RNA–Protein interactions for RNA: ENST00000579358.1

MKS1-208, Transcript of Meckel syndrome, type 1, humanhuman

TSL 4

Gene MKS1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-208ENST00000579358 NISCHQ9Y2I1 1504 aa24.3■■□□□ 1.48
MKS1-208ENST00000579358 CCDC180Q9P1Z9 1646 aa21.56■■□□□ 1.04
MKS1-208ENST00000579358 ABCC9O60706 1549 aa21■□□□□ 0.95
MKS1-208ENST00000579358 NACADO15069 1562 aa20.29■□□□□ 0.84
MKS1-208ENST00000579358 ZCCHC6Q5VYS8 1495 aaKnown RBP20.28■□□□□ 0.84
MKS1-208ENST00000579358 RB1CC1Q8TDY2 1594 aa20.27■□□□□ 0.84
MKS1-208ENST00000579358 MYO15BQ96JP2 1530 aa20.24■□□□□ 0.83
MKS1-208ENST00000579358 DCAF8L2P0C7V8 631 aa20.18■□□□□ 0.82
MKS1-208ENST00000579358 DCAF1Q9Y4B6 1507 aa20.16■□□□□ 0.82
MKS1-208ENST00000579358 UNC13AQ9UPW8 1703 aa19.7■□□□□ 0.74
MKS1-208ENST00000579358 SCRIBQ14160 1630 aa19.65■□□□□ 0.74
MKS1-208ENST00000579358 BICRAQ9NZM4 1560 aa19.63■□□□□ 0.73
MKS1-208ENST00000579358 PABPN1Q86U42 306 aaKnown RBP eCLIP19.63■□□□□ 0.73
MKS1-208ENST00000579358 SHROOM4Q9ULL8 1493 aa19.54■□□□□ 0.72
MKS1-208ENST00000579358 DNAJC5BQ9UF47 199 aa19.2■□□□□ 0.66
MKS1-208ENST00000579358 EIF4G1Q04637 1599 aaKnown RBP19.13■□□□□ 0.65
MKS1-208ENST00000579358 CC2D2AQ9P2K1 1620 aa19■□□□□ 0.63
MKS1-208ENST00000579358 CECR2Q9BXF3 1484 aa18.9■□□□□ 0.62
MKS1-208ENST00000579358 BAZ1AQ9NRL2 1556 aaPredicted RBP18.85■□□□□ 0.61
MKS1-208ENST00000579358 SMARCA4P51532 1647 aa18.82■□□□□ 0.6
MKS1-208ENST00000579358 NCAPD3P42695 1498 aa18.73■□□□□ 0.59
MKS1-208ENST00000579358 ATAD2BQ9ULI0 1458 aa18.73■□□□□ 0.59
MKS1-208ENST00000579358 SMARCA2P51531 1590 aa18.72■□□□□ 0.59
MKS1-208ENST00000579358 MROH2BQ7Z745 1585 aa18.71■□□□□ 0.59
MKS1-208ENST00000579358 PEG3Q9GZU2 1588 aa18.68■□□□□ 0.58
MKS1-208ENST00000579358 HMGXB3Q12766 1538 aa18.64■□□□□ 0.58
MKS1-208ENST00000579358 BAZ1BQ9UIG0 1483 aaKnown RBP18.57■□□□□ 0.56
MKS1-208ENST00000579358 RSF1Q96T23 1441 aaPredicted RBP18.54■□□□□ 0.56
MKS1-208ENST00000579358 WIZO95785 1651 aa18.47■□□□□ 0.55
MKS1-208ENST00000579358 TOP2AP11388 1531 aaKnown RBP18.34■□□□□ 0.53
MKS1-208ENST00000579358 LAMC3Q9Y6N6 1575 aa18.21■□□□□ 0.51
MKS1-208ENST00000579358 NESP48681 1621 aa18.19■□□□□ 0.5
MKS1-208ENST00000579358 CADPSQ9ULU8 1353 aa18.17■□□□□ 0.5
MKS1-208ENST00000579358 ERCC6Q03468 1493 aa18.13■□□□□ 0.49
MKS1-208ENST00000579358 CCDC88BA6NC98 1476 aa18.1■□□□□ 0.49
MKS1-208ENST00000579358 CFTRP13569 1480 aa18.09■□□□□ 0.49
MKS1-208ENST00000579358 PDS5BQ9NTI5 1447 aa18.09■□□□□ 0.49
MKS1-208ENST00000579358 SUPT5HO00267 1087 aaKnown RBP18.05■□□□□ 0.48
MKS1-208ENST00000579358 CUX2O14529 1486 aa17.95■□□□□ 0.46
MKS1-208ENST00000579358 FANCD2Q9BXW9 1451 aa17.95■□□□□ 0.46
MKS1-208ENST00000579358 KIF21AQ7Z4S6 1674 aa17.93■□□□□ 0.46
MKS1-208ENST00000579358 THOC2Q8NI27 1593 aaKnown RBP17.93■□□□□ 0.46
MKS1-208ENST00000579358 CEP164Q9UPV0 1460 aa17.93■□□□□ 0.46
MKS1-208ENST00000579358 MRC2Q9UBG0 1479 aa17.89■□□□□ 0.45
MKS1-208ENST00000579358 PRDM2Q13029 1718 aa17.86■□□□□ 0.45
MKS1-208ENST00000579358 WDR62O43379 1518 aa17.83■□□□□ 0.45
MKS1-208ENST00000579358 URB2Q14146 1524 aaKnown RBP17.76■□□□□ 0.43
MKS1-208ENST00000579358 ABCC8Q09428 1581 aa17.7■□□□□ 0.42
MKS1-208ENST00000579358 TOPBP1Q92547 1522 aa17.67■□□□□ 0.42
MKS1-208ENST00000579358 DNMBPQ6XZF7 1577 aa17.66■□□□□ 0.42
MKS1-208ENST00000579358 IFT140Q96RY7 1462 aa17.56■□□□□ 0.4
MKS1-208ENST00000579358 CUX1P39880 1505 aa17.55■□□□□ 0.4
MKS1-208ENST00000579358 POLA1P09884 1462 aaPredicted RBP17.53■□□□□ 0.4
MKS1-208ENST00000579358 WRNQ14191 1432 aaPredicted RBP eCLIP17.49■□□□□ 0.39
MKS1-208ENST00000579358 FGD5Q6ZNL6 1462 aa17.49■□□□□ 0.39
MKS1-208ENST00000579358 TARBP1Q13395 1621 aaKnown RBP17.45■□□□□ 0.38
MKS1-208ENST00000579358 SOGA1O94964 1423 aa17.45■□□□□ 0.38
MKS1-208ENST00000579358 ZNF608Q9ULD9 1512 aaPredicted RBP17.43■□□□□ 0.38
MKS1-208ENST00000579358 TOP2BQ02880 1626 aa17.43■□□□□ 0.38
MKS1-208ENST00000579358 RAD54L2Q9Y4B4 1467 aa17.42■□□□□ 0.38
MKS1-208ENST00000579358 BIVM-ERCC5R4GMW8 1640 aa17.41■□□□□ 0.38
MKS1-208ENST00000579358 SYNJ1O43426 1573 aa17.4■□□□□ 0.38
MKS1-208ENST00000579358 WDR97A6NE52 1622 aa17.38■□□□□ 0.37
MKS1-208ENST00000579358 EIF4G3O43432 1585 aaKnown RBP17.37■□□□□ 0.37
MKS1-208ENST00000579358 ABCA10Q8WWZ4 1543 aa17.35■□□□□ 0.37
MKS1-208ENST00000579358 AQRO60306 1485 aaKnown RBP eCLIP17.34■□□□□ 0.37
MKS1-208ENST00000579358 TDRD9Q8NDG6 1382 aaKnown RBP17.33■□□□□ 0.36
MKS1-208ENST00000579358 DNAJC5Q9H3Z4 198 aa17.28■□□□□ 0.36
MKS1-208ENST00000579358 GRIN2BQ13224 1484 aa17.26■□□□□ 0.35
MKS1-208ENST00000579358 GAPVD1Q14C86 1478 aa17.25■□□□□ 0.35
MKS1-208ENST00000579358 ABCA5Q8WWZ7 1642 aa17.25■□□□□ 0.35
MKS1-208ENST00000579358 MAGI1Q96QZ7 1491 aaPredicted RBP17.22■□□□□ 0.35
MKS1-208ENST00000579358 SNAPC4Q5SXM2 1469 aa17.21■□□□□ 0.35
MKS1-208ENST00000579358 OSCARQ8IYS5 282 aa17.18■□□□□ 0.34
MKS1-208ENST00000579358 PBRM1Q86U86 1689 aa17.15■□□□□ 0.34
MKS1-208ENST00000579358 SYNJ2O15056 1496 aa17.14■□□□□ 0.33
MKS1-208ENST00000579358 ERICH3Q5RHP9 1530 aa17.14■□□□□ 0.33
MKS1-208ENST00000579358 KIF27Q86VH2 1401 aa17.12■□□□□ 0.33
MKS1-208ENST00000579358 FBLN2P98095 1184 aa17.1■□□□□ 0.33
MKS1-208ENST00000579358 CHMP7Q8WUX9 453 aaPredicted RBP17.1■□□□□ 0.33
MKS1-208ENST00000579358 CHD1O14646 1710 aa17.08■□□□□ 0.32
MKS1-208ENST00000579358 ADAMTS12P58397 1594 aa17.08■□□□□ 0.32
MKS1-208ENST00000579358 FHAD1B1AJZ9 1412 aa17.08■□□□□ 0.32
MKS1-208ENST00000579358 TRIM41Q8WV44 630 aa17.08■□□□□ 0.32
MKS1-208ENST00000579358 IGF1RP08069 1367 aa17.03■□□□□ 0.32
MKS1-208ENST00000579358 GRIN2AQ12879 1464 aa17.03■□□□□ 0.32
MKS1-208ENST00000579358 CLASP1Q7Z460 1538 aa16.99■□□□□ 0.31
MKS1-208ENST00000579358 CUL7Q14999 1698 aa16.97■□□□□ 0.31
MKS1-208ENST00000579358 NUP160Q12769 1436 aa16.97■□□□□ 0.31
MKS1-208ENST00000579358 CARMIL1Q5VZK9 1371 aa16.93■□□□□ 0.3
MKS1-208ENST00000579358 RUSC2Q8N2Y8 1516 aa16.92■□□□□ 0.3
MKS1-208ENST00000579358 CHIC1Q5VXU3 224 aa16.92■□□□□ 0.3
MKS1-208ENST00000579358 CEP170Q5SW79 1584 aa16.92■□□□□ 0.3
MKS1-208ENST00000579358 ARHGEF11O15085 1522 aa16.91■□□□□ 0.3
MKS1-208ENST00000579358 EEA1Q15075 1411 aa16.87■□□□□ 0.29
MKS1-208ENST00000579358 RIMBP3CA6NJZ7 1639 aa16.86■□□□□ 0.29
MKS1-208ENST00000579358 RIMBP3BA6NNM3 1639 aa16.86■□□□□ 0.29
MKS1-208ENST00000579358 RIMBP3Q9UFD9 1639 aa16.86■□□□□ 0.29
MKS1-208ENST00000579358 RAPGEF2Q9Y4G8 1499 aa16.85■□□□□ 0.29
MKS1-208ENST00000579358 KIAA0586Q9BVV6 1533 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms