RNA–Protein interactions for RNA: ENST00000580222.5

LIMD2-209, Transcript of LIM domain containing 2, humanhuman

TSL 3

Gene LIMD2, Length 846 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-209ENST00000580222 NISCHQ9Y2I1 1504 aa49.28■■■■■ 5.48
LIMD2-209ENST00000580222 ABCC9O60706 1549 aa45.43■■■■■ 4.86
LIMD2-209ENST00000580222 CCDC180Q9P1Z9 1646 aa44.34■■■■■ 4.69
LIMD2-209ENST00000580222 DNAJC5BQ9UF47 199 aa43.56■■■■■ 4.56
LIMD2-209ENST00000580222 RB1CC1Q8TDY2 1594 aa42.69■■■■■ 4.42
LIMD2-209ENST00000580222 PABPN1Q86U42 306 aaKnown RBP eCLIP42.29■■■■■ 4.36
LIMD2-209ENST00000580222 NACADO15069 1562 aa42.21■■■■■ 4.35
LIMD2-209ENST00000580222 DCAF8L2P0C7V8 631 aa42.08■■■■■ 4.33
LIMD2-209ENST00000580222 UNC13AQ9UPW8 1703 aa41.68■■■■■ 4.26
LIMD2-209ENST00000580222 BICRAQ9NZM4 1560 aa41.63■■■■■ 4.26
LIMD2-209ENST00000580222 MYO15BQ96JP2 1530 aa41.35■■■■■ 4.21
LIMD2-209ENST00000580222 CECR2Q9BXF3 1484 aa40.96■■■■■ 4.15
LIMD2-209ENST00000580222 CC2D2AQ9P2K1 1620 aa40.89■■■■■ 4.14
LIMD2-209ENST00000580222 SHROOM4Q9ULL8 1493 aa40.76■■■■■ 4.12
LIMD2-209ENST00000580222 ZCCHC6Q5VYS8 1495 aaKnown RBP40.64■■■■■ 4.1
LIMD2-209ENST00000580222 EIF4G1Q04637 1599 aaKnown RBP40.61■■■■■ 4.09
LIMD2-209ENST00000580222 DCAF1Q9Y4B6 1507 aa40.56■■■■■ 4.08
LIMD2-209ENST00000580222 SCRIBQ14160 1630 aa40.53■■■■■ 4.08
LIMD2-209ENST00000580222 DNAJC5Q9H3Z4 198 aa40.43■■■■■ 4.06
LIMD2-209ENST00000580222 CUX2O14529 1486 aa39.33■■■■□ 3.89
LIMD2-209ENST00000580222 ERCC6Q03468 1493 aa39.17■■■■□ 3.86
LIMD2-209ENST00000580222 NCAPD3P42695 1498 aa39.11■■■■□ 3.85
LIMD2-209ENST00000580222 ATAD2BQ9ULI0 1458 aa38.89■■■■□ 3.82
LIMD2-209ENST00000580222 NESP48681 1621 aa38.84■■■■□ 3.81
LIMD2-209ENST00000580222 HMGXB3Q12766 1538 aa38.62■■■■□ 3.77
LIMD2-209ENST00000580222 SMARCA2P51531 1590 aa38.59■■■■□ 3.77
LIMD2-209ENST00000580222 SMARCA4P51532 1647 aa38.55■■■■□ 3.76
LIMD2-209ENST00000580222 THOC2Q8NI27 1593 aaKnown RBP38.44■■■■□ 3.74
LIMD2-209ENST00000580222 BAZ1BQ9UIG0 1483 aaKnown RBP38.39■■■■□ 3.74
LIMD2-209ENST00000580222 TRIM41Q8WV44 630 aa38.33■■■■□ 3.73
LIMD2-209ENST00000580222 LAMC3Q9Y6N6 1575 aa38.21■■■■□ 3.71
LIMD2-209ENST00000580222 BAZ1AQ9NRL2 1556 aaPredicted RBP38.2■■■■□ 3.71
LIMD2-209ENST00000580222 PEG3Q9GZU2 1588 aa38.15■■■■□ 3.7
LIMD2-209ENST00000580222 KIF21AQ7Z4S6 1674 aa38.1■■■■□ 3.69
LIMD2-209ENST00000580222 PDS5BQ9NTI5 1447 aa38.09■■■■□ 3.69
LIMD2-209ENST00000580222 MROH2BQ7Z745 1585 aa38.03■■■■□ 3.68
LIMD2-209ENST00000580222 CADPSQ9ULU8 1353 aa37.9■■■■□ 3.66
LIMD2-209ENST00000580222 MRC2Q9UBG0 1479 aa37.83■■■■□ 3.65
LIMD2-209ENST00000580222 WDR62O43379 1518 aa37.74■■■■□ 3.63
LIMD2-209ENST00000580222 OSCARQ8IYS5 282 aa37.53■■■■□ 3.6
LIMD2-209ENST00000580222 CEP164Q9UPV0 1460 aa37.49■■■■□ 3.59
LIMD2-209ENST00000580222 WIZO95785 1651 aa37.46■■■■□ 3.59
LIMD2-209ENST00000580222 FANCD2Q9BXW9 1451 aa37.44■■■■□ 3.58
LIMD2-209ENST00000580222 CFTRP13569 1480 aa37.27■■■■□ 3.56
LIMD2-209ENST00000580222 URB2Q14146 1524 aaKnown RBP37.23■■■■□ 3.55
LIMD2-209ENST00000580222 RIMBP3CA6NJZ7 1639 aa37.04■■■■□ 3.52
LIMD2-209ENST00000580222 RIMBP3BA6NNM3 1639 aa37.04■■■■□ 3.52
LIMD2-209ENST00000580222 RIMBP3Q9UFD9 1639 aa37.04■■■■□ 3.52
LIMD2-209ENST00000580222 RSF1Q96T23 1441 aaPredicted RBP36.97■■■■□ 3.51
LIMD2-209ENST00000580222 ZNF608Q9ULD9 1512 aaPredicted RBP36.95■■■■□ 3.5
LIMD2-209ENST00000580222 ARHGEF11O15085 1522 aa36.88■■■■□ 3.49
LIMD2-209ENST00000580222 TOP2AP11388 1531 aaKnown RBP36.88■■■■□ 3.49
LIMD2-209ENST00000580222 IFT140Q96RY7 1462 aa36.79■■■■□ 3.48
LIMD2-209ENST00000580222 CYB5RLQ6IPT4 315 aa36.78■■■■□ 3.48
LIMD2-209ENST00000580222 TOPBP1Q92547 1522 aa36.64■■■■□ 3.46
LIMD2-209ENST00000580222 CCDC88BA6NC98 1476 aa36.6■■■■□ 3.45
LIMD2-209ENST00000580222 TRHP20396 242 aaPredicted RBP36.57■■■■□ 3.44
LIMD2-209ENST00000580222 EIF4G3O43432 1585 aaKnown RBP36.53■■■■□ 3.44
LIMD2-209ENST00000580222 PRDM2Q13029 1718 aa36.51■■■■□ 3.44
LIMD2-209ENST00000580222 AQRO60306 1485 aaKnown RBP eCLIP36.51■■■■□ 3.44
LIMD2-209ENST00000580222 ARAP1Q96P48 1450 aa36.51■■■■□ 3.44
LIMD2-209ENST00000580222 FBLN2P98095 1184 aa36.41■■■■□ 3.42
LIMD2-209ENST00000580222 ABCC8Q09428 1581 aa36.37■■■■□ 3.41
LIMD2-209ENST00000580222 CHD1O14646 1710 aa36.36■■■■□ 3.41
LIMD2-209ENST00000580222 TARBP1Q13395 1621 aaKnown RBP36.35■■■■□ 3.41
LIMD2-209ENST00000580222 DNMBPQ6XZF7 1577 aa36.35■■■■□ 3.41
LIMD2-209ENST00000580222 POLA1P09884 1462 aaPredicted RBP36.23■■■■□ 3.39
LIMD2-209ENST00000580222 RAD54L2Q9Y4B4 1467 aa36.19■■■■□ 3.38
LIMD2-209ENST00000580222 TDRD9Q8NDG6 1382 aaKnown RBP36.18■■■■□ 3.38
LIMD2-209ENST00000580222 SOGA1O94964 1423 aa36.07■■■■□ 3.36
LIMD2-209ENST00000580222 SNAPC4Q5SXM2 1469 aa36.03■■■■□ 3.36
LIMD2-209ENST00000580222 CLASP1Q7Z460 1538 aa36.03■■■■□ 3.36
LIMD2-209ENST00000580222 AEBP2Q6ZN18 517 aaPredicted RBP36.02■■■■□ 3.36
LIMD2-209ENST00000580222 CHMP7Q8WUX9 453 aaPredicted RBP35.97■■■■□ 3.35
LIMD2-209ENST00000580222 FGD5Q6ZNL6 1462 aa35.87■■■■□ 3.33
LIMD2-209ENST00000580222 SYNJ1O43426 1573 aa35.82■■■■□ 3.32
LIMD2-209ENST00000580222 MAGI1Q96QZ7 1491 aaPredicted RBP35.81■■■■□ 3.32
LIMD2-209ENST00000580222 GRIN2BQ13224 1484 aa35.79■■■■□ 3.32
LIMD2-209ENST00000580222 SYNJ2O15056 1496 aa35.75■■■■□ 3.31
LIMD2-209ENST00000580222 CUX1P39880 1505 aa35.75■■■■□ 3.31
LIMD2-209ENST00000580222 WDR97A6NE52 1622 aa35.73■■■■□ 3.31
LIMD2-209ENST00000580222 GAPVD1Q14C86 1478 aa35.73■■■■□ 3.31
LIMD2-209ENST00000580222 ERCC6L2Q5T890 1561 aa35.53■■■■□ 3.28
LIMD2-209ENST00000580222 PBRM1Q86U86 1689 aa35.44■■■■□ 3.26
LIMD2-209ENST00000580222 ABCA10Q8WWZ4 1543 aa35.39■■■■□ 3.26
LIMD2-209ENST00000580222 ABCA5Q8WWZ7 1642 aa35.36■■■■□ 3.25
LIMD2-209ENST00000580222 GRIN2AQ12879 1464 aa35.33■■■■□ 3.25
LIMD2-209ENST00000580222 CEP170Q5SW79 1584 aa35.29■■■■□ 3.24
LIMD2-209ENST00000580222 NUP160Q12769 1436 aa35.28■■■■□ 3.24
LIMD2-209ENST00000580222 ADAMTS12P58397 1594 aa35.16■■■■□ 3.22
LIMD2-209ENST00000580222 SHROOM2Q13796 1616 aa35.12■■■■□ 3.21
LIMD2-209ENST00000580222 WRNQ14191 1432 aaPredicted RBP eCLIP35.1■■■■□ 3.21
LIMD2-209ENST00000580222 FHAD1B1AJZ9 1412 aa35.08■■■■□ 3.21
LIMD2-209ENST00000580222 KIF13AQ9H1H9 1805 aa35.05■■■■□ 3.2
LIMD2-209ENST00000580222 PRG4Q92954 1404 aaPredicted RBP35.03■■■■□ 3.2
LIMD2-209ENST00000580222 FAM69CQ0P6D2 419 aa34.98■■■■□ 3.19
LIMD2-209ENST00000580222 JPH4Q96JJ6 628 aa34.98■■■■□ 3.19
LIMD2-209ENST00000580222 ABCC10Q5T3U5 1492 aa34.89■■■■□ 3.18
LIMD2-209ENST00000580222 KDM4FA0A1W2PPD8 638 aa34.88■■■■□ 3.17
LIMD2-209ENST00000580222 ERICH3Q5RHP9 1530 aa34.87■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms