2P51531 1590 aa18.55■□□□□ 0.56
GGA3-209ENST00000580646 HMGXB3Q12766 1538 aa18.47■□□□□ 0.55
GGA3-209ENST00000580646 MROH2BQ7Z745 1585 aa18.46■□□□□ 0.55
GGA3-209ENST00000580646 BAZ1BQ9UIG0 1483 aaKnown RBP18.42■□□□□ 0.54
GGA3-209ENST00000580646 PEG3Q9GZU2 1588 aa18.42■□□□□ 0.54
GGA3-209ENST00000580646 CUX2O14529 1486 aa18.27■□□□□ 0.52
GGA3-209ENST00000580646 ERCC6Q03468 1493 aa18.26■□□□□ 0.51
GGA3-209ENST00000580646 NESP48681 1621 aa18.24■□□□□ 0.51
GGA3-209ENST00000580646 WIZO95785 1651 aa18.21■□□□□ 0.51
GGA3-209ENST00000580646 RSF1Q96T23 1441 aaPredicted RBP18.19■□□□□ 0.5
GGA3-209ENST00000580646 LAMC3Q9Y6N6 1575 aa18.13■□□□□ 0.49
GGA3-209ENST00000580646 CADPSQ9ULU8 1353 aa18.1■□□□□ 0.49
GGA3-209ENST00000580646 PDS5BQ9NTI5 1447 aa18.07■□□□□ 0.48
GGA3-209ENST00000580646 TRIM41Q8WV44 630 aa18.02■□□□□ 0.48
GGA3-209ENST00000580646 TOP2AP11388 1531 aaKnown RBP18.02■□□□□ 0.47
GGA3-209ENST00000580646 THOC2Q8NI27 1593 aaKnown RBP17.96■□□□□ 0.46
GGA3-209ENST00000580646 KIF21AQ7Z4S6 1674 aa17.94■□□□□ 0.46
GGA3-209ENST00000580646 CFTRP13569 1480 aa17.92■□□□□ 0.46
GGA3-209ENST00000580646 MRC2Q9UBG0 1479 aa17.88■□□□□ 0.45
GGA3-209ENST00000580646 FANCD2Q9BXW9 1451 aa17.86■□□□□ 0.45
GGA3-209ENST00000580646 CCDC88BA6NC98 1476 aa17.85■□□□□ 0.45
GGA3-209ENST00000580646 CEP164Q9UPV0 1460 aa17.85■□□□□ 0.45
GGA3-209ENST00000580646 WDR62O43379 1518 aa17.8■□□□□ 0.44
GGA3-209ENST00000580646 URB2Q14146 1524 aaKnown RBP17.69■□□□□ 0.42
GGA3-209ENST00000580646 SUPT5HO00267 1087 aaKnown RBP17.67■□□□□ 0.42
GGA3-209ENST00000580646 PRDM2Q13029 1718 aa17.65■□□□□ 0.42
GGA3-209ENST00000580646 TOPBP1Q92547 1522 aa17.54■□□□□ 0.4
GGA3-209ENST00000580646 ABCC8Q09428 1581 aa17.53■□□□□ 0.4
GGA3-209ENST00000580646 IFT140Q96RY7 1462 aa17.5■□□□□ 0.39
GGA3-209ENST00000580646 DNMBPQ6XZF7 1577 aa17.48■□□□□ 0.39
GGA3-209ENST00000580646 ZNF608Q9ULD9 1512 aaPredicted RBP17.44■□□□□ 0.38
GGA3-209ENST00000580646 OSCARQ8IYS5 282 aa17.42■□□□□ 0.38
GGA3-209ENST00000580646 POLA1P09884 1462 aaPredicted RBP17.38■□□□□ 0.37
GGA3-209ENST00000580646 SOGA1O94964 1423 aa17.35■□□□□ 0.37
GGA3-209ENST00000580646 AQRO60306 1485 aaKnown RBP eCLIP17.34■□□□□ 0.37
GGA3-209ENST00000580646 TARBP1Q13395 1621 aaKnown RBP17.34■□□□□ 0.37
GGA3-209ENST00000580646 RAD54L2Q9Y4B4 1467 aa17.33■□□□□ 0.37
GGA3-209ENST00000580646 CUX1P39880 1505 aa17.32■□□□□ 0.36
GGA3-209ENST00000580646 FGD5Q6ZNL6 1462 aa17.31■□□□□ 0.36
GGA3-209ENST00000580646 EIF4G3O43432 1585 aaKnown RBP17.3■□□□□ 0.36
GGA3-209ENST00000580646 TDRD9Q8NDG6 1382 aaKnown RBP17.28■□□□□ 0.36
GGA3-209ENST00000580646 RIMBP3CA6NJZ7 1639 aa17.27■□□□□ 0.36
GGA3-209ENST00000580646 RIMBP3BA6NNM3 1639 aa17.27■□□□□ 0.36
GGA3-209ENST00000580646 RIMBP3Q9UFD9 1639 aa17.27■□□□□ 0.36
GGA3-209ENST00000580646 FBLN2P98095 1184 aa17.21■□□□□ 0.35
GGA3-209ENST00000580646 WDR97A6NE52 1622 aa17.17■□□□□ 0.34
GGA3-209ENST00000580646 WRNQ14191 1432 aaPredicted RBP eCLIP17.15■□□□□ 0.34
GGA3-209ENST00000580646 GRIN2BQ13224 1484 aa17.14■□□□□ 0.33
GGA3-209ENST00000580646 SNAPC4Q5SXM2 1469 aa17.14■□□□□ 0.33
GGA3-209ENST00000580646 ARHGEF11O15085 1522 aa17.13■□□□□ 0.33
GGA3-209ENST00000580646 ABCA10Q8WWZ4 1543 aa17.13■□□□□ 0.33
GGA3-209ENST00000580646 CHMP7Q8WUX9 453 aaPredicted RBP17.13■□□□□ 0.33
GGA3-209ENST00000580646 BIVM-ERCC5R4GMW8 1640 aa17.13■□□□□ 0.33
GGA3-209ENST00000580646 GAPVD1Q14C86 1478 aa17.12■□□□□ 0.33
GGA3-209ENST00000580646 MAGI1Q96QZ7 1491 aaPredicted RBP17.11■□□□□ 0.33
GGA3-209ENST00000580646 TOP2BQ02880 1626 aa17.1■□□□□ 0.33
GGA3-209ENST00000580646 CHD1O14646 1710 aa17.1■□□□□ 0.33
GGA3-209ENST00000580646 SYNJ1O43426 1573 aa17.07■□□□□ 0.32
GGA3-209ENST00000580646 SYNJ2O15056 1496 aa17.05■□□□□ 0.32
GGA3-209ENST00000580646 CYB5RLQ6IPT4 315 aa17.04■□□□□ 0.32
GGA3-209ENST00000580646 ABCA5Q8WWZ7 1642 aa17.03■□□□□ 0.32
GGA3-209ENST00000580646 TRHP20396 242 aaPredicted RBP17.02■□□□□ 0.32
GGA3-209ENST00000580646 PBRM1Q86U86 1689 aa16.99■□□□□ 0.31
GGA3-209ENST00000580646 CLASP1Q7Z460 1538 aa16.96■□□□□ 0.31
GGA3-209ENST00000580646 AEBP2Q6ZN18 517 aaPredicted RBP16.96■□□□□ 0.31
GGA3-209ENST00000580646 ARAP1Q96P48 1450 aa16.96■□□□□ 0.31
GGA3-209ENST00000580646 FHAD1B1AJZ9 1412 aa16.92■□□□□ 0.3
GGA3-209ENST00000580646 GRIN2AQ12879 1464 aa16.91■□□□□ 0.3
GGA3-209ENST00000580646 ERICH3Q5RHP9 1530 aa16.91■□□□□ 0.3
GGA3-209ENST00000580646 ADAMTS12P58397 1594 aa16.89■□□□□ 0.29
GGA3-209ENST00000580646 NUP160Q12769 1436 aa16.86■□□□□ 0.29
GGA3-209ENST00000580646 KIF27Q86VH2 1401 aa16.82■□□□□ 0.28
GGA3-209ENST00000580646 CEP170Q5SW79 1584 aa16.81■□□□□ 0.28
GGA3-209ENST00000580646 IGF1RP08069 1367 aa16.81■□□□□ 0.28
GGA3-209ENST00000580646 JPH4Q96JJ6 628 aa16.74■□□□□ 0.27
GGA3-209ENST00000580646 ERCC6L2Q5T890 1561 aa16.72■□□□□ 0.27
GGA3-209ENST00000580646 CARMIL1Q5VZK9 1371 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms