RNA–Protein interactions for RNA: ENST00000579727.5

RARA-209, Transcript of retinoic acid receptor alpha, human

TSL 4

Gene RARA, Length 564 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RARA-209	ENST00000579727	NISCH	Q9Y2I1	1504 aa		39.67	■■■■□ 3.94
RARA-209	ENST00000579727	CCDC180	Q9P1Z9	1646 aa		35.28	■■■■□ 3.24
RARA-209	ENST00000579727	ABCC9	O60706	1549 aa		35.01	■■■■□ 3.19
RARA-209	ENST00000579727	DNAJC5B	Q9UF47	199 aa		33.53	■■■□□ 2.96
RARA-209	ENST00000579727	DCAF8L2	P0C7V8	631 aa		33.19	■■■□□ 2.9
RARA-209	ENST00000579727	RB1CC1	Q8TDY2	1594 aa		33.17	■■■□□ 2.9
RARA-209	ENST00000579727	NACAD	O15069	1562 aa		33.1	■■■□□ 2.89
RARA-209	ENST00000579727	ZCCHC6	Q5VYS8	1495 aa	Known RBP	33.07	■■■□□ 2.88
RARA-209	ENST00000579727	MYO15B	Q96JP2	1530 aa		32.84	■■■□□ 2.85
RARA-209	ENST00000579727	DCAF1	Q9Y4B6	1507 aa		32.75	■■■□□ 2.83
RARA-209	ENST00000579727	UNC13A	Q9UPW8	1703 aa		32.56	■■■□□ 2.8
RARA-209	ENST00000579727	PABPN1	Q86U42	306 aa	Known RBP eCLIP	32.43	■■■□□ 2.78
RARA-209	ENST00000579727	SCRIB	Q14160	1630 aa		32.3	■■■□□ 2.76
RARA-209	ENST00000579727	BICRA	Q9NZM4	1560 aa		32.21	■■■□□ 2.75
RARA-209	ENST00000579727	SHROOM4	Q9ULL8	1493 aa		31.73	■■■□□ 2.67
RARA-209	ENST00000579727	CC2D2A	Q9P2K1	1620 aa		31.63	■■■□□ 2.65
RARA-209	ENST00000579727	CECR2	Q9BXF3	1484 aa		31.58	■■■□□ 2.65
RARA-209	ENST00000579727	EIF4G1	Q04637	1599 aa	Known RBP	31.35	■■■□□ 2.61
RARA-209	ENST00000579727	DNAJC5	Q9H3Z4	198 aa		31.24	■■■□□ 2.59
RARA-209	ENST00000579727	SMARCA4	P51532	1647 aa		30.83	■■■□□ 2.53
RARA-209	ENST00000579727	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.75	■■■□□ 2.51
RARA-209	ENST00000579727	MROH2B	Q7Z745	1585 aa		30.63	■■■□□ 2.49
RARA-209	ENST00000579727	ATAD2B	Q9ULI0	1458 aa		30.59	■■■□□ 2.49
RARA-209	ENST00000579727	SMARCA2	P51531	1590 aa		30.54	■■■□□ 2.48
RARA-209	ENST00000579727	NCAPD3	P42695	1498 aa		30.51	■■■□□ 2.48
RARA-209	ENST00000579727	PEG3	Q9GZU2	1588 aa		30.45	■■■□□ 2.47
RARA-209	ENST00000579727	HMGXB3	Q12766	1538 aa		30.42	■■■□□ 2.46
RARA-209	ENST00000579727	CUX2	O14529	1486 aa		30.41	■■■□□ 2.46
RARA-209	ENST00000579727	BAZ1B	Q9UIG0	1483 aa	Known RBP	30.38	■■■□□ 2.45
RARA-209	ENST00000579727	WIZ	O95785	1651 aa		30.36	■■■□□ 2.45
RARA-209	ENST00000579727	RSF1	Q96T23	1441 aa	Predicted RBP	30.24	■■■□□ 2.43
RARA-209	ENST00000579727	ERCC6	Q03468	1493 aa		30.2	■■■□□ 2.43
RARA-209	ENST00000579727	TOP2A	P11388	1531 aa	Known RBP	29.97	■■■□□ 2.39
RARA-209	ENST00000579727	NES	P48681	1621 aa		29.92	■■■□□ 2.38
RARA-209	ENST00000579727	THOC2	Q8NI27	1593 aa	Known RBP	29.78	■■■□□ 2.36
RARA-209	ENST00000579727	LAMC3	Q9Y6N6	1575 aa		29.77	■■■□□ 2.36
RARA-209	ENST00000579727	CADPS	Q9ULU8	1353 aa		29.64	■■■□□ 2.34
RARA-209	ENST00000579727	KIF21A	Q7Z4S6	1674 aa		29.61	■■■□□ 2.33
RARA-209	ENST00000579727	CCDC88B	A6NC98	1476 aa		29.61	■■■□□ 2.33
RARA-209	ENST00000579727	SUPT5H	O00267	1087 aa	Known RBP	29.58	■■■□□ 2.33
RARA-209	ENST00000579727	TRIM41	Q8WV44	630 aa		29.56	■■■□□ 2.32
RARA-209	ENST00000579727	PDS5B	Q9NTI5	1447 aa		29.51	■■■□□ 2.31
RARA-209	ENST00000579727	CFTR	P13569	1480 aa		29.48	■■■□□ 2.31
RARA-209	ENST00000579727	PRDM2	Q13029	1718 aa		29.4	■■■□□ 2.3
RARA-209	ENST00000579727	FANCD2	Q9BXW9	1451 aa		29.36	■■■□□ 2.29
RARA-209	ENST00000579727	CEP164	Q9UPV0	1460 aa		29.33	■■■□□ 2.29
RARA-209	ENST00000579727	MRC2	Q9UBG0	1479 aa		29.27	■■■□□ 2.28
RARA-209	ENST00000579727	WDR62	O43379	1518 aa		29.18	■■■□□ 2.26
RARA-209	ENST00000579727	URB2	Q14146	1524 aa	Known RBP	29.1	■■■□□ 2.25
RARA-209	ENST00000579727	TOPBP1	Q92547	1522 aa		28.91	■■■□□ 2.22
RARA-209	ENST00000579727	DNMBP	Q6XZF7	1577 aa		28.88	■■■□□ 2.21
RARA-209	ENST00000579727	OSCAR	Q8IYS5	282 aa		28.84	■■■□□ 2.21
RARA-209	ENST00000579727	ABCC8	Q09428	1581 aa		28.81	■■■□□ 2.2
RARA-209	ENST00000579727	RIMBP3C	A6NJZ7	1639 aa		28.73	■■■□□ 2.19
RARA-209	ENST00000579727	RIMBP3B	A6NNM3	1639 aa		28.73	■■■□□ 2.19
RARA-209	ENST00000579727	RIMBP3	Q9UFD9	1639 aa		28.73	■■■□□ 2.19
RARA-209	ENST00000579727	CUX1	P39880	1505 aa		28.73	■■■□□ 2.19
RARA-209	ENST00000579727	IFT140	Q96RY7	1462 aa		28.68	■■■□□ 2.18
RARA-209	ENST00000579727	POLA1	P09884	1462 aa	Predicted RBP	28.67	■■■□□ 2.18
RARA-209	ENST00000579727	FGD5	Q6ZNL6	1462 aa		28.63	■■■□□ 2.17
RARA-209	ENST00000579727	ZNF608	Q9ULD9	1512 aa	Predicted RBP	28.63	■■■□□ 2.17
RARA-209	ENST00000579727	TARBP1	Q13395	1621 aa	Known RBP	28.61	■■■□□ 2.17
RARA-209	ENST00000579727	RAD54L2	Q9Y4B4	1467 aa		28.59	■■■□□ 2.17
RARA-209	ENST00000579727	EIF4G3	O43432	1585 aa	Known RBP	28.54	■■■□□ 2.16
RARA-209	ENST00000579727	SYNJ1	O43426	1573 aa		28.54	■■■□□ 2.16
RARA-209	ENST00000579727	SOGA1	O94964	1423 aa		28.52	■■■□□ 2.16
RARA-209	ENST00000579727	WRN	Q14191	1432 aa	Predicted RBP eCLIP	28.52	■■■□□ 2.16
RARA-209	ENST00000579727	BIVM-ERCC5	R4GMW8	1640 aa		28.51	■■■□□ 2.15
RARA-209	ENST00000579727	ARHGEF11	O15085	1522 aa		28.5	■■■□□ 2.15
RARA-209	ENST00000579727	TOP2B	Q02880	1626 aa		28.48	■■■□□ 2.15
RARA-209	ENST00000579727	AQR	O60306	1485 aa	Known RBP eCLIP	28.44	■■■□□ 2.14	6e-7	■■■□□ 15.2
RARA-209	ENST00000579727	WDR97	A6NE52	1622 aa		28.43	■■■□□ 2.14
RARA-209	ENST00000579727	TDRD9	Q8NDG6	1382 aa	Known RBP	28.39	■■■□□ 2.14
RARA-209	ENST00000579727	ABCA10	Q8WWZ4	1543 aa		28.29	■■■□□ 2.12
RARA-209	ENST00000579727	CHD1	O14646	1710 aa		28.27	■■■□□ 2.12
RARA-209	ENST00000579727	PBRM1	Q86U86	1689 aa		28.26	■■■□□ 2.11
RARA-209	ENST00000579727	CYB5RL	Q6IPT4	315 aa		28.25	■■■□□ 2.11
RARA-209	ENST00000579727	ABCA5	Q8WWZ7	1642 aa		28.25	■■■□□ 2.11
RARA-209	ENST00000579727	SNAPC4	Q5SXM2	1469 aa		28.21	■■■□□ 2.11
RARA-209	ENST00000579727	GAPVD1	Q14C86	1478 aa		28.2	■■■□□ 2.1
RARA-209	ENST00000579727	GRIN2B	Q13224	1484 aa		28.18	■■■□□ 2.1
RARA-209	ENST00000579727	ARAP1	Q96P48	1450 aa		28.18	■■■□□ 2.1
RARA-209	ENST00000579727	TRH	P20396	242 aa	Predicted RBP	28.16	■■■□□ 2.1
RARA-209	ENST00000579727	FBLN2	P98095	1184 aa		28.1	■■■□□ 2.09
RARA-209	ENST00000579727	MAGI1	Q96QZ7	1491 aa	Predicted RBP	28.08	■■■□□ 2.09
RARA-209	ENST00000579727	SYNJ2	O15056	1496 aa		28	■■■□□ 2.07
RARA-209	ENST00000579727	ADAMTS12	P58397	1594 aa		27.99	■■■□□ 2.07
RARA-209	ENST00000579727	CHMP7	Q8WUX9	453 aa	Predicted RBP	27.97	■■■□□ 2.07
RARA-209	ENST00000579727	ERICH3	Q5RHP9	1530 aa		27.95	■■■□□ 2.06
RARA-209	ENST00000579727	KIF27	Q86VH2	1401 aa		27.89	■■■□□ 2.06
RARA-209	ENST00000579727	FHAD1	B1AJZ9	1412 aa		27.85	■■■□□ 2.05
RARA-209	ENST00000579727	GRIN2A	Q12879	1464 aa		27.84	■■■□□ 2.05
RARA-209	ENST00000579727	AEBP2	Q6ZN18	517 aa	Predicted RBP	27.84	■■■□□ 2.05
RARA-209	ENST00000579727	CLASP1	Q7Z460	1538 aa		27.82	■■■□□ 2.04
RARA-209	ENST00000579727	RUSC2	Q8N2Y8	1516 aa		27.77	■■■□□ 2.04
RARA-209	ENST00000579727	IGF1R	P08069	1367 aa		27.76	■■■□□ 2.03
RARA-209	ENST00000579727	CUL7	Q14999	1698 aa		27.76	■■■□□ 2.03
RARA-209	ENST00000579727	CEP170	Q5SW79	1584 aa		27.76	■■■□□ 2.03
RARA-209	ENST00000579727	NUP160	Q12769	1436 aa		27.68	■■■□□ 2.02
RARA-209	ENST00000579727	CARMIL1	Q5VZK9	1371 aa		27.61	■■■□□ 2.01

Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms