RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 NISCHQ9Y2I1 1504 aa58.34■■■■■ 6.93
SHMT1-207ENST00000580002 CCDC180Q9P1Z9 1646 aa50.99■■■■■ 5.75
SHMT1-207ENST00000580002 ABCC9O60706 1549 aa49.09■■■■■ 5.45
SHMT1-207ENST00000580002 ZCCHC6Q5VYS8 1495 aaKnown RBP48.85■■■■■ 5.41
SHMT1-207ENST00000580002 DCAF8L2P0C7V8 631 aa48.6■■■■■ 5.37
SHMT1-207ENST00000580002 DCAF1Q9Y4B6 1507 aa48.1■■■■■ 5.29
SHMT1-207ENST00000580002 MYO15BQ96JP2 1530 aa47.74■■■■■ 5.23
SHMT1-207ENST00000580002 NACADO15069 1562 aa47.71■■■■■ 5.23
SHMT1-207ENST00000580002 RB1CC1Q8TDY2 1594 aa47.46■■■■■ 5.19
SHMT1-207ENST00000580002 SHROOM4Q9ULL8 1493 aa47.36■■■■■ 5.17
SHMT1-207ENST00000580002 SCRIBQ14160 1630 aa47.01■■■■■ 5.12
SHMT1-207ENST00000580002 UNC13AQ9UPW8 1703 aa46.55■■■■■ 5.04
SHMT1-207ENST00000580002 PABPN1Q86U42 306 aaKnown RBP eCLIP46.28■■■■■ 5
SHMT1-207ENST00000580002 BICRAQ9NZM4 1560 aa46.18■■■■■ 4.98
SHMT1-207ENST00000580002 CECR2Q9BXF3 1484 aa45.53■■■■■ 4.88
SHMT1-207ENST00000580002 SUPT5HO00267 1087 aaKnown RBP45.22■■■■■ 4.83
SHMT1-207ENST00000580002 MROH2BQ7Z745 1585 aa45.13■■■■■ 4.82
SHMT1-207ENST00000580002 RSF1Q96T23 1441 aaPredicted RBP45.08■■■■■ 4.81
SHMT1-207ENST00000580002 BAZ1AQ9NRL2 1556 aaPredicted RBP45.02■■■■■ 4.8
SHMT1-207ENST00000580002 SMARCA4P51532 1647 aa44.95■■■■■ 4.79
SHMT1-207ENST00000580002 EIF4G1Q04637 1599 aaKnown RBP44.79■■■■■ 4.76
SHMT1-207ENST00000580002 WIZO95785 1651 aa44.7■■■■■ 4.75
SHMT1-207ENST00000580002 ATAD2BQ9ULI0 1458 aa44.44■■■■■ 4.7
SHMT1-207ENST00000580002 PEG3Q9GZU2 1588 aa44.37■■■■■ 4.69
SHMT1-207ENST00000580002 CC2D2AQ9P2K1 1620 aa44.32■■■■■ 4.69
SHMT1-207ENST00000580002 SMARCA2P51531 1590 aa44.26■■■■■ 4.68
SHMT1-207ENST00000580002 TOP2AP11388 1531 aaKnown RBP44.12■■■■■ 4.65
SHMT1-207ENST00000580002 NCAPD3P42695 1498 aa44.12■■■■■ 4.65
SHMT1-207ENST00000580002 BAZ1BQ9UIG0 1483 aaKnown RBP44.1■■■■■ 4.65
SHMT1-207ENST00000580002 DNAJC5BQ9UF47 199 aa44.08■■■■■ 4.65
SHMT1-207ENST00000580002 HMGXB3Q12766 1538 aa43.92■■■■■ 4.62
SHMT1-207ENST00000580002 CCDC88BA6NC98 1476 aa43.77■■■■■ 4.6
SHMT1-207ENST00000580002 CADPSQ9ULU8 1353 aa42.98■■■■■ 4.47
SHMT1-207ENST00000580002 CFTRP13569 1480 aa42.97■■■■■ 4.47
SHMT1-207ENST00000580002 NESP48681 1621 aa42.93■■■■■ 4.46
SHMT1-207ENST00000580002 CHIC1Q5VXU3 224 aa42.91■■■■■ 4.46
SHMT1-207ENST00000580002 ABCC8Q09428 1581 aa42.68■■■■■ 4.42
SHMT1-207ENST00000580002 LAMC3Q9Y6N6 1575 aa42.65■■■■■ 4.42
SHMT1-207ENST00000580002 PRDM2Q13029 1718 aa42.53■■■■■ 4.4
SHMT1-207ENST00000580002 FANCD2Q9BXW9 1451 aa42.5■■■■■ 4.39
SHMT1-207ENST00000580002 TRIM41Q8WV44 630 aa42.46■■■■■ 4.39
SHMT1-207ENST00000580002 WRNQ14191 1432 aaPredicted RBP eCLIP42.39■■■■■ 4.38
SHMT1-207ENST00000580002 PDS5BQ9NTI5 1447 aa42.38■■■■■ 4.37
SHMT1-207ENST00000580002 SYNJ1O43426 1573 aa42.28■■■■■ 4.36
SHMT1-207ENST00000580002 KIF21AQ7Z4S6 1674 aa42.27■■■■■ 4.36
SHMT1-207ENST00000580002 CEP164Q9UPV0 1460 aa42.25■■■■■ 4.35
SHMT1-207ENST00000580002 CUX1P39880 1505 aa42.21■■■■■ 4.35
SHMT1-207ENST00000580002 TOP2BQ02880 1626 aa42.07■■■■■ 4.32
SHMT1-207ENST00000580002 URB2Q14146 1524 aaKnown RBP42.05■■■■■ 4.32
SHMT1-207ENST00000580002 ERCC6Q03468 1493 aa42.05■■■■■ 4.32
SHMT1-207ENST00000580002 BIVM-ERCC5R4GMW8 1640 aa42.01■■■■■ 4.32
SHMT1-207ENST00000580002 TOPBP1Q92547 1522 aa41.97■■■■■ 4.31
SHMT1-207ENST00000580002 DNMBPQ6XZF7 1577 aa41.93■■■■■ 4.3
SHMT1-207ENST00000580002 MRC2Q9UBG0 1479 aa41.9■■■■■ 4.3
SHMT1-207ENST00000580002 FGD5Q6ZNL6 1462 aa41.83■■■■■ 4.29
SHMT1-207ENST00000580002 FAM9AQ8IZU1 332 aaPredicted RBP41.82■■■■■ 4.29
SHMT1-207ENST00000580002 SOGA1O94964 1423 aa41.78■■■■■ 4.28
SHMT1-207ENST00000580002 POLA1P09884 1462 aaPredicted RBP41.73■■■■■ 4.27
SHMT1-207ENST00000580002 THOC2Q8NI27 1593 aaKnown RBP41.73■■■■■ 4.27
SHMT1-207ENST00000580002 RUSC2Q8N2Y8 1516 aa41.71■■■■■ 4.27
SHMT1-207ENST00000580002 WDR62O43379 1518 aa41.68■■■■■ 4.26
SHMT1-207ENST00000580002 RAD54L2Q9Y4B4 1467 aa41.68■■■■■ 4.26
SHMT1-207ENST00000580002 CUX2O14529 1486 aa41.51■■■■■ 4.24
SHMT1-207ENST00000580002 ABCA10Q8WWZ4 1543 aa41.39■■■■■ 4.22
SHMT1-207ENST00000580002 TARBP1Q13395 1621 aaKnown RBP41.37■■■■■ 4.21
SHMT1-207ENST00000580002 LOC105371045A0A1W2PR82 267 aa41.37■■■■■ 4.21
SHMT1-207ENST00000580002 EHMT2Q96KQ7 1210 aa41.35■■■■■ 4.21
SHMT1-207ENST00000580002 TDRD9Q8NDG6 1382 aaKnown RBP41.34■■■■■ 4.21
SHMT1-207ENST00000580002 CSRNP3Q8WYN3 585 aa41.34■■■■■ 4.21
SHMT1-207ENST00000580002 KIF27Q86VH2 1401 aa41.34■■■■■ 4.21
SHMT1-207ENST00000580002 EEA1Q15075 1411 aa41.3■■■■■ 4.2
SHMT1-207ENST00000580002 WDR97A6NE52 1622 aa41.28■■■■■ 4.2
SHMT1-207ENST00000580002 IFT140Q96RY7 1462 aa41.27■■■■■ 4.2
SHMT1-207ENST00000580002 ZNF608Q9ULD9 1512 aaPredicted RBP41.22■■■■■ 4.19
SHMT1-207ENST00000580002 AQRO60306 1485 aaKnown RBP eCLIP41.18■■■■■ 4.18
SHMT1-207ENST00000580002 IGF1RP08069 1367 aa41.16■■■■■ 4.18
SHMT1-207ENST00000580002 GAPVD1Q14C86 1478 aa41.09■■■■■ 4.17
SHMT1-207ENST00000580002 ABCA5Q8WWZ7 1642 aa41.09■■■■■ 4.17
SHMT1-207ENST00000580002 PRXQ9BXM0 1461 aa40.94■■■■■ 4.14
SHMT1-207ENST00000580002 EIF4G3O43432 1585 aaKnown RBP40.93■■■■■ 4.14
SHMT1-207ENST00000580002 RAPGEF2Q9Y4G8 1499 aa40.91■■■■■ 4.14
SHMT1-207ENST00000580002 CARMIL1Q5VZK9 1371 aa40.9■■■■■ 4.14
SHMT1-207ENST00000580002 ERICH3Q5RHP9 1530 aa40.85■■■■■ 4.13
SHMT1-207ENST00000580002 KIF21BO75037 1637 aa40.84■■■■■ 4.13
SHMT1-207ENST00000580002 GRIN2BQ13224 1484 aa40.84■■■■■ 4.13
SHMT1-207ENST00000580002 PBRM1Q86U86 1689 aa40.83■■■■■ 4.13
SHMT1-207ENST00000580002 GOLGA3Q08378 1498 aa40.79■■■■■ 4.12
SHMT1-207ENST00000580002 UBTFP17480 764 aaKnown RBP40.77■■■■■ 4.12
SHMT1-207ENST00000580002 SNAPC4Q5SXM2 1469 aa40.71■■■■■ 4.11
SHMT1-207ENST00000580002 CUL7Q14999 1698 aa40.68■■■■■ 4.1
SHMT1-207ENST00000580002 FHAD1B1AJZ9 1412 aa40.61■■■■■ 4.09
SHMT1-207ENST00000580002 ADAMTS12P58397 1594 aa40.61■■■■■ 4.09
SHMT1-207ENST00000580002 TNIKQ9UKE5 1360 aa40.58■■■■■ 4.09
SHMT1-207ENST00000580002 MAGI1Q96QZ7 1491 aaPredicted RBP40.52■■■■■ 4.08
SHMT1-207ENST00000580002 FBLN2P98095 1184 aa40.49■■■■■ 4.07
SHMT1-207ENST00000580002 RANGAP1P46060 587 aaPredicted RBP40.46■■■■■ 4.07
SHMT1-207ENST00000580002 CHMP7Q8WUX9 453 aaPredicted RBP40.44■■■■■ 4.06
SHMT1-207ENST00000580002 SYNJ2O15056 1496 aa40.42■■■■■ 4.06
SHMT1-207ENST00000580002 GRIN2AQ12879 1464 aa40.36■■■■■ 4.05
SHMT1-207ENST00000580002 CEP162Q5TB80 1403 aa40.34■■■■■ 4.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms