RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 NISCHQ9Y2I1 1504 aa35.49■■■■□ 3.27
SS18-215ENST00000580642 CCDC180Q9P1Z9 1646 aa31.19■■■□□ 2.58
SS18-215ENST00000580642 ZCCHC6Q5VYS8 1495 aaKnown RBP29.74■■■□□ 2.35
SS18-215ENST00000580642 ABCC9O60706 1549 aa29.62■■■□□ 2.33
SS18-215ENST00000580642 DCAF1Q9Y4B6 1507 aa29.51■■■□□ 2.32
SS18-215ENST00000580642 MYO15BQ96JP2 1530 aa29.37■■■□□ 2.29
SS18-215ENST00000580642 DCAF8L2P0C7V8 631 aa29.2■■■□□ 2.26
SS18-215ENST00000580642 NACADO15069 1562 aa29.18■■■□□ 2.26
SS18-215ENST00000580642 RB1CC1Q8TDY2 1594 aa28.97■■■□□ 2.23
SS18-215ENST00000580642 SCRIBQ14160 1630 aa28.39■■■□□ 2.13
SS18-215ENST00000580642 SHROOM4Q9ULL8 1493 aa28.34■■■□□ 2.13
SS18-215ENST00000580642 UNC13AQ9UPW8 1703 aa28.13■■■□□ 2.09
SS18-215ENST00000580642 BICRAQ9NZM4 1560 aa27.99■■■□□ 2.07
SS18-215ENST00000580642 PABPN1Q86U42 306 aaKnown RBP eCLIP27.82■■■□□ 2.04
SS18-215ENST00000580642 BAZ1AQ9NRL2 1556 aaPredicted RBP27.47■■□□□ 1.99
SS18-215ENST00000580642 CECR2Q9BXF3 1484 aa27.46■■□□□ 1.99
SS18-215ENST00000580642 RSF1Q96T23 1441 aaPredicted RBP27.33■■□□□ 1.97
SS18-215ENST00000580642 SMARCA4P51532 1647 aa27.3■■□□□ 1.96
SS18-215ENST00000580642 MROH2BQ7Z745 1585 aa27.29■■□□□ 1.96
SS18-215ENST00000580642 EIF4G1Q04637 1599 aaKnown RBP27.21■■□□□ 1.95
SS18-215ENST00000580642 SUPT5HO00267 1087 aaKnown RBP27.15■■□□□ 1.94
SS18-215ENST00000580642 PEG3Q9GZU2 1588 aa27.13■■□□□ 1.93
SS18-215ENST00000580642 SMARCA2P51531 1590 aa27.05■■□□□ 1.92
SS18-215ENST00000580642 ATAD2BQ9ULI0 1458 aa27■■□□□ 1.91
SS18-215ENST00000580642 WIZO95785 1651 aa26.98■■□□□ 1.91
SS18-215ENST00000580642 NCAPD3P42695 1498 aa26.93■■□□□ 1.9
SS18-215ENST00000580642 TOP2AP11388 1531 aaKnown RBP26.86■■□□□ 1.89
SS18-215ENST00000580642 CC2D2AQ9P2K1 1620 aa26.86■■□□□ 1.89
SS18-215ENST00000580642 HMGXB3Q12766 1538 aa26.84■■□□□ 1.89
SS18-215ENST00000580642 BAZ1BQ9UIG0 1483 aaKnown RBP26.81■■□□□ 1.88
SS18-215ENST00000580642 CCDC88BA6NC98 1476 aa26.52■■□□□ 1.84
SS18-215ENST00000580642 DNAJC5BQ9UF47 199 aa26.43■■□□□ 1.82
SS18-215ENST00000580642 CFTRP13569 1480 aa26.18■■□□□ 1.78
SS18-215ENST00000580642 CADPSQ9ULU8 1353 aa26.17■■□□□ 1.78
SS18-215ENST00000580642 LAMC3Q9Y6N6 1575 aa26.05■■□□□ 1.76
SS18-215ENST00000580642 PRDM2Q13029 1718 aa25.93■■□□□ 1.74
SS18-215ENST00000580642 CHIC1Q5VXU3 224 aa25.9■■□□□ 1.74
SS18-215ENST00000580642 PDS5BQ9NTI5 1447 aa25.88■■□□□ 1.73
SS18-215ENST00000580642 NESP48681 1621 aa25.85■■□□□ 1.73
SS18-215ENST00000580642 FANCD2Q9BXW9 1451 aa25.81■■□□□ 1.72
SS18-215ENST00000580642 WRNQ14191 1432 aaPredicted RBP eCLIP25.76■■□□□ 1.71
SS18-215ENST00000580642 CEP164Q9UPV0 1460 aa25.72■■□□□ 1.71
SS18-215ENST00000580642 TRIM41Q8WV44 630 aa25.71■■□□□ 1.71
SS18-215ENST00000580642 ABCC8Q09428 1581 aa25.69■■□□□ 1.7
SS18-215ENST00000580642 TOP2BQ02880 1626 aa25.6■■□□□ 1.69
SS18-215ENST00000580642 BIVM-ERCC5R4GMW8 1640 aa25.57■■□□□ 1.68
SS18-215ENST00000580642 CUX1P39880 1505 aa25.56■■□□□ 1.68
SS18-215ENST00000580642 SYNJ1O43426 1573 aa25.56■■□□□ 1.68
SS18-215ENST00000580642 KIF21AQ7Z4S6 1674 aa25.54■■□□□ 1.68
SS18-215ENST00000580642 DNMBPQ6XZF7 1577 aa25.53■■□□□ 1.68
SS18-215ENST00000580642 ERCC6Q03468 1493 aa25.53■■□□□ 1.68
SS18-215ENST00000580642 MRC2Q9UBG0 1479 aa25.51■■□□□ 1.67
SS18-215ENST00000580642 TOPBP1Q92547 1522 aa25.48■■□□□ 1.67
SS18-215ENST00000580642 URB2Q14146 1524 aaKnown RBP25.46■■□□□ 1.67
SS18-215ENST00000580642 WDR62O43379 1518 aa25.4■■□□□ 1.66
SS18-215ENST00000580642 FGD5Q6ZNL6 1462 aa25.35■■□□□ 1.65
SS18-215ENST00000580642 EEA1Q15075 1411 aa25.34■■□□□ 1.65
SS18-215ENST00000580642 THOC2Q8NI27 1593 aaKnown RBP25.32■■□□□ 1.64
SS18-215ENST00000580642 POLA1P09884 1462 aaPredicted RBP25.32■■□□□ 1.64
SS18-215ENST00000580642 SOGA1O94964 1423 aa25.26■■□□□ 1.63
SS18-215ENST00000580642 ABCA10Q8WWZ4 1543 aa25.22■■□□□ 1.63
SS18-215ENST00000580642 KIF27Q86VH2 1401 aa25.2■■□□□ 1.63
SS18-215ENST00000580642 IFT140Q96RY7 1462 aa25.19■■□□□ 1.62
SS18-215ENST00000580642 CUX2O14529 1486 aa25.16■■□□□ 1.62
SS18-215ENST00000580642 RAD54L2Q9Y4B4 1467 aa25.14■■□□□ 1.61
SS18-215ENST00000580642 TARBP1Q13395 1621 aaKnown RBP25.12■■□□□ 1.61
SS18-215ENST00000580642 WDR97A6NE52 1622 aa25.11■■□□□ 1.61
SS18-215ENST00000580642 CSRNP3Q8WYN3 585 aa25.1■■□□□ 1.61
SS18-215ENST00000580642 RUSC2Q8N2Y8 1516 aa25.06■■□□□ 1.6
SS18-215ENST00000580642 FAM9AQ8IZU1 332 aaPredicted RBP25.01■■□□□ 1.59
SS18-215ENST00000580642 ABCA5Q8WWZ7 1642 aa24.98■■□□□ 1.59
SS18-215ENST00000580642 GAPVD1Q14C86 1478 aa24.97■■□□□ 1.59
SS18-215ENST00000580642 IGF1RP08069 1367 aa24.97■■□□□ 1.59
SS18-215ENST00000580642 TDRD9Q8NDG6 1382 aaKnown RBP24.95■■□□□ 1.59
SS18-215ENST00000580642 ERICH3Q5RHP9 1530 aa24.95■■□□□ 1.58
SS18-215ENST00000580642 PRXQ9BXM0 1461 aa24.91■■□□□ 1.58
SS18-215ENST00000580642 KIF21BO75037 1637 aa24.89■■□□□ 1.57
SS18-215ENST00000580642 GRIN2BQ13224 1484 aa24.89■■□□□ 1.57
SS18-215ENST00000580642 ZNF608Q9ULD9 1512 aaPredicted RBP24.87■■□□□ 1.57
SS18-215ENST00000580642 AQRO60306 1485 aaKnown RBP eCLIP24.86■■□□□ 1.575e-6■■■□□ 16.9
SS18-215ENST00000580642 CARMIL1Q5VZK9 1371 aa24.84■■□□□ 1.57
SS18-215ENST00000580642 CUL7Q14999 1698 aa24.84■■□□□ 1.57
SS18-215ENST00000580642 GOLGA3Q08378 1498 aa24.83■■□□□ 1.57
SS18-215ENST00000580642 EIF4G3O43432 1585 aaKnown RBP24.82■■□□□ 1.56
SS18-215ENST00000580642 RAPGEF2Q9Y4G8 1499 aa24.79■■□□□ 1.56
SS18-215ENST00000580642 PBRM1Q86U86 1689 aa24.76■■□□□ 1.55
SS18-215ENST00000580642 FHAD1B1AJZ9 1412 aa24.76■■□□□ 1.55
SS18-215ENST00000580642 MAGI1Q96QZ7 1491 aaPredicted RBP24.76■■□□□ 1.55
SS18-215ENST00000580642 LOC105371045A0A1W2PR82 267 aa24.74■■□□□ 1.55
SS18-215ENST00000580642 TNIKQ9UKE5 1360 aa24.71■■□□□ 1.55
SS18-215ENST00000580642 ADAMTS12P58397 1594 aa24.68■■□□□ 1.54
SS18-215ENST00000580642 SNAPC4Q5SXM2 1469 aa24.66■■□□□ 1.54
SS18-215ENST00000580642 UBTFP17480 764 aaKnown RBP24.65■■□□□ 1.54
SS18-215ENST00000580642 SYNJ2O15056 1496 aa24.63■■□□□ 1.53
SS18-215ENST00000580642 GRIN2AQ12879 1464 aa24.54■■□□□ 1.52
SS18-215ENST00000580642 CHMP7Q8WUX9 453 aaPredicted RBP24.54■■□□□ 1.52
SS18-215ENST00000580642 EHMT2Q96KQ7 1210 aa24.51■■□□□ 1.51
SS18-215ENST00000580642 CEP162Q5TB80 1403 aa24.45■■□□□ 1.51
SS18-215ENST00000580642 NUP160Q12769 1436 aa24.44■■□□□ 1.5
SS18-215ENST00000580642 KIAA0586Q9BVV6 1533 aa24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms